Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq25275 125 7e-24 seq284040 113 4e-20 seq156932 109 5e-19 seq228143 104 2e-17 seq276382 87.8 2e-12 >seq25275 Length=8276 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || || | ||| || | ||||| || | || ||||| || || || ||||||||| || Sbjct 5245 CCGCCTCTTAAACGAAGAACCAAGTGAAGGGTGGACTCCTTCTGTATGTTGTAATCGGCC 5186 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || ||||| || || || ||||||| | |||||| || || || Sbjct 5185 AAAGTGCGACCGTCCTCGAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGA 5126 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || ||||||||||| ||||||| ||| | | |||| ||||||| ||||||||| Sbjct 5125 ATACCCTCCTTGTCTTGGATTTTCGCCTTCACGTTATCGATAGTGTCCGAGCTCTCGACT 5066 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | ||||| || || || ||||| ||||| || ||||| Sbjct 5065 TCCAACGTGATGGTTTTCCCTGTTAGGGTTTTGACAAAGATTTGCAT 5019 Score = 111 bits (122), Expect = 1e-19 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| | ||||| | |||||||| | || || || || || ||||| || ||| | Sbjct 5929 CCACCCCTCAATCGGAGTACCAAATGCAGAGTCGATTCCTTCTGGATATTATAGTCGGCA 5870 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||| || ||| || ||||| || || || |||||| | |||||| || || || Sbjct 5869 AGCGTACGGCCATCCTCAAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCTGGTGGG 5810 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA--GTTGTTCGACGGTGTCCGTACTCTCGA 127064 || |||||||| ||| ||| ||| |||| | ||||| | | |||||| | |||||||| Sbjct 5809 ATACCCTCCTTATCCTGGATCTTC-GCTTTAACGTTGT-CAATGGTGTCGGAACTCTCGA 5752 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| | || | || || ||||| | || || ||||| |||||||| Sbjct 5751 CTTCCAATGTGATAGTCTTCCCGGTTAAGGTCTTCACAAAGATCTGCAT 5703 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || | |||||||| | |||||||| || || || || ||||| | Sbjct 6157 CCACCGCGAAGACGAAGAACCAAATGAAGGGTAGACTCCTTCTGGATGTTATAATCCGCA 6098 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || | ||| || ||||| || ||||| | |||| | ||||||||| || || Sbjct 6097 AGAGTCCTTCCATCCTCAAGCTGCTTCCCAGCAAAAATCAGCCTCTGCTGATCCGGTGGG 6038 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || |||||||||||| || ||| || | | |||| ||||||| |||||| || Sbjct 6037 ATCCCCTCCTTGTCCTGAATCTTCGCTTTCACATTGTCGATCGTGTCCGAACTCTCCACC 5978 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || || || |||| || || ||||| |||||||| Sbjct 5977 TCCAGCGTGATGGTCTTCCCTGTCAACGTCTTAACAAAGATCTGCAT 5931 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || || | ||| || | ||||| || | || ||||| || || || || || ||| | Sbjct 5017 CCGCCTCTTAAACGAAGAACCAAGTGAAGGGTTGACTCCTTCTGGATGTTATAGTCGGCA 4958 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || || || ||||| ||||| || |||||| || |||||| || || || Sbjct 4957 AGAGTACGGCCGTCCTCGAGCTGCTTTCCGGCAAAGATCAGTCTCTGCTGGTCTGGGGGA 4898 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || |||||||| ||||| ||| | ||||| | | |||||| | || ||||| Sbjct 4897 ATACCTTCCTTGTCTTGAATTTTAGCCTTCACGTTGT-CAATGGTGTCAGAGCTTTCGAC 4839 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | ||||||||||| || ||||| ||||| || ||||| Sbjct 4838 CTCCAGCGTGATGGTTTTGCCGGTGAGGGTTTTGACAAAGATTTGCAT 4791 >seq284040 Length=2693 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || ||||| | || | ||||| ||| | || || || || || || ||||| || | Sbjct 529 CCGCCGCGAAGCCGTAGCACCAGATGAAGAGTCGATTCCTTCTGGATGTTGTAGTCCGCT 470 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || | || || ||||| ||||| ||| |||| | ||||||||||||||||| Sbjct 469 AGGGTTCTGCCGTCCTCCAGCTGCTTTCCGGCGAAGATGAGGCGCTGCTGATCGGGAGGA 410 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || ||||||||| ||| ||| ||||| | |||| || || | |||||||| Sbjct 409 ATTCCTTCCTTGTCCTGGATCTTCGCCTTGACATTGTCGATCGTATCGGAGCTCTCGACC 350 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | ||||||||||| || ||||| || || |||||||| Sbjct 349 TCCAGAGTGATTGTTTTGCCGGTTAGGGTTTTGACGAAGATCTGCAT 303 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || ||| |||| | ||||||||||| ||||| || || |||||| Sbjct 685 TCCTCCAGCTGCTTCCCGGCGAAGATGAGACGCTGCTGATCCGGAGGAATTCCTTCCTTG 626 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| ||| ||||| | |||| || || | |||||||| || | || | Sbjct 625 TCCTGGATCTTCGCCTTGACGTTATCGATCGTATCGGAGCTCTCGACCTCCAGAGTGATG 566 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || |||||||| || ||||| || || |||||||| Sbjct 565 GTCTTGCCGGTTAGGGTTTTGACGAAGATCTGCAT 531 >seq156932 Length=6713 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| || | || ||||| || || || ||||| || | Sbjct 3985 CCACCACGGAGACGGAGGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCCGCA 4044 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || || || || ||||| || ||| |||||||||||||||| || || || Sbjct 4045 AGAGTACGGCCGTCCTCGAGTTGTTTACCGGCGAAGATCAATCGCTGCTGGTCTGGGGGG 4104 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||| |||||||| ||| || ||||| |||| |||| |||||| | || || || Sbjct 4105 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTG-TCGATGGTGTCAGAGCTTTCTAC 4163 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 ||| | || | ||||||||||||| || || || || || |||||| Sbjct 4164 TTCAAGAGTGATGGTTTTGCCGGTCAAGGTCTTGACGAAGATTTGCATG 4212 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || ||||||||||| | | || ||| ||| || | ||| || || Sbjct 3559 GTCGACTCCTTCTGGATATTGTAATCCGCAAGAGTACGACCATCCTCCAACTGCTTCCCT 3618 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTG-CTT 127035 ||| | ||||| | |||||| || || || || || ||||| ||| ||| | | || ||| Sbjct 3619 GCGAATATCAACCTCTGCTGGTCTGGTGGAATCCCTTCCTTATCC-TGAATCTTTGCCTT 3677 Query 127036 GAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | | || | ||| |||| ||||| || || | ||| | ||| || ||||| | ||| Sbjct 3678 CACATTGTCAATGGTATCCGAGCTCTCCACCTCCAAGGTGATCGTCTTCCCGGTTAAAGT 3737 Query 127096 TTTTACAAAAATCTGCAT 127113 || || ||||||||||| Sbjct 3738 CTTGACGAAAATCTGCAT 3755 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/215 (70%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 126901 CAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATC 126960 || ||| | ||| | || || || || || || |||||||| | | || || ||| Sbjct 3771 CAGCACAAGATGCAGGGTCGATTCCTTCTGGATGTTGTAATCCGCAAGAGTCCGCCCATC 3830 Query 126961 GTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 127020 || ||||||||||| || |||| | || || || || || || || || |||||||| Sbjct 3831 TTCCAGCTGTTTTCCGGCAAAGATGAGTCTTTGTTGGTCTGGTGGGATTCCTTCCTTGTC 3890 Query 127021 CGTGATTTTCTGCTTGA--GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| | | |||| ||||| ||| ||| |||| ||||||||||| | || | | Sbjct 3891 T-TGAATCTTGGCTTTCACGTTGT-CGATGGTATCCGAGCTCTCGACTTCCAAAGTGATC 3948 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || || || || ||||| || ||||||||||| Sbjct 3949 GTCTTCCCAGTGAGGGTTTTGACGAAAATCTGCAT 3983 >seq228143 Length=6931 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 ||| | ||| | || ||||| || || || |||||||| ||| ||| || ||| || Sbjct 3306 CACAAGATGAAGGGTCGACTCCTTCTGGATGTTGTAATCAGCCAACGTACGCCCATCTTC 3247 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 | || || ||||| ||||||| | |||||| || || || ||||| ||||| ||| Sbjct 3246 CAATTGCTTCCCAGCAAAGATCAACCTCTGCTGGTCCGGTGGGATGCCTTCCTTATCCTG 3187 Query 127024 GATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083 ||| || ||| | | || | |||||||| ||||||||| || | || | || || Sbjct 3186 GATCTTAGCCTTCACATTGTCAATGGTGTCCGAACTCTCGACCTCCAAAGTGATGGTCTT 3127 Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || |||| || || |||||||||||||| Sbjct 3126 TCCAGTCAACGTCTTAACAAAAATCTGCAT 3097 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| || | || ||||| || || || ||||| ||| | Sbjct 2867 CCACCACGAAGACGGAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCA 2808 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || || || ||||| ||||| ||| | || | || |||||| || ||||| Sbjct 2807 AGGGTTCGGCCGTCTTCCAGCTGCTTTCCGGCGAAAATAAGTCTCTGCTGGTCTGGAGGG 2748 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||| || ||||| ||| || ||||| ||||| | | |||||| | || || || Sbjct 2747 ATGCCTTCTTTGTCTTGGATCTTGGCCTTGACGTTGT-CAATGGTGTCGGAGCTTTCAAC 2689 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | || | || || ||||||| ||||| |||||||||||||| Sbjct 2688 TTCTAATGTGATGGTCTTTCCGGTCAAGGTTTTCACAAAAATCTGCAT 2641 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||| ||| | || ||||| || || || ||||| || | Sbjct 3095 CCACCACGAAGACGGAGGACCAGATGGAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCA 3036 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || |||||||| ||||| ||||||| | ||| || || || || Sbjct 3035 AGGGTTCGGCCATCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGTTGGTCTGGTGGG 2976 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||| ||||| || ||| || || | | || | |||||| | |||||| || Sbjct 2975 ATGCCTTCCTTATCTTGGATCTTAGCTTTCACATTATCAATGGTGTCTGAACTCTCAACC 2916 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || || ||||||| || || || ||||||||||| Sbjct 2915 TCCAAAGTGATGGTCTTTCCGGTCAAGGTCTTAACGAAAATCTGCAT 2869 >seq276382 Length=2823 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 126920 GACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCG 126979 ||||| || || || |||||||| ||| ||| || ||| || | || || || | Sbjct 2114 GACTCCTTCTGGATGTTGTAATCAGCCAACGTACGGCCATCTTCCAATTGCTTCCCGACA 2055 Query 126980 TAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-G 127038 ||||||| | || || || || || ||||| ||||| ||| ||| | ||| | | Sbjct 2054 AAGATCAACCTCTTCTAGTCCGGTGGGATGCCTTCCTTATCCTGGATCATAGCCTTCACG 1995 Query 127039 TTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTT 127098 |||| | |||||||||| |||||| || || | || | || || || |||| ||| || Sbjct 1994 TTGT-CAACGGTGTCCGAACTCTCAACCTCCAAAGTGATGGTCTTTCCAGTCAAAGTCTT 1936 Query 127099 TACAAAAATCTGCAT 127113 |||||||||||||| Sbjct 1935 AACAAAAATCTGCAT 1921 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472743454073440