Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq284040 131 2e-25 seq25275 122 9e-23 seq156932 116 4e-21 seq228143 96.9 3e-15 seq259261 84.2 2e-11 >seq284040 Length=2693 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 |||||||| | | ||||| ||||||| |||||||| || || |||||||| || || Sbjct 529 CCGCCGCGAAGCCGTAGCACCAGATGAAGAGTCGATTCCTTCTGGATGTTGTAGTCCGCT 470 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||| | |||| || |||||||| ||||| | ||||| |||||||| ||||||||| Sbjct 469 AGGGTTCTGCCGTCCTCCAGCTGCTTTCCGGCGAAGATGAGGCGCTGCTGATCGGGAGGA 410 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 |||||||| || || || || || ||| ||| || | ||||| | || || Sbjct 409 ATTCCTTCCTTGTCCTGGATCTTCGCCTTGACATTGTCGATCGTATCGGAGCTCTCGACC 350 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | ||| | || |||||||| | ||||| ||||| || ||||| Sbjct 349 TCCAGAGTGATTGTTTTGCCGGTTAGGGTTTTGACGAAGATCTGCAT 303 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 |||||||| | | || || || || | ||||| || || || |||||||| || || Sbjct 757 CCGCCGCGGAGGCGTAGAACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGCT 698 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||| | |||| || |||||||| ||||| | ||||| |||||||| || |||||| Sbjct 697 AGGGTTCTGCCGTCCTCCAGCTGCTTCCCGGCGAAGATGAGACGCTGCTGATCCGGAGGA 638 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 |||||||| || || || || || ||| || || | ||||| | || || Sbjct 637 ATTCCTTCCTTGTCCTGGATCTTCGCCTTGACGTTATCGATCGTATCGGAGCTCTCGACC 578 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | ||| | |||||||||||| | ||||| ||||| || ||||| Sbjct 577 TCCAGAGTGATGGTCTTGCCGGTTAGGGTTTTGACGAAGATCTGCAT 531 Score = 109 bits (120), Expect = 5e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 |||||| || || | || || || || || ||||||||||| || | || || | || Sbjct 1199 AAGCACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCCGCCAGAGTCCGGCCATC 1140 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| |||||||| |||||| | || | || ||||||||| || ||||| || ||||| || Sbjct 1139 TTCCAGCTGCTTTCCGGCAAATATCAACCTCTGCTGGTCCGGTGGAATCCCCTCTTTATC 1080 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || || || ||| ||| || | ||||| | ||||| || | ||| | || Sbjct 1079 CTGAATCTTGGCCTTGACATTATCGATCGTATCGGAGCTCTCCACCTCCAGAGTAATCGT 1020 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| |||||||| || || ||||| || ||||| Sbjct 1019 CTTCCCGGTCAACGTCTTCACGAATATCTGCAT 987 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | ||| || || || || ||||||||||| || | || | ||||| Sbjct 970 AGAACCAGATGCAACGTGGACTCCTTCTGGATGTTGTAATCGGCCAAAGTCCTTCCGTCT 911 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || |||||||||||||| | || | ||||||||||| || || |||||||| || || Sbjct 910 TCGAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCC 851 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| || || | || || | ||||| || | || | || Sbjct 850 TGAATCTTCGCCTTCACGTTATCGATCGTGTCGGAGCTTTCCACCTCCAACGTGATCGTT 791 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || |||||||| || || ||||| || ||||| Sbjct 790 TTTCCGGTCAACGTCTTCACGAAGATCTGCAT 759 >seq25275 Length=8276 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || | ||||| |||||| | |||| || ||||| || ||||||||||| ||||| Sbjct 5473 CCACCTCTCAATCGAAGCACCAAGTGAAGGGTTGATTCCTTCTGAATGTTGTAGTCTGCA 5414 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||| || | || |||||||||||||||||| | || | | || ||||| || || Sbjct 5413 AGGGTACGGCCATCCTCAAGCTGCTTGCCGGCAAAGATCAATCTTTGTTGGTCTGGTGGG 5354 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 ||||| ||||| ||||| ||||| ||| || || | || || | || ||| Sbjct 5353 ATTCCCTCTTTATCTTGGATTTTCGCCTTCACGTTGTCGATGGTGTCGGAGCTCTCAACT 5294 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | |||||| ||||||||||| || || || || ||||| Sbjct 5293 TCCAGTGTGATGGTCTTTCCGGTCAAAGTCTTCACAAAGATCTGCAT 5247 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || | ||||| ||| || | ||||| |||||||| || ||||||||||| || || Sbjct 5701 CCACCTCTCAATCGAAGAACCAAATGAAGGGTCGATTCCTTCTGAATGTTGTAGTCAGCA 5642 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || || | || || |||||||| || ||| | || |||| ||||||||| || || Sbjct 5641 AGCGTACGACCATCCTCGAGCTGCTTACCCGCAAAGATCAGCCTCTGCTGGTCTGGTGGG 5582 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || || || ||||| || || ||| || || | || || | || || Sbjct 5581 ATACCCTCCTTATCTTGAATCTTAGCCTTCACGTTGTCGATGGTGTCGGAGCTCTCAACC 5522 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | ||| | |||||| |||||||| || || || || || ||||| Sbjct 5521 TCGAGAGTGATGGTCTTTCCGGTCAATGTCTTCACAAAGATCTGCAT 5475 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 |||||| | || | ||| || | |||| || || || || || ||||||||||| || Sbjct 5246 ACCGCCTCTTAAACGAAGAACCAAGTGAAGGGTGGACTCCTTCTGTATGTTGTAATCGGC 5187 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| |||| || ||||||||||||||| | || | || ||||||||| || || Sbjct 5186 CAAAGTGCGACCGTCCTCGAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGGGG 5127 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| || || || ||||| ||||| ||| || || | || || | || || Sbjct 5126 AATACCCTCCTTGTCTTGGATTTTCGCCTTCACGTTATCGATAGTGTCCGAGCTCTCGAC 5067 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| | || | ||| || || || | ||||| || || |||||||| Sbjct 5066 TTCCAACGTGATGGTTTTCCCTGTTAGGGTTTTGACAAAGATTTGCAT 5019 >seq156932 Length=6713 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || | ||| || ||||| ||||| | |||||||| || || ||||||||||| || Sbjct 3757 CCTCCCCTCAACCTCAGCACAAGATGCAGGGTCGATTCCTTCTGGATGTTGTAATCCGCA 3816 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || ||| | ||||| ||||| || |||||| | ||||| | || ||||| || || Sbjct 3817 AGAGTCCGCCCATCTTCCAGCTGTTTTCCGGCAAAGATGAGTCTTTGTTGGTCTGGTGGG 3876 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCAC 64395 |||||||| || ||||| | | || ||||| || || | ||||| | || || Sbjct 3877 ATTCCTTCCTTGTCTTG-AATCTTGGCTTTCACGTTGTCGATGGTATCCGAGCTCTCGAC 3935 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| | ||| | ||||| || || | ||||| |||||||| ||||| Sbjct 3936 TTCCAAAGTGATCGTCTTCCCAGTGAGGGTTTTGACGAAAATCTGCAT 3983 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || |||||||| || || | || || |||| || || || || ||| Sbjct 4015 GTTGACTCCTTCTGGATGTTGTAGTCCGCAAGAGTACGGCCGTCCTCGAGTTGTTTACCG 4074 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | || | ||||||||||| || || || ||||| || ||||| || || ||| Sbjct 4075 GCGAAGATCAATCGCTGCTGGTCTGGGGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTG 4134 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || || | || ||| | || ||||| | ||| | ||| ||||||||||| || Sbjct 4135 ACGTTGTCGATGGTGTCAGAGCTTTCTACTTCAAGAGTGATGGTTTTGCCGGTCAAGGTC 4194 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| |||||||| Sbjct 4195 TTGACGAAGATTTGCAT 4211 >seq228143 Length=6931 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 |||||| ||||||| ||||| || || || ||||||||||| || | || ||| | || Sbjct 3309 AAGCACAAGATGAAGGGTCGACTCCTTCTGGATGTTGTAATCAGCCAACGTACGCCCATC 3250 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| | ||||| || ||| | || | || ||||||||| || || || ||||| || || Sbjct 3249 TTCCAATTGCTTCCCAGCAAAGATCAACCTCTGCTGGTCCGGTGGGATGCCTTCCTTATC 3190 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || || || ||| ||| || | || || || || || | ||| | ||| Sbjct 3189 CTGGATCTTAGCCTTCACATTGTCAATGGTGTCCGAACTCTCGACCTCCAAAGTGATGGT 3130 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| || ||||| || || || ||||| ||||| Sbjct 3129 CTTTCCAGTCAACGTCTTAACAAAAATCTGCAT 3097 >seq259261 Length=7884 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||| | | ||||| || || | || || || || || |||||||| || || Sbjct 2603 ACCACCGCGGAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGC 2544 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||| | |||| || ||||| || ||||| | ||||| ||||||||||| || || Sbjct 2543 TAGGGTCCTGCCGTCCTCGAGCTGTTTCCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGG 2484 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || ||||| || || || || || ||| || || | || || || || || Sbjct 2483 GATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATCGTGTCGGAGGATTCGAC 2424 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || | || | ||||| || || | ||||| ||||| || |||||||| Sbjct 2423 CTCCAACGTGATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATTTT 2373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496747447242640