Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27]
463,906 sequences; 661,937,708 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq25275 125 7e-24
seq284040 113 4e-20
seq156932 109 5e-19
seq228143 104 2e-17
seq276382 87.8 2e-12
>seq25275
Length=8276
Score = 125 bits (138), Expect = 7e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
|| || | ||| || | ||||| || | || ||||| || || || ||||||||| ||
Sbjct 5245 CCGCCTCTTAAACGAAGAACCAAGTGAAGGGTGGACTCCTTCTGTATGTTGTAATCGGCC 5186
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| |||||| || || ||||| || || || ||||||| | |||||| || || ||
Sbjct 5185 AAAGTGCGACCGTCCTCGAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGA 5126
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
|| ||||||||||| ||||||| ||| | | |||| ||||||| |||||||||
Sbjct 5125 ATACCCTCCTTGTCTTGGATTTTCGCCTTCACGTTATCGATAGTGTCCGAGCTCTCGACT 5066
Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| | || | ||||| || || || ||||| ||||| || |||||
Sbjct 5065 TCCAACGTGATGGTTTTCCCTGTTAGGGTTTTGACAAAGATTTGCAT 5019
Score = 111 bits (122), Expect = 1e-19
Identities = 164/229 (72%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| | ||||| | |||||||| | || || || || || ||||| || ||| |
Sbjct 5929 CCACCCCTCAATCGGAGTACCAAATGCAGAGTCGATTCCTTCTGGATATTATAGTCGGCA 5870
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| ||| || ||| || ||||| || || || |||||| | |||||| || || ||
Sbjct 5869 AGCGTACGGCCATCCTCAAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCTGGTGGG 5810
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA--GTTGTTCGACGGTGTCCGTACTCTCGA 127064
|| |||||||| ||| ||| ||| |||| | ||||| | | |||||| | ||||||||
Sbjct 5809 ATACCCTCCTTATCCTGGATCTTC-GCTTTAACGTTGT-CAATGGTGTCGGAACTCTCGA 5752
Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|||| | || | || || ||||| | || || ||||| ||||||||
Sbjct 5751 CTTCCAATGTGATAGTCTTCCCGGTTAAGGTCTTCACAAAGATCTGCAT 5703
Score = 98.7 bits (108), Expect = 9e-16
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
|||||||| | || | |||||||| | |||||||| || || || || ||||| |
Sbjct 6157 CCACCGCGAAGACGAAGAACCAAATGAAGGGTAGACTCCTTCTGGATGTTATAATCCGCA 6098
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| || | ||| || ||||| || ||||| | |||| | ||||||||| || ||
Sbjct 6097 AGAGTCCTTCCATCCTCAAGCTGCTTCCCAGCAAAAATCAGCCTCTGCTGATCCGGTGGG 6038
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
|| |||||||||||| || ||| || | | |||| ||||||| |||||| ||
Sbjct 6037 ATCCCCTCCTTGTCCTGAATCTTCGCTTTCACATTGTCGATCGTGTCCGAACTCTCCACC 5978
Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| | || | || || || |||| || || ||||| ||||||||
Sbjct 5977 TCCAGCGTGATGGTCTTCCCTGTCAACGTCTTAACAAAGATCTGCAT 5931
Score = 93.3 bits (102), Expect = 4e-14
Identities = 159/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
|| || | ||| || | ||||| || | || ||||| || || || || || ||| |
Sbjct 5017 CCGCCTCTTAAACGAAGAACCAAGTGAAGGGTTGACTCCTTCTGGATGTTATAGTCGGCA 4958
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| || || || || ||||| ||||| || |||||| || |||||| || || ||
Sbjct 4957 AGAGTACGGCCGTCCTCGAGCTGCTTTCCGGCAAAGATCAGTCTCTGCTGGTCTGGGGGA 4898
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065
|| || |||||||| ||||| ||| | ||||| | | |||||| | || |||||
Sbjct 4897 ATACCTTCCTTGTCTTGAATTTTAGCCTTCACGTTGT-CAATGGTGTCAGAGCTTTCGAC 4839
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| | || | ||||||||||| || ||||| ||||| || |||||
Sbjct 4838 CTCCAGCGTGATGGTTTTGCCGGTGAGGGTTTTGACAAAGATTTGCAT 4791
>seq284040
Length=2693
Score = 113 bits (124), Expect = 4e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
|| ||||| | || | ||||| ||| | || || || || || || ||||| || |
Sbjct 529 CCGCCGCGAAGCCGTAGCACCAGATGAAGAGTCGATTCCTTCTGGATGTTGTAGTCCGCT 470
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| || | || || ||||| ||||| ||| |||| | |||||||||||||||||
Sbjct 469 AGGGTTCTGCCGTCCTCCAGCTGCTTTCCGGCGAAGATGAGGCGCTGCTGATCGGGAGGA 410
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
|| || ||||||||| ||| ||| ||||| | |||| || || | ||||||||
Sbjct 409 ATTCCTTCCTTGTCCTGGATCTTCGCCTTGACATTGTCGATCGTATCGGAGCTCTCGACC 350
Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| | || | ||||||||||| || ||||| || || ||||||||
Sbjct 349 TCCAGAGTGATTGTTTTGCCGGTTAGGGTTTTGACGAAGATCTGCAT 303
Score = 95.1 bits (104), Expect = 1e-14
Identities = 114/155 (74%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018
|| || ||||| || || ||| |||| | ||||||||||| ||||| || || ||||||
Sbjct 685 TCCTCCAGCTGCTTCCCGGCGAAGATGAGACGCTGCTGATCCGGAGGAATTCCTTCCTTG 626
Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078
||| ||| ||| ||||| | |||| || || | |||||||| || | || |
Sbjct 625 TCCTGGATCTTCGCCTTGACGTTATCGATCGTATCGGAGCTCTCGACCTCCAGAGTGATG 566
Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| |||||||| || ||||| || || ||||||||
Sbjct 565 GTCTTGCCGGTTAGGGTTTTGACGAAGATCTGCAT 531
>seq156932
Length=6713
Score = 109 bits (120), Expect = 5e-19
Identities = 163/229 (71%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | || | ||||| || | || ||||| || || || ||||| || |
Sbjct 3985 CCACCACGGAGACGGAGGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCCGCA 4044
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| || || || || || ||||| || ||| |||||||||||||||| || || ||
Sbjct 4045 AGAGTACGGCCGTCCTCGAGTTGTTTACCGGCGAAGATCAATCGCTGCTGGTCTGGGGGG 4104
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065
||||| |||||||| ||| || ||||| |||| |||| |||||| | || || ||
Sbjct 4105 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTG-TCGATGGTGTCAGAGCTTTCTAC 4163
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114
||| | || | ||||||||||||| || || || || || ||||||
Sbjct 4164 TTCAAGAGTGATGGTTTTGCCGGTCAAGGTCTTGACGAAGATTTGCATG 4212
Score = 93.3 bits (102), Expect = 4e-14
Identities = 141/198 (71%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| ||||| || || ||||||||||| | | || ||| ||| || | ||| || ||
Sbjct 3559 GTCGACTCCTTCTGGATATTGTAATCCGCAAGAGTACGACCATCCTCCAACTGCTTCCCT 3618
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTG-CTT 127035
||| | ||||| | |||||| || || || || || ||||| ||| ||| | | || |||
Sbjct 3619 GCGAATATCAACCTCTGCTGGTCTGGTGGAATCCCTTCCTTATCC-TGAATCTTTGCCTT 3677
Query 127036 GAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095
| | || | ||| |||| ||||| || || | ||| | ||| || ||||| | |||
Sbjct 3678 CACATTGTCAATGGTATCCGAGCTCTCCACCTCCAAGGTGATCGTCTTCCCGGTTAAAGT 3737
Query 127096 TTTTACAAAAATCTGCAT 127113
|| || |||||||||||
Sbjct 3738 CTTGACGAAAATCTGCAT 3755
Score = 89.7 bits (98), Expect = 5e-13
Identities = 151/215 (70%), Gaps = 4/215 (2%)
Strand=Plus/Plus
Query 126901 CAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATC 126960
|| ||| | ||| | || || || || || || |||||||| | | || || |||
Sbjct 3771 CAGCACAAGATGCAGGGTCGATTCCTTCTGGATGTTGTAATCCGCAAGAGTCCGCCCATC 3830
Query 126961 GTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 127020
|| ||||||||||| || |||| | || || || || || || || || ||||||||
Sbjct 3831 TTCCAGCTGTTTTCCGGCAAAGATGAGTCTTTGTTGGTCTGGTGGGATTCCTTCCTTGTC 3890
Query 127021 CGTGATTTTCTGCTTGA--GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078
||| | | |||| ||||| ||| ||| |||| ||||||||||| | || | |
Sbjct 3891 T-TGAATCTTGGCTTTCACGTTGT-CGATGGTATCCGAGCTCTCGACTTCCAAAGTGATC 3948
Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| || || || || ||||| || |||||||||||
Sbjct 3949 GTCTTCCCAGTGAGGGTTTTGACGAAAATCTGCAT 3983
>seq228143
Length=6931
Score = 104 bits (114), Expect = 2e-17
Identities = 149/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963
||| | ||| | || ||||| || || || |||||||| ||| ||| || ||| ||
Sbjct 3306 CACAAGATGAAGGGTCGACTCCTTCTGGATGTTGTAATCAGCCAACGTACGCCCATCTTC 3247
Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023
| || || ||||| ||||||| | |||||| || || || ||||| ||||| |||
Sbjct 3246 CAATTGCTTCCCAGCAAAGATCAACCTCTGCTGGTCCGGTGGGATGCCTTCCTTATCCTG 3187
Query 127024 GATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083
||| || ||| | | || | |||||||| ||||||||| || | || | || ||
Sbjct 3186 GATCTTAGCCTTCACATTGTCAATGGTGTCCGAACTCTCGACCTCCAAAGTGATGGTCTT 3127
Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| |||| || || ||||||||||||||
Sbjct 3126 TCCAGTCAACGTCTTAACAAAAATCTGCAT 3097
Score = 102 bits (112), Expect = 8e-17
Identities = 161/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | || | ||||| || | || ||||| || || || ||||| ||| |
Sbjct 2867 CCACCACGAAGACGGAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCA 2808
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| || || || || ||||| ||||| ||| | || | || |||||| || |||||
Sbjct 2807 AGGGTTCGGCCGTCTTCCAGCTGCTTTCCGGCGAAAATAAGTCTCTGCTGGTCTGGAGGG 2748
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065
||||| || ||||| ||| || ||||| ||||| | | |||||| | || || ||
Sbjct 2747 ATGCCTTCTTTGTCTTGGATCTTGGCCTTGACGTTGT-CAATGGTGTCGGAGCTTTCAAC 2689
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
||| | || | || || ||||||| ||||| ||||||||||||||
Sbjct 2688 TTCTAATGTGATGGTCTTTCCGGTCAAGGTTTTCACAAAAATCTGCAT 2641
Score = 86.0 bits (94), Expect = 6e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | || | |||| ||| | || ||||| || || || ||||| || |
Sbjct 3095 CCACCACGAAGACGGAGGACCAGATGGAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCA 3036
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| || || ||| || |||||||| ||||| ||||||| | ||| || || || ||
Sbjct 3035 AGGGTTCGGCCATCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGTTGGTCTGGTGGG 2976
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
||||| ||||| || ||| || || | | || | |||||| | |||||| ||
Sbjct 2975 ATGCCTTCCTTATCTTGGATCTTAGCTTTCACATTATCAATGGTGTCTGAACTCTCAACC 2916
Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| | || | || || ||||||| || || || |||||||||||
Sbjct 2915 TCCAAAGTGATGGTCTTTCCGGTCAAGGTCTTAACGAAAATCTGCAT 2869
>seq276382
Length=2823
Score = 87.8 bits (96), Expect = 2e-12
Identities = 138/195 (71%), Gaps = 2/195 (1%)
Strand=Plus/Minus
Query 126920 GACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCG 126979
||||| || || || |||||||| ||| ||| || ||| || | || || || |
Sbjct 2114 GACTCCTTCTGGATGTTGTAATCAGCCAACGTACGGCCATCTTCCAATTGCTTCCCGACA 2055
Query 126980 TAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-G 127038
||||||| | || || || || || ||||| ||||| ||| ||| | ||| | |
Sbjct 2054 AAGATCAACCTCTTCTAGTCCGGTGGGATGCCTTCCTTATCCTGGATCATAGCCTTCACG 1995
Query 127039 TTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTT 127098
|||| | |||||||||| |||||| || || | || | || || || |||| ||| ||
Sbjct 1994 TTGT-CAACGGTGTCCGAACTCTCAACCTCCAAAGTGATGGTCTTTCCAGTCAAAGTCTT 1936
Query 127099 TACAAAAATCTGCAT 127113
||||||||||||||
Sbjct 1935 AACAAAAATCTGCAT 1921
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 472743454073440
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