Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq284040 102 6e-17 seq228143 98.7 8e-16 >seq284040 Length=2693 Score = 102 bits (112), Expect = 6e-17 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| |||| |||||| |||||||| | |||| ||||||||| ||||||||||| ||| Sbjct 985 CCTCCCCTCAACCGCAGAACCAGATGCAACGTGGACTCCTTCTGGATGTTGTAATCGGCC 926 Query 33961 AATTGTCGCTC-GTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || ||| || ||| || | ||||||||||| || |||| |||||||| ||| || Sbjct 925 AAA-GTCCTTCCGTCTTCGAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCCGGTGG 867 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCA 34079 | | || |||||| ||| || ||| | | | | | || | || || || Sbjct 866 GATTCCTTCCTTGTCCTGAATCTTCGCCTTCACGTTATCGATCGTGTC-GGAGCTTTCCA 808 Query 34080 -TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || | ||| || ||||||||||| | || ||||| ||||| ||||| Sbjct 807 CCTCCAACGTGATCGTTTTTCCGGTCAACGTCTTCACGAAGATCTGCAT 759 >seq228143 Length=6931 Score = 98.7 bits (108), Expect = 8e-16 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| || ||||| ||||| |||||||| || ||||||||| ||||||||||| ||| Sbjct 3323 CCTCCCCTTAGCCGAAGCACAAGATGAAGGGTCGACTCCTTCTGGATGTTGTAATCAGCC 3264 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014 || ||| | || ||||||||||| || ||||| |||| | |||||| ||| Sbjct 3263 AACGTACGCCCATCTTCCAATTGCTTCCCAGCAAAGATCAACCTCTGCTGGTCC 3210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394817467012612