Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq62239 105 6e-18 seq284040 104 2e-17 seq277754 104 2e-17 seq118537 93.3 4e-14 seq25275 93.3 4e-14 seq259261 89.7 5e-13 seq228143 89.7 5e-13 seq156932 89.7 5e-13 seq268484 86.0 6e-12 >seq62239 Length=9780 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || |||||||| | | || || || || || || ||||| ||||| || || ||| Sbjct 5331 CCGCCGCGGAGGCGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCT 5390 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| | || || | || || || ||| | || | ||||||||||||||||| Sbjct 5391 AGGGTCCTGCCGTCCTCGAGCTGCTTCCCGGCGAAGATGAGGCGTTGCTGGTCCGGCGGG 5450 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 |||||||| || ||||| || || |||| || | ||||||||| || ||||| Sbjct 5451 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAGGATTCGACC 5510 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || || | ||||| |||||||| ||||| || || || |||||| Sbjct 5511 TCTAGGGTTATGGTTTTCCCGGTTAGGGTTTTCACGAAGATCTGCATC 5558 >seq284040 Length=2693 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATC- 45169 || || ||||| |||| | ||| ||||| || || |||||||| ||||| || || || Sbjct 532 ATCCCGCCGCGAAGCCGTAGCACCAGATGAAGAGTCGATTCCTTCTGGATGTTGTAGTCC 473 Query 45170 GCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGG 45229 ||| | |||| | || |||| || ||||| ||| | || | || ||||| || || Sbjct 472 GCT-AGGGTTCTGCCGTCCTCCAGCTGCTTTCCGGCGAAGATGAGGCGCTGCTGATCGGG 414 Query 45230 CGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTC 45289 ||||| ||||| || || || || || |||| || | || ||||| ||| Sbjct 413 AGGAATTCCTTCCTTGTCCTGGATCTTCGCCTTGACATTGTCGATCGTATCGGAGCTCTC 354 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| || ||||| | |||||||||||||| ||||| || || || ||||| Sbjct 353 GACCTCCAGAGTGATTGTTTTGCCGGTTAGGGTTTTGACGAAGATCTGCAT 303 Score = 93.3 bits (102), Expect = 4e-14 Identities = 166/237 (70%), Gaps = 4/237 (2%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATC- 45169 || || |||||||| | | || || || || || || ||||| ||||| || || || Sbjct 760 ATCCCGCCGCGGAGGCGTAGAACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCC 701 Query 45170 GCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGG 45229 ||| | |||| | || |||| || || || ||| | || | || ||||| ||||| Sbjct 700 GCT-AGGGTTCTGCCGTCCTCCAGCTGCTTCCCGGCGAAGATGAGACGCTGCTGATCCGG 642 Query 45230 CGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACT 45288 ||||| ||||| || || || || || |||| || | || | || ||||| || Sbjct 641 AGGAATTCCTTCCTTGTCCTGGATCTTCGCCTTGA-CGTTATCGATCGTATCGGAGCTCT 583 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCGC 45345 |||| || ||||| | || ||||||||||| ||||| || || || |||||| ||| Sbjct 582 CGACCTCCAGAGTGATGGTCTTGCCGGTTAGGGTTTTGACGAAGATCTGCATCCCGC 526 Score = 87.8 bits (96), Expect = 2e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||| || ||||| || || ||||| ||||| || ||||| | || ||| || Sbjct 1196 CACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCCGCCAGAGTCCGGCCATCTTC 1137 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 || || ||||| || ||||||| | ||||||||||| ||||| || |||||||| || Sbjct 1136 CAGCTGCTTTCCGGCAAATATCAACCTCTGCTGGTCCGGTGGAATCCCCTCTTTATCCTG 1077 Query 45251 AATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 ||| || |||| || | || ||||| ||| || || ||||||| ||| || Sbjct 1076 AATCTTGGCCTTGACATTATCGATCGTATCGGAGCTCTCCACCTCCAGAGTAATCGTCTT 1017 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||||| | || || || || || |||||| Sbjct 1016 CCCGGTCAACGTCTTCACGAATATCTGCATC 986 >seq277754 Length=2847 Score = 104 bits (114), Expect = 2e-17 Identities = 150/210 (71%), Gaps = 10/210 (5%) Strand=Plus/Minus Query 45129 AACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCG 45188 ||||| ||||| ||||| || ||||||||||| || || ||| | |||| || || Sbjct 2788 AACAC-AGATGGAGCGTAGACTCCTTTTGGATGTTGTAGTCGGCTAGGGTTCTACCGTCC 2730 Query 45189 TCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCT 45248 || | ||||||||| ||| | || | |||||||||||||| || |||||||| || || Sbjct 2729 TCGAGTTGTTTTCCGGCGAAGATGAGCCGTTGCTGGTCCGGTGGGATGCCTTCCTTGTC- 2671 Query 45249 TGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTT 45308 | ||| ||| | | ||||||||| ||||| || || || || | || Sbjct 2670 -GGCTTTCACGTT-------GTAGATGGTGTCGGAGGACTCAACCTCCAGCGTTATGGTC 2619 Query 45309 TTGCCGGTTAGAGTTTTTACAAAAATTTGC 45338 ||||||||||| ||||| || || || ||| Sbjct 2618 TTGCCGGTTAGGGTTTTCACGAAGATCTGC 2589 >seq118537 Length=769 Score = 93.3 bits (102), Expect = 4e-14 Identities = 130/180 (72%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 45148 ATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGT 45207 ||||||| |||||||| || ||| | |||| | || || | |||||| | || Sbjct 278 ATTCCTTCTGGATATTGTAGTCGGCTAGGGTTCTGCCGTCCTCGAGCTGTTTTTCGGCAA 337 Query 45208 ATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCG 45267 | | | ||||||||||||||||| | |||||| || ||||| || || ||| | || Sbjct 338 AGTTGAGGCGTTGCTGGTCCGGCGGGAAGCCTTCCTTGTCTTGGATCTTGGCTTTCA-CG 396 Query 45268 CT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTT 45326 | || ||||||||||| |||||||| || | || | || |||||| |||| |||||| Sbjct 397 TTGTCGACGGTGTCGGAGGACTCGACCTCCAACGTGATGGTCTTGCCGATTAGGGTTTTT 456 >seq25275 Length=8276 Score = 93.3 bits (102), Expect = 4e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || ||||| ||||| ||||| ||||| ||| | || || || | || Sbjct 4993 TGAAGGGTTGACTCCTTCTGGATGTTATAGTCGGCAAGAGTACGGCCGTCCTCGAGCTGC 4934 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 ||||| || | |||| || |||||||| || ||||| ||||| || ||||||||||| Sbjct 4933 TTTCCGGCAAAGATCAGTCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCTTGAATTTTA 4874 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 || | || | || | |||||| || ||||| || || || | ||||||||||| Sbjct 4873 GCCTTCA-CGTTGTCAATGGTGTCAGAGCTTTCGACCTCCAGCGTGATGGTTTTGCCGGT 4815 Query 45317 TAGAGTTTTTACAAAAATTTGCATC 45341 || ||||| ||||| ||||||||| Sbjct 4814 GAGGGTTTTGACAAAGATTTGCATC 4790 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 45137 ATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTG 45196 |||||| || |||||||| ||||||||||| ||| | || ||| || | || Sbjct 5906 ATGCAGAGTCGATTCCTTCTGGATATTATAGTCGGCAAGCGTACGGCCATCCTCAAGCTG 5847 Query 45197 TTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTT 45256 || ||||| | |||| | |||||||| || || || || || ||||| || | | | Sbjct 5846 CTTGCCTGCAAAGATCAGCCTCTGCTGGTCTGGTGGGATACCCTCCTTATCCTGGA-TCT 5788 Query 45257 TTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGG 45315 | | || | || | || | |||||||||| ||||||||| | || | || || |||| Sbjct 5787 TCGCTTTAACGTTGTCAATGGTGTCGGAACTCTCGACTTCCAATGTGATAGTCTTCCCGG 5728 Query 45316 TTAGAGTTTTTACAAAAATTTGCAT 45340 ||| || || ||||| || ||||| Sbjct 5727 TTAAGGTCTTCACAAAGATCTGCAT 5703 >seq259261 Length=7884 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || |||||||| | | ||| || || || || || ||||| ||||| || || ||| Sbjct 2602 CCACCGCGGAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCT 2543 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| | || || | ||||| || ||| | || | || |||||||||||||| Sbjct 2542 AGGGTCCTGCCGTCCTCGAGCTGTTTCCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGG 2483 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 |||||||| || || || || || || | || | || | |||||||| || ||||| Sbjct 2482 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCA-CGTTGTCGATCGTGTCGGAGGATTCGAC 2424 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || | || | ||| || || ||||| ||||| || || || ||||| Sbjct 2423 CTCCAACGTGATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 2376 >seq228143 Length=6931 Score = 89.7 bits (98), Expect = 5e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATC- 45169 || ||||| | |||| | ||| ||||| || || || ||||| ||||| || ||||| Sbjct 3326 ATCCCTCCCCTTAGCCGAAGCACAAGATGAAGGGTCGACTCCTTCTGGATGTTGTAATCA 3267 Query 45170 GCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGG 45229 || ||| | ||| |||||||| || || || | ||||| | ||||||||||| Sbjct 3266 GCCAACG-TACGCCCATCTTCCAATTGCTTCCCAGCAAAGATCAACCTCTGCTGGTCCGG 3208 Query 45230 CGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTC 45289 || |||||||| ||||| || || || || | || | |||||| ||| ||| Sbjct 3207 TGGGATGCCTTCCTTATCCTGGATCTTAGCCTTCACATTGTCAATGGTGTCCGAACTCTC 3148 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| || | ||| | || || || || | || || |||||||| ||||| Sbjct 3147 GACCTCCAAAGTGATGGTCTTTCCAGTCAACGTCTTAACAAAAATCTGCAT 3097 Score = 82.4 bits (90), Expect = 7e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || || ||||| ||||| || || ||| | |||| || |||| || Sbjct 2843 TGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTTCGGCCGTCTTCCAGCTGC 2784 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 ||||| ||| | || | || |||||||| || || ||||||||||| ||||| || || Sbjct 2783 TTTCCGGCGAAAATAAGTCTCTGCTGGTCTGGAGGGATGCCTTCTTTGTCTTGGATCTTG 2724 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 |||| || | || | ||||||||| || ||||| | || | || || ||||| Sbjct 2723 GCCTTGA-CGTTGTCAATGGTGTCGGAGCTTTCAACTTCTAATGTGATGGTCTTTCCGGT 2665 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 | ||||| |||||||| ||||| Sbjct 2664 CAAGGTTTTCACAAAAATCTGCAT 2641 >seq156932 Length=6713 Score = 89.7 bits (98), Expect = 5e-13 Identities = 115/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || || | |||||| || ||| | |||||||| |||||||| || || |||||||| || Sbjct 4057 TCCTCGAGTTGTTTACCGGCGAAGATCAATCGCTGCTGGTCTGGGGGGATGCCTTCCTTG 4116 Query 45246 TCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304 ||||| || || |||| || | || | |||||| || || ||||| ||||| | Sbjct 4117 TCTTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCAGAGCTTTCTACTTCAAGAGTGAT 4175 Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||||||||| | || || || || |||||||| Sbjct 4176 GGTTTTGCCGGTCAAGGTCTTGACGAAGATTTGCAT 4211 >seq268484 Length=6331 Score = 86.0 bits (94), Expect = 6e-12 Identities = 108/146 (74%), Gaps = 2/146 (1%) Strand=Plus/Plus Query 45197 TTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTT 45256 |||||| ||| | || | || | |||||||| ||| |||||||| || ||||| || || Sbjct 984 TTTTCCGGCGAAGATGAGGCGCTACTGGTCCGACGGGATGCCTTCCTTGTCTTGGATCTT 1043 Query 45257 TTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGG 45315 ||| | || | || | ||||||||| |||||||| || | || | | ||||||| Sbjct 1044 GGCTTTCA-CGTTGTCGATGGTGTCGGAGGACTCGACCTCCAACGTGATGGCCTTGCCGG 1102 Query 45316 TTAGAGTTTTTACAAAAATTTGCATC 45341 |||| ||||| || || || |||||| Sbjct 1103 TTAGGGTTTTCACGAAGATCTGCATC 1128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449382112543760