Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq293582 143 3e-29 seq156932 100 3e-16 seq277754 98.7 1e-15 seq259261 98.7 1e-15 seq243249 98.7 1e-15 seq25275 96.9 3e-15 seq228143 95.1 1e-14 seq62239 93.3 4e-14 seq268484 87.8 2e-12 >seq293582 Length=2029 Score = 143 bits (158), Expect = 3e-29 Identities = 302/447 (68%), Gaps = 5/447 (1%) Strand=Plus/Minus Query 52392 GCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCC 52451 || ||||| || || ||||||||| ||||||||| | || || ||||| ||||| | Sbjct 1454 GCGGAGCGGATCGTCGCCTTCGCCTGTGTCGAGGGCATCTTCTTCTCCGGAAGCTTCTGC 1395 Query 52452 GCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTG 52511 |||||||| | | || | | ||| | ||||| ||||| |||||| |||||| ||| Sbjct 1394 GCCATCTTCTGGCTCAAGAAGCGCGGCCTGATGCCGGGCCTAACGTTCTCCAACGAATTG 1335 Query 52512 ATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAGACGCGCGTG 52571 || ||| | |||||||| |||||| || || |||||| | |||| | || Sbjct 1334 ATCTCGAGGGACGAAGGCCTGCACTGCGATTTCGCGTGCTTGATCTACGGTTTGT---TG 1278 Query 52572 ACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAGGAGGCGGTGGCTATCGAA 52631 | | || || ||| | | || || | ||| ||||||| ||||| Sbjct 1277 AACATGAAGCTGAGCGAGGAGCGGGTTAAGAAGATTGTGGCGGACGCGGTGGAGATCGAG 1218 Query 52632 AAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCC-AT 52690 | ||||||| | | |||||||||| | ||| |||| ||||||| || || || Sbjct 1217 AGGGAGTTTGTGTGCGACGCGCTGCCGTGTGGTCTGGTGGGGATGAACG-GCGATCTGAT 1159 Query 52691 GTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCAAAGTA 52750 | || ||| |||||||| ||||||||||| |||||||| | | ||| | ||| Sbjct 1158 GAGCACGTATATCGAGTTCGTGGCGGATCGGTTGTTGGTGGCGTTGGGGTACGGGAAGAT 1099 Query 52751 CTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAA 52810 | ||| | | ||||||||||| | ||| | |||||| | |||| ||||| || Sbjct 1098 GTACAAGGTGCAGAATCCGTTTGATTGGATGGAGCTGATTTCGTTGCAGGGGAAGACGAA 1039 Query 52811 CTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 ||| ||||||||| | || || ||||| Sbjct 1038 CTTCTTCGAGAAGAGGGTTGGGGAGTA 1012 >seq156932 Length=6713 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || || | ||| | || || || | | | ||||||||||| |||||||||||| Sbjct 4212 GCCACCGCGGAGACGGAGGACCAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGGC 4271 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | ||| || ||||||||| |||||||||| | |||| || | ||| || || ||||| Sbjct 4272 TAGAGTTCGGCCGTCCTCGAGCTGTTTACCGGCAAAGATCAGCCTCTGCTGATCTGGAGG 4331 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| ||| || || | | || | || |||| ||| || Sbjct 4332 AATCCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCAATTGTATCGGAACTCTCGAC 4391 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| || | || || ||||| || || || || || |||||||| Sbjct 4392 CTCGAGAGTGATGGTCTTGCCAGTGAGGGTCTTAACGAATATCTGCAT 4439 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | || || || | | |||||||||| || ||||||||||| Sbjct 3985 CCACCACGGAGACGGAGGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCCGCA 4044 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| |||||||||||||||||||| |||| | ||||| ||||| || || Sbjct 4045 AGAGTACGGCCGTCCTCGAGTTGTTTACCGGCGAAGATCAATCGCTGCTGGTCTGGGGGG 4104 Query 138508 ATACCTTCTTTGTC 138521 || ||||| ||||| Sbjct 4105 ATGCCTTCCTTGTC 4118 >seq277754 Length=2847 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/192 (71%), Gaps = 9/192 (5%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||| |||||||||||| | || | ||||||||||||||| |||| Sbjct 2771 GACTCCTTTTGGATGTTGTAGTCGGCTAGGGTTCTACCGTCCTCGAGTTGTTTTCCGGCG 2712 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || || || |||||||| || || ||||| |||||| | ||| ||| || Sbjct 2711 AAGATGAGCCGTTGCTGGTCCGGTGGGATGCCTTCCTTGTCG--GCTTTCACGTTGTA-- 2656 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | |||||||| ||||| ||||| | ||| | || || || || || ||||| Sbjct 2655 -----GATGGTGTCGGAGGACTCAACCTCCAGCGTTATGGTCTTGCCGGTTAGGGTTTTC 2601 Query 138601 ACAAAAATCTGC 138612 || || |||||| Sbjct 2600 ACGAAGATCTGC 2589 >seq259261 Length=7884 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | || | ||||||||| ||||| |||| Sbjct 2569 GACTCCTTCTGGATGTTGTAGTCGGCTAGGGTCCTGCCGTCCTCGAGCTGTTTCCCGGCG 2510 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || ||||| |||||||| || || ||||| ||||| ||| || || | Sbjct 2509 AAGATGAGGCGCTGCTGGTCCGGCGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTCACG 2450 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||||||| || || ||||| | ||| | ||| || || || || ||||| Sbjct 2449 TTGTCGATCGTGTCGGAGGATTCGACCTCCAACGTGATCGTCTTCCCCGTTAGGGTTTTC 2390 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 2389 ACGAAGATCTGCAT 2376 >seq243249 Length=1014 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/192 (71%), Gaps = 9/192 (5%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||| ||| |||||||| | || | ||||||||| ||||| |||| Sbjct 759 GACTCCTTTTGGATGCTGTAGTCGGCTAGGGTTCTGCCGTCCTCGAGCTGTTTTCCGGCG 818 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || || || |||||||| || || ||||| |||||| | ||| ||| || Sbjct 819 AAGATGAGCCGTTGCTGGTCCGGCGGGATGCCTTCCTTGTCG--GCTTTCACGTTGTA-- 874 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | |||||||| ||||| ||||| | ||| | || || || || |||||||| Sbjct 875 -----GATGGTGTCGGAGGACTCAACCTCCAACGTTATGGTCTTGCCGGTTAGAGTTTTC 929 Query 138601 ACAAAAATCTGC 138612 ||||| |||||| Sbjct 930 ACAAAGATCTGC 941 >seq25275 Length=8276 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| ||| || | ||| ||||| | | | || ||||| |||||||||||||| Sbjct 5701 CCACCTCTCAATCGAAGAACCAAATGAAGGGTCGATTCCTTCTGAATGTTGTAGTCAGCA 5642 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| |||||||| || ||||| | | |||| || | ||| ||||| || || Sbjct 5641 AGCGTACGACCATCCTCGAGCTGCTTACCCGCAAAGATCAGCCTCTGCTGGTCTGGTGGG 5582 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 ||||| || || || ||| | || | || | ||| || | |||||||| ||| | Sbjct 5581 ATACCCTCCTTATC-TTGAATCTTAGCCTTCACGTTG-TCGATGGTGTCGGAGCTCTCAA 5524 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||||| || | || || || |||| || || ||||| |||||||| Sbjct 5523 CCTCGAGAGTGATGGTCTTTCCGGTCAATGTCTTCACAAAGATCTGCAT 5475 >seq228143 Length=6931 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | || ||||| | | | || ||||| || ||||||||||| Sbjct 2639 CCACCACGGAGACGTAGGACCAAATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCTGCG 2580 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||||||| |||||||||| | |||| || | ||| ||||| || || Sbjct 2579 AGGGTTCGGCCGTCCTCGAGCTGTTTACCGGCAAAGATGAGTCTCTGCTGGTCTGGGGGG 2520 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| ||||| ||| || || | | || | |||||||| ||| ||| Sbjct 2519 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTATCGATGGTGTCGGAGCTCTCGACC 2460 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||||| ||||| || || || || || |||||||| Sbjct 2459 TCCAAAGTGATGGTTTTCCCAGTGAGGGTCTTGACGAAGATCTGCAT 2413 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | || ||||| | | | || ||||| || |||||||||||| Sbjct 2411 CCACCACGTAGACGGAGGACCAAATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCT 2352 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| || ||||| || || |||| | |||| || | || ||||| || || Sbjct 2351 AAAGTACGGCCATCTTCGAGCTGCTTTCCGGCAAAGATGAGCCTTTGCTGGTCTGGGGGA 2292 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| ||||| ||| || || | | || | ||||||| ||| ||| Sbjct 2291 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATTGTGTCGGAACTCTCAACC 2232 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| || | || || ||||| || || || ||||| |||||||| Sbjct 2231 TCGAGAGTGATTGTCTTTCCAGTGAGGGTCTTAACAAAGATCTGCAT 2185 >seq62239 Length=9780 Score = 93.3 bits (102), Expect = 4e-14 Identities = 139/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | || | ||||||||| || || |||| Sbjct 5364 GACTCCTTCTGGATGTTGTAGTCGGCTAGGGTCCTGCCGTCCTCGAGCTGCTTCCCGGCG 5423 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| || || || |||||||| || || ||||| ||||| ||| || || | | Sbjct 5424 AAGATGAGGCGTTGCTGGTCCGGCGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTGACA 5483 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | |||||||| || || ||||| | || | ||||| || || || ||||| Sbjct 5484 TTG-TCGATGGTGTCGGAGGATTCGACCTCTAGGGTTATGGTTTTCCCGGTTAGGGTTTT 5542 Query 138600 TACAAAAATCTGCAT 138614 || || |||||||| Sbjct 5543 CACGAAGATCTGCAT 5557 >seq268484 Length=6331 Score = 87.8 bits (96), Expect = 2e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 138424 TCCTTTTGAATGTTGTAGTC-GCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 ||||| || ||||||||||| ||| || ||| ||||||||| | ||| |||| | Sbjct 937 TCCTTCTGGATGTTGTAGTCGGCTAGGGGTCCGC-CGTCCTCGAGCTATTTTCCGGCGAA 995 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTG 138542 ||| || |||| ||||||| || || ||||| ||||| ||| || ||| | | Sbjct 996 GATGAGGCGCTACTGGTCCGACGGGATGCCTTCCTTGTCTTGGATCTTGGCTTTCACGTT 1055 Query 138543 TTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602 || | |||||||| ||||| ||||| | ||| | | || || || || ||||| || Sbjct 1056 GTCGATGGTGTCGGAGGACTCGACCTCCAACGTGATGGCCTTGCCGGTTAGGGTTTTCAC 1115 Query 138603 AAAAATCTGCAT 138614 || |||||||| Sbjct 1116 GAAGATCTGCAT 1127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 493384661188320