Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq25275 96.9 2e-15 seq284040 91.5 1e-13 seq228143 82.4 5e-11 seq156932 82.4 5e-11 >seq25275 Length=8276 Score = 96.9 bits (106), Expect = 2e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| || |||||||| || || || ||||||||||||||| | | | | |||| || Sbjct 5228 AACCAAGTGAAGGGTGGACTCCTTCTGTATGTTGTAATCGGCCAAAGTGCGACCGTCCTC 5169 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | || ||||| || | ||||| | ||| ||||| ||||| || |||||||| Sbjct 5168 GAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTTGTCTTG 5109 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 ||||| || || | || ||||| || | || || || || || |||||||| Sbjct 5108 GATTTTCGCCTTCACGTTATCGATAGTGTCCGAGCTCTCGACTTCCAACGTGATGGTTTT 5049 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 ||||| || ||||| ||||| ||||||||| Sbjct 5048 CCCTGTTAGGGTTTTGACAAAGATTTGCATA 5018 >seq284040 Length=2693 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| | ||| | || || || || || |||||||||||| | | | || ||||||| Sbjct 968 AACCAGATGCAACGTGGACTCCTTCTGGATGTTGTAATCGGCCAAAGTCCTTCCGTCTTC 909 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | || ||||| ||| | ||||||||||| ||||| ||| |||||||||||||| Sbjct 908 GAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCCTG 849 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 ||| || || || | || || || ||| |||| || || || || || ||||| Sbjct 848 AATCTTCGCCTTCACGTTATCGATCGTGTCGGAGCTTTCCACCTCCAACGTGATCGTTTT 789 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || |||| || || || || || ||||| Sbjct 788 TCCGGTCAACGTCTTCACGAAGATCTGCAT 759 >seq228143 Length=6931 Score = 82.4 bits (90), Expect = 5e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||||||||| || || || || ||||||||||| | | | | | ||||| ||||| Sbjct 3300 ATGAAGGGTCGACTCCTTCTGGATGTTGTAATCAGCCAACGTACGCCCATCTTCCAATTG 3241 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 || ||||| | ||||| | ||| ||||| ||| || |||||||| || || || Sbjct 3240 CTTCCCAGCAAAGATCAACCTCTGCTGGTCCGGTGGGATGCCTTCCTTATCCTGGATCTT 3181 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 || ||| | || || || || | | || || || || || ||||| || || || Sbjct 3180 AGCCTTCACATTGTCAATGGTGTCCGAACTCTCGACCTCCAAAGTGATGGTCTTTCCAGT 3121 Query 15153 CAGAGTTTTTACAAAAATTTGCATA 15177 || || || |||||||| |||||| Sbjct 3120 CAACGTCTTAACAAAAATCTGCATA 3096 >seq156932 Length=6713 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || || | ||| || | || | ||| ||||| || || || || ||||||||||| Sbjct 3757 CCTCCCCTCAACCTCAGCACAAGATGCAGGGTCGATTCCTTCTGGATGTTGTAATCCGCA 3816 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | | | | ||||| | ||||| || || | || | | |||||||| ||| Sbjct 3817 AGAGTCCGCCCATCTTCCAGCTGTTTTCCGGCAAAGATGAGTCTTTGTTGGTCTGGTGGG 3876 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||||||||| ||| ||| ||| || | || || ||||| | || || Sbjct 3877 ATTCCTTCCTTGTCTTGAATCTTGGCTTTCACGTTGTCGATGGTATCCGAGCTCTCGACT 3936 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || || || || || || || || ||||| || ||||| |||||| Sbjct 3937 TCCAAAGTGATCGTCTTCCCAGTGAGGGTTTTGACGAAAATCTGCATA 3984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355371357677210