Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27]
463,906 sequences; 661,937,708 total letters
Query= NC_009503.1
Length=124121
Score E
Sequences producing significant alignments: (Bits) Value
seq284040 102 6e-17
seq228143 98.7 8e-16
>seq284040
Length=2693
Score = 102 bits (112), Expect = 6e-17
Identities = 163/229 (71%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960
||||| |||| |||||| |||||||| | |||| ||||||||| ||||||||||| |||
Sbjct 985 CCTCCCCTCAACCGCAGAACCAGATGCAACGTGGACTCCTTCTGGATGTTGTAATCGGCC 926
Query 33961 AATTGTCGCTC-GTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019
|| ||| || ||| || | ||||||||||| || |||| |||||||| ||| ||
Sbjct 925 AAA-GTCCTTCCGTCTTCGAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCCGGTGG 867
Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCA 34079
| | || |||||| ||| || ||| | | | | | || | || || ||
Sbjct 866 GATTCCTTCCTTGTCCTGAATCTTCGCCTTCACGTTATCGATCGTGTC-GGAGCTTTCCA 808
Query 34080 -TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127
|| | ||| || ||||||||||| | || ||||| ||||| |||||
Sbjct 807 CCTCCAACGTGATCGTTTTTCCGGTCAACGTCTTCACGAAGATCTGCAT 759
>seq228143
Length=6931
Score = 98.7 bits (108), Expect = 8e-16
Identities = 90/114 (79%), Gaps = 0/114 (0%)
Strand=Plus/Minus
Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960
||||| || ||||| ||||| |||||||| || ||||||||| ||||||||||| |||
Sbjct 3323 CCTCCCCTTAGCCGAAGCACAAGATGAAGGGTCGACTCCTTCTGGATGTTGTAATCAGCC 3264
Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014
|| ||| | || ||||||||||| || ||||| |||| | |||||| |||
Sbjct 3263 AACGTACGCCCATCTTCCAATTGCTTCCCAGCAAAGATCAACCTCTGCTGGTCC 3210
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 394817467012612
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |