Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27]
463,906 sequences; 661,937,708 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq293582 143 3e-29
seq156932 100 3e-16
seq277754 98.7 1e-15
seq259261 98.7 1e-15
seq243249 98.7 1e-15
seq25275 96.9 3e-15
seq228143 95.1 1e-14
seq62239 93.3 4e-14
seq268484 87.8 2e-12
>seq293582
Length=2029
Score = 143 bits (158), Expect = 3e-29
Identities = 302/447 (68%), Gaps = 5/447 (1%)
Strand=Plus/Minus
Query 52392 GCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCC 52451
|| ||||| || || ||||||||| ||||||||| | || || ||||| ||||| |
Sbjct 1454 GCGGAGCGGATCGTCGCCTTCGCCTGTGTCGAGGGCATCTTCTTCTCCGGAAGCTTCTGC 1395
Query 52452 GCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTG 52511
|||||||| | | || | | ||| | ||||| ||||| |||||| |||||| |||
Sbjct 1394 GCCATCTTCTGGCTCAAGAAGCGCGGCCTGATGCCGGGCCTAACGTTCTCCAACGAATTG 1335
Query 52512 ATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAGACGCGCGTG 52571
|| ||| | |||||||| |||||| || || |||||| | |||| | ||
Sbjct 1334 ATCTCGAGGGACGAAGGCCTGCACTGCGATTTCGCGTGCTTGATCTACGGTTTGT---TG 1278
Query 52572 ACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAGGAGGCGGTGGCTATCGAA 52631
| | || || ||| | | || || | ||| ||||||| |||||
Sbjct 1277 AACATGAAGCTGAGCGAGGAGCGGGTTAAGAAGATTGTGGCGGACGCGGTGGAGATCGAG 1218
Query 52632 AAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCC-AT 52690
| ||||||| | | |||||||||| | ||| |||| ||||||| || || ||
Sbjct 1217 AGGGAGTTTGTGTGCGACGCGCTGCCGTGTGGTCTGGTGGGGATGAACG-GCGATCTGAT 1159
Query 52691 GTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCAAAGTA 52750
| || ||| |||||||| ||||||||||| |||||||| | | ||| | |||
Sbjct 1158 GAGCACGTATATCGAGTTCGTGGCGGATCGGTTGTTGGTGGCGTTGGGGTACGGGAAGAT 1099
Query 52751 CTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAA 52810
| ||| | | ||||||||||| | ||| | |||||| | |||| ||||| ||
Sbjct 1098 GTACAAGGTGCAGAATCCGTTTGATTGGATGGAGCTGATTTCGTTGCAGGGGAAGACGAA 1039
Query 52811 CTTTTTCGAGAAGCGAGTCGGCGAGTA 52837
||| ||||||||| | || || |||||
Sbjct 1038 CTTCTTCGAGAAGAGGGTTGGGGAGTA 1012
>seq156932
Length=6713
Score = 100 bits (110), Expect = 3e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446
||| || || | ||| | || || || | | | ||||||||||| ||||||||||||
Sbjct 4212 GCCACCGCGGAGACGGAGGACCAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGGC 4271
Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506
| ||| || ||||||||| |||||||||| | |||| || | ||| || || |||||
Sbjct 4272 TAGAGTTCGGCCGTCCTCGAGCTGTTTACCGGCAAAGATCAGCCTCTGCTGATCTGGAGG 4331
Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566
|| ||||| ||||| ||| || || | | || | || |||| ||| ||
Sbjct 4332 AATCCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCAATTGTATCGGAACTCTCGAC 4391
Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
||||| || | || || ||||| || || || || || ||||||||
Sbjct 4392 CTCGAGAGTGATGGTCTTGCCAGTGAGGGTCTTAACGAATATCTGCAT 4439
Score = 89.7 bits (98), Expect = 5e-13
Identities = 100/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || || | ||| | || || || | | |||||||||| || |||||||||||
Sbjct 3985 CCACCACGGAGACGGAGGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCCGCA 4044
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| |||||| |||||||||||||||||||| |||| | ||||| ||||| || ||
Sbjct 4045 AGAGTACGGCCGTCCTCGAGTTGTTTACCGGCGAAGATCAATCGCTGCTGGTCTGGGGGG 4104
Query 138508 ATACCTTCTTTGTC 138521
|| ||||| |||||
Sbjct 4105 ATGCCTTCCTTGTC 4118
>seq277754
Length=2847
Score = 98.7 bits (108), Expect = 1e-15
Identities = 137/192 (71%), Gaps = 9/192 (5%)
Strand=Plus/Minus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
||||||||||| |||||||||||| | || | ||||||||||||||| ||||
Sbjct 2771 GACTCCTTTTGGATGTTGTAGTCGGCTAGGGTTCTACCGTCCTCGAGTTGTTTTCCGGCG 2712
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540
|||| || || || |||||||| || || ||||| |||||| | ||| ||| ||
Sbjct 2711 AAGATGAGCCGTTGCTGGTCCGGTGGGATGCCTTCCTTGTCG--GCTTTCACGTTGTA-- 2656
Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600
| |||||||| ||||| ||||| | ||| | || || || || || |||||
Sbjct 2655 -----GATGGTGTCGGAGGACTCAACCTCCAGCGTTATGGTCTTGCCGGTTAGGGTTTTC 2601
Query 138601 ACAAAAATCTGC 138612
|| || ||||||
Sbjct 2600 ACGAAGATCTGC 2589
>seq259261
Length=7884
Score = 98.7 bits (108), Expect = 1e-15
Identities = 138/194 (71%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||| || |||||||||||| | || | ||||||||| ||||| ||||
Sbjct 2569 GACTCCTTCTGGATGTTGTAGTCGGCTAGGGTCCTGCCGTCCTCGAGCTGTTTCCCGGCG 2510
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540
|||| || ||||| |||||||| || || ||||| ||||| ||| || || |
Sbjct 2509 AAGATGAGGCGCTGCTGGTCCGGCGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTCACG 2450
Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600
| || | ||||||| || || ||||| | ||| | ||| || || || || |||||
Sbjct 2449 TTGTCGATCGTGTCGGAGGATTCGACCTCCAACGTGATCGTCTTCCCCGTTAGGGTTTTC 2390
Query 138601 ACAAAAATCTGCAT 138614
|| || ||||||||
Sbjct 2389 ACGAAGATCTGCAT 2376
>seq243249
Length=1014
Score = 98.7 bits (108), Expect = 1e-15
Identities = 137/192 (71%), Gaps = 9/192 (5%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
||||||||||| ||| |||||||| | || | ||||||||| ||||| ||||
Sbjct 759 GACTCCTTTTGGATGCTGTAGTCGGCTAGGGTTCTGCCGTCCTCGAGCTGTTTTCCGGCG 818
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540
|||| || || || |||||||| || || ||||| |||||| | ||| ||| ||
Sbjct 819 AAGATGAGCCGTTGCTGGTCCGGCGGGATGCCTTCCTTGTCG--GCTTTCACGTTGTA-- 874
Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600
| |||||||| ||||| ||||| | ||| | || || || || ||||||||
Sbjct 875 -----GATGGTGTCGGAGGACTCAACCTCCAACGTTATGGTCTTGCCGGTTAGAGTTTTC 929
Query 138601 ACAAAAATCTGC 138612
||||| ||||||
Sbjct 930 ACAAAGATCTGC 941
>seq25275
Length=8276
Score = 96.9 bits (106), Expect = 3e-15
Identities = 161/229 (70%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| |||| ||| || | ||| ||||| | | | || ||||| ||||||||||||||
Sbjct 5701 CCACCTCTCAATCGAAGAACCAAATGAAGGGTCGATTCCTTCTGAATGTTGTAGTCAGCA 5642
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| ||||| |||||||| || ||||| | | |||| || | ||| ||||| || ||
Sbjct 5641 AGCGTACGACCATCCTCGAGCTGCTTACCCGCAAAGATCAGCCTCTGCTGGTCTGGTGGG 5582
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565
||||| || || || ||| | || | || | ||| || | |||||||| ||| |
Sbjct 5581 ATACCCTCCTTATC-TTGAATCTTAGCCTTCACGTTG-TCGATGGTGTCGGAGCTCTCAA 5524
Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|||||| || | || || || |||| || || ||||| ||||||||
Sbjct 5523 CCTCGAGAGTGATGGTCTTTCCGGTCAATGTCTTCACAAAGATCTGCAT 5475
>seq228143
Length=6931
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || || | ||| | || ||||| | | | || ||||| || |||||||||||
Sbjct 2639 CCACCACGGAGACGTAGGACCAAATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCTGCG 2580
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| || || ||||||||| |||||||||| | |||| || | ||| ||||| || ||
Sbjct 2579 AGGGTTCGGCCGTCCTCGAGCTGTTTACCGGCAAAGATGAGTCTCTGCTGGTCTGGGGGG 2520
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567
|| ||||| ||||| ||| || || | | || | |||||||| ||| |||
Sbjct 2519 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTATCGATGGTGTCGGAGCTCTCGACC 2460
Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|| | || | ||||| ||||| || || || || || ||||||||
Sbjct 2459 TCCAAAGTGATGGTTTTCCCAGTGAGGGTCTTGACGAAGATCTGCAT 2413
Score = 86.0 bits (94), Expect = 6e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || || | ||| | || ||||| | | | || ||||| || ||||||||||||
Sbjct 2411 CCACCACGTAGACGGAGGACCAAATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCT 2352
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| |||||| || ||||| || || |||| | |||| || | || ||||| || ||
Sbjct 2351 AAAGTACGGCCATCTTCGAGCTGCTTTCCGGCAAAGATGAGCCTTTGCTGGTCTGGGGGA 2292
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567
|| ||||| ||||| ||| || || | | || | ||||||| ||| |||
Sbjct 2291 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATTGTGTCGGAACTCTCAACC 2232
Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|||| || | || || ||||| || || || ||||| ||||||||
Sbjct 2231 TCGAGAGTGATTGTCTTTCCAGTGAGGGTCTTAACAAAGATCTGCAT 2185
>seq62239
Length=9780
Score = 93.3 bits (102), Expect = 4e-14
Identities = 139/195 (71%), Gaps = 2/195 (1%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||| || |||||||||||| | || | ||||||||| || || ||||
Sbjct 5364 GACTCCTTCTGGATGTTGTAGTCGGCTAGGGTCCTGCCGTCCTCGAGCTGCTTCCCGGCG 5423
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539
|||| || || || |||||||| || || ||||| ||||| ||| || || | |
Sbjct 5424 AAGATGAGGCGTTGCTGGTCCGGCGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTGACA 5483
Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599
||| || | |||||||| || || ||||| | || | ||||| || || || |||||
Sbjct 5484 TTG-TCGATGGTGTCGGAGGATTCGACCTCTAGGGTTATGGTTTTCCCGGTTAGGGTTTT 5542
Query 138600 TACAAAAATCTGCAT 138614
|| || ||||||||
Sbjct 5543 CACGAAGATCTGCAT 5557
>seq268484
Length=6331
Score = 87.8 bits (96), Expect = 2e-12
Identities = 136/192 (71%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 138424 TCCTTTTGAATGTTGTAGTC-GCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482
||||| || ||||||||||| ||| || ||| ||||||||| | ||| |||| |
Sbjct 937 TCCTTCTGGATGTTGTAGTCGGCTAGGGGTCCGC-CGTCCTCGAGCTATTTTCCGGCGAA 995
Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTG 138542
||| || |||| ||||||| || || ||||| ||||| ||| || ||| | |
Sbjct 996 GATGAGGCGCTACTGGTCCGACGGGATGCCTTCCTTGTCTTGGATCTTGGCTTTCACGTT 1055
Query 138543 TTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602
|| | |||||||| ||||| ||||| | ||| | | || || || || ||||| ||
Sbjct 1056 GTCGATGGTGTCGGAGGACTCGACCTCCAACGTGATGGCCTTGCCGGTTAGGGTTTTCAC 1115
Query 138603 AAAAATCTGCAT 138614
|| ||||||||
Sbjct 1116 GAAGATCTGCAT 1127
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 493384661188320
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