Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27]
463,906 sequences; 661,937,708 total letters
Query= NC_011423.1
Length=111724
Score E
Sequences producing significant alignments: (Bits) Value
seq25275 96.9 2e-15
seq284040 91.5 1e-13
seq228143 82.4 5e-11
seq156932 82.4 5e-11
>seq25275
Length=8276
Score = 96.9 bits (106), Expect = 2e-15
Identities = 148/211 (70%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026
||| || |||||||| || || || ||||||||||||||| | | | | |||| ||
Sbjct 5228 AACCAAGTGAAGGGTGGACTCCTTCTGTATGTTGTAATCGGCCAAAGTGCGACCGTCCTC 5169
Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086
| || ||||| || | ||||| | ||| ||||| ||||| || ||||||||
Sbjct 5168 GAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTTGTCTTG 5109
Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146
||||| || || | || ||||| || | || || || || || ||||||||
Sbjct 5108 GATTTTCGCCTTCACGTTATCGATAGTGTCCGAGCTCTCGACTTCCAACGTGATGGTTTT 5049
Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177
||||| || ||||| ||||| |||||||||
Sbjct 5048 CCCTGTTAGGGTTTTGACAAAGATTTGCATA 5018
>seq284040
Length=2693
Score = 91.5 bits (100), Expect = 1e-13
Identities = 146/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026
||| | ||| | || || || || || |||||||||||| | | | || |||||||
Sbjct 968 AACCAGATGCAACGTGGACTCCTTCTGGATGTTGTAATCGGCCAAAGTCCTTCCGTCTTC 909
Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086
| || ||||| ||| | ||||||||||| ||||| ||| ||||||||||||||
Sbjct 908 GAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCCTG 849
Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146
||| || || || | || || || ||| |||| || || || || || |||||
Sbjct 848 AATCTTCGCCTTCACGTTATCGATCGTGTCGGAGCTTTCCACCTCCAACGTGATCGTTTT 789
Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
|| |||| || || || || || |||||
Sbjct 788 TCCGGTCAACGTCTTCACGAAGATCTGCAT 759
>seq228143
Length=6931
Score = 82.4 bits (90), Expect = 5e-11
Identities = 141/205 (69%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032
||||||||| || || || || ||||||||||| | | | | | ||||| |||||
Sbjct 3300 ATGAAGGGTCGACTCCTTCTGGATGTTGTAATCAGCCAACGTACGCCCATCTTCCAATTG 3241
Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092
|| ||||| | ||||| | ||| ||||| ||| || |||||||| || || ||
Sbjct 3240 CTTCCCAGCAAAGATCAACCTCTGCTGGTCCGGTGGGATGCCTTCCTTATCCTGGATCTT 3181
Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152
|| ||| | || || || || | | || || || || || ||||| || || ||
Sbjct 3180 AGCCTTCACATTGTCAATGGTGTCCGAACTCTCGACCTCCAAAGTGATGGTCTTTCCAGT 3121
Query 15153 CAGAGTTTTTACAAAAATTTGCATA 15177
|| || || |||||||| ||||||
Sbjct 3120 CAACGTCTTAACAAAAATCTGCATA 3096
>seq156932
Length=6713
Score = 82.4 bits (90), Expect = 5e-11
Identities = 155/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009
|| || | ||| || | || | ||| ||||| || || || || |||||||||||
Sbjct 3757 CCTCCCCTCAACCTCAGCACAAGATGCAGGGTCGATTCCTTCTGGATGTTGTAATCCGCA 3816
Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069
||| | | | | ||||| | ||||| || || | || | | |||||||| |||
Sbjct 3817 AGAGTCCGCCCATCTTCCAGCTGTTTTCCGGCAAAGATGAGTCTTTGTTGGTCTGGTGGG 3876
Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129
|||||||||||||| ||| ||| ||| || | || || ||||| | || ||
Sbjct 3877 ATTCCTTCCTTGTCTTGAATCTTGGCTTTCACGTTGTCGATGGTATCCGAGCTCTCGACT 3936
Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177
|| || || || || || || || || ||||| || ||||| ||||||
Sbjct 3937 TCCAAAGTGATCGTCTTCCCAGTGAGGGTTTTGACGAAAATCTGCATA 3984
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 355371357677210
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |