Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27]
463,906 sequences; 661,937,708 total letters
Query= NC_010191.2
Length=186713
Score E
Sequences producing significant alignments: (Bits) Value
seq294625 105 8e-18
seq293582 95.1 1e-14
seq275305 95.1 1e-14
>seq294625
Length=4757
Score = 105 bits (116), Expect = 8e-18
Identities = 180/258 (70%), Gaps = 11/258 (4%)
Strand=Plus/Plus
Query 126065 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTC 126124
|| ||||| || || || | || || |||||| || ||| ||||| | ||| || |||
Sbjct 4102 CCTTCGTCTCGTGAAATCAACTCGTTGGAGAAGGTCAATCCAGGCATCAAACCGCGTTTC 4161
Query 126125 TTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAAC 126184
||||||||||| || || || || ||||||||||| || || || || || |||||
Sbjct 4162 TTCAACCAGAAGATAGCGCAGAAGCTTCCCGAGAAGAATATCCCTTCGACGCAAGCGAAG 4221
Query 126185 GCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTG---TCAAACCACTTCATCGCCCAC 126241
|||| || ||| || ||||| ||||| | | || | |||| ||||||||||
Sbjct 4222 GCAATGATACGTTCCGCAAA------CGACTCCGAGCCATCGATCCACCTCATCGCCCAA 4275
Query 126242 TGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTTTTCT 126301
| ||||| |||| || || || | ||||| | || ||| || | |||| ||
Sbjct 4276 TTGGCCTTCTTCTGGACGCAAGGAATGGTCTCCACAGCGCGAAACAGCCTCATCTTGTC- 4334
Query 126302 GATGGA-TCTTTGATGTA 126318
| |||| || ||||||||
Sbjct 4335 GTTGGAGTCCTTGATGTA 4352
>seq293582
Length=2029
Score = 95.1 bits (104), Expect = 1e-14
Identities = 367/566 (65%), Gaps = 13/566 (2%)
Strand=Plus/Plus
Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817
||| |||||||||| ||||||||||||||| |||||||| | ||| || ||||||
Sbjct 1011 GTACTCCCCAACCCTCTTCTCGAAGAAGTTCGTCTTCCCCTGCAACGAAATCAGCTCCAT 1070
Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTG-GCACCCCAATCTGTTTGAGGAGAC 125876
||||||| || |||| || | || | | ||||||| | | | |
Sbjct 1071 CCAATCAAACGGATTCTGCACCTTGTACATCTTCCCGTACCCCAA-CGCCACCAACAACC 1129
Query 125877 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 125936
|||||| ||| |||| || ||| |||| || |||||| || | || ||
Sbjct 1130 GATCCGCCACGAACTCGATATACGTGCTCATCAGATCGCCGTTCATCCCCACCAGACCAC 1189
Query 125937 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCGT 125996
| || |||||||| | | ||| || |||| || ||||| || ||| ||| || |
Sbjct 1190 ACGGCAGCGCGTCGCACACAAACTCCCTCTCGATCTCCACCGCGTCCGCCACAATCTTCT 1249
Query 125997 GAATGGTGTCCACCC-CAGGTCTAT--TGCGCAAAGTCTTGAAGAGTTCCACGGCAAACT 126053
|| ||| | | ||| | || | |||| | || | |||| ||| |
Sbjct 1250 TAACCCGCTCCTCGCTCAGCTTCATGTTCAACAAACCGTAGATCAAG--CACGCGAAA-T 1306
Query 126054 CTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGA 126113
| ||| || || ||||| | ||||| | ||| || ||||| || || ||||| |
Sbjct 1307 CGCAGTGCAGGCCTTCGTCCCTCGAGATCAATTCGTTGGAGAACGTTAGGCCCGGCATCA 1366
Query 126114 GACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCA 126173
| || |||||||| | |||||| || || || || || ||||||||||| ||||| |
Sbjct 1367 GGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGCTTCCGGAGAAGAAGATGCCCTCGA 1426
Query 126174 CACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCA 126233
|||| ||||| || | || ||||| || ||||| ||| ||| | ||| |
Sbjct 1427 CACAGGCGAAGGCGACGATCCGCTCCGCGAAGGACTCGGAC---CCGTCGATCCAGCGGA 1483
Query 126234 TCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCT 126293
|||||||| ||||| || ||| || |||| ||||| | || | || || |
Sbjct 1484 GGGCCCACTGGGCCTTCCGCTGGATGCAGGGGATGGTCTCCACGGCGTGGAACAGCCGGT 1543
Query 126294 TCTTTTCTGATGGA-TCTTTGATGTA 126318
|||| || | |||| || ||||||||
Sbjct 1544 TCTTCTC-GTTGGAGTCCTTGATGTA 1568
>seq275305
Length=4240
Score = 95.1 bits (104), Expect = 1e-14
Identities = 177/257 (69%), Gaps = 10/257 (4%)
Strand=Plus/Minus
Query 10819 GTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAA 10878
|||||| ||||| ||||| || || || | |||| || || || | |||||
Sbjct 3665 GTCAAGAATATCTGCACGGTTGGTAGCTGCAACTACAATAATACCTGTGTTCCCTTCAAA 3606
Query 10879 GCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTC---GCGGG 10935
|||||||||||| ||||| || || || | |||||||| | |||||||||| |
Sbjct 3605 GCCATCCATCTCGGTCAAAAGCTGGTTCAGCGTTTGTTCTCTTTCATCATTCCCACCTCC 3546
Query 10936 CATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACA 10995
|||||| | | || |||| || || || ||||||||||| | || || |||||
Sbjct 3545 AATACCAGTCCCCCT---TTGCCGCCCAACAGCATCAATTTCATCAACAAACACAATACA 3489
Query 10996 CGGTTGATTTTCACGGGCAACTTC--AAAGATATCTCGGACTCTCTTGGCACCGACACCC 11053
|| ||| || ||| |||| |||| ||||| ||||| ||||| |||||
Sbjct 3488 AGGAGCATTCTCCTTGGC--CTTCTTGAAGAGATCTCTAACTCTTGAAGCACCAACACCA 3431
Query 11054 ACAAACATTTCCACAAA 11070
|||||||| || |||||
Sbjct 3430 ACAAACATCTCAACAAA 3414
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593889651010480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |