Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq294625 105 8e-18 seq293582 95.1 1e-14 seq275305 95.1 1e-14 >seq294625 Length=4757 Score = 105 bits (116), Expect = 8e-18 Identities = 180/258 (70%), Gaps = 11/258 (4%) Strand=Plus/Plus Query 126065 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTC 126124 || ||||| || || || | || || |||||| || ||| ||||| | ||| || ||| Sbjct 4102 CCTTCGTCTCGTGAAATCAACTCGTTGGAGAAGGTCAATCCAGGCATCAAACCGCGTTTC 4161 Query 126125 TTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAAC 126184 ||||||||||| || || || || ||||||||||| || || || || || ||||| Sbjct 4162 TTCAACCAGAAGATAGCGCAGAAGCTTCCCGAGAAGAATATCCCTTCGACGCAAGCGAAG 4221 Query 126185 GCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTG---TCAAACCACTTCATCGCCCAC 126241 |||| || ||| || ||||| ||||| | | || | |||| |||||||||| Sbjct 4222 GCAATGATACGTTCCGCAAA------CGACTCCGAGCCATCGATCCACCTCATCGCCCAA 4275 Query 126242 TGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTTTTCT 126301 | ||||| |||| || || || | ||||| | || ||| || | |||| || Sbjct 4276 TTGGCCTTCTTCTGGACGCAAGGAATGGTCTCCACAGCGCGAAACAGCCTCATCTTGTC- 4334 Query 126302 GATGGA-TCTTTGATGTA 126318 | |||| || |||||||| Sbjct 4335 GTTGGAGTCCTTGATGTA 4352 >seq293582 Length=2029 Score = 95.1 bits (104), Expect = 1e-14 Identities = 367/566 (65%), Gaps = 13/566 (2%) Strand=Plus/Plus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 ||| |||||||||| ||||||||||||||| |||||||| | ||| || |||||| Sbjct 1011 GTACTCCCCAACCCTCTTCTCGAAGAAGTTCGTCTTCCCCTGCAACGAAATCAGCTCCAT 1070 Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTG-GCACCCCAATCTGTTTGAGGAGAC 125876 ||||||| || |||| || | || | | ||||||| | | | | Sbjct 1071 CCAATCAAACGGATTCTGCACCTTGTACATCTTCCCGTACCCCAA-CGCCACCAACAACC 1129 Query 125877 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 125936 |||||| ||| |||| || ||| |||| || |||||| || | || || Sbjct 1130 GATCCGCCACGAACTCGATATACGTGCTCATCAGATCGCCGTTCATCCCCACCAGACCAC 1189 Query 125937 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCGT 125996 | || |||||||| | | ||| || |||| || ||||| || ||| ||| || | Sbjct 1190 ACGGCAGCGCGTCGCACACAAACTCCCTCTCGATCTCCACCGCGTCCGCCACAATCTTCT 1249 Query 125997 GAATGGTGTCCACCC-CAGGTCTAT--TGCGCAAAGTCTTGAAGAGTTCCACGGCAAACT 126053 || ||| | | ||| | || | |||| | || | |||| ||| | Sbjct 1250 TAACCCGCTCCTCGCTCAGCTTCATGTTCAACAAACCGTAGATCAAG--CACGCGAAA-T 1306 Query 126054 CTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGA 126113 | ||| || || ||||| | ||||| | ||| || ||||| || || ||||| | Sbjct 1307 CGCAGTGCAGGCCTTCGTCCCTCGAGATCAATTCGTTGGAGAACGTTAGGCCCGGCATCA 1366 Query 126114 GACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCA 126173 | || |||||||| | |||||| || || || || || ||||||||||| ||||| | Sbjct 1367 GGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGCTTCCGGAGAAGAAGATGCCCTCGA 1426 Query 126174 CACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCA 126233 |||| ||||| || | || ||||| || ||||| ||| ||| | ||| | Sbjct 1427 CACAGGCGAAGGCGACGATCCGCTCCGCGAAGGACTCGGAC---CCGTCGATCCAGCGGA 1483 Query 126234 TCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCT 126293 |||||||| ||||| || ||| || |||| ||||| | || | || || | Sbjct 1484 GGGCCCACTGGGCCTTCCGCTGGATGCAGGGGATGGTCTCCACGGCGTGGAACAGCCGGT 1543 Query 126294 TCTTTTCTGATGGA-TCTTTGATGTA 126318 |||| || | |||| || |||||||| Sbjct 1544 TCTTCTC-GTTGGAGTCCTTGATGTA 1568 >seq275305 Length=4240 Score = 95.1 bits (104), Expect = 1e-14 Identities = 177/257 (69%), Gaps = 10/257 (4%) Strand=Plus/Minus Query 10819 GTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAA 10878 |||||| ||||| ||||| || || || | |||| || || || | ||||| Sbjct 3665 GTCAAGAATATCTGCACGGTTGGTAGCTGCAACTACAATAATACCTGTGTTCCCTTCAAA 3606 Query 10879 GCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTC---GCGGG 10935 |||||||||||| ||||| || || || | |||||||| | |||||||||| | Sbjct 3605 GCCATCCATCTCGGTCAAAAGCTGGTTCAGCGTTTGTTCTCTTTCATCATTCCCACCTCC 3546 Query 10936 CATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACA 10995 |||||| | | || |||| || || || ||||||||||| | || || ||||| Sbjct 3545 AATACCAGTCCCCCT---TTGCCGCCCAACAGCATCAATTTCATCAACAAACACAATACA 3489 Query 10996 CGGTTGATTTTCACGGGCAACTTC--AAAGATATCTCGGACTCTCTTGGCACCGACACCC 11053 || ||| || ||| |||| |||| ||||| ||||| ||||| ||||| Sbjct 3488 AGGAGCATTCTCCTTGGC--CTTCTTGAAGAGATCTCTAACTCTTGAAGCACCAACACCA 3431 Query 11054 ACAAACATTTCCACAAA 11070 |||||||| || ||||| Sbjct 3430 ACAAACATCTCAACAAA 3414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593889651010480