Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27]
463,906 sequences; 661,937,708 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq62239 105 6e-18
seq284040 104 2e-17
seq277754 104 2e-17
seq118537 93.3 4e-14
seq25275 93.3 4e-14
seq259261 89.7 5e-13
seq228143 89.7 5e-13
seq156932 89.7 5e-13
seq268484 86.0 6e-12
>seq62239
Length=9780
Score = 105 bits (116), Expect = 6e-18
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173
|| |||||||| | | || || || || || || ||||| ||||| || || |||
Sbjct 5331 CCGCCGCGGAGGCGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCT 5390
Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233
| ||| | || || | || || || ||| | || | |||||||||||||||||
Sbjct 5391 AGGGTCCTGCCGTCCTCGAGCTGCTTCCCGGCGAAGATGAGGCGTTGCTGGTCCGGCGGG 5450
Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293
|||||||| || ||||| || || |||| || | ||||||||| || |||||
Sbjct 5451 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAGGATTCGACC 5510
Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341
|| || || | ||||| |||||||| ||||| || || || ||||||
Sbjct 5511 TCTAGGGTTATGGTTTTCCCGGTTAGGGTTTTCACGAAGATCTGCATC 5558
>seq284040
Length=2693
Score = 104 bits (114), Expect = 2e-17
Identities = 163/231 (71%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATC- 45169
|| || ||||| |||| | ||| ||||| || || |||||||| ||||| || || ||
Sbjct 532 ATCCCGCCGCGAAGCCGTAGCACCAGATGAAGAGTCGATTCCTTCTGGATGTTGTAGTCC 473
Query 45170 GCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGG 45229
||| | |||| | || |||| || ||||| ||| | || | || ||||| || ||
Sbjct 472 GCT-AGGGTTCTGCCGTCCTCCAGCTGCTTTCCGGCGAAGATGAGGCGCTGCTGATCGGG 414
Query 45230 CGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTC 45289
||||| ||||| || || || || || |||| || | || ||||| |||
Sbjct 413 AGGAATTCCTTCCTTGTCCTGGATCTTCGCCTTGACATTGTCGATCGTATCGGAGCTCTC 354
Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
||| || ||||| | |||||||||||||| ||||| || || || |||||
Sbjct 353 GACCTCCAGAGTGATTGTTTTGCCGGTTAGGGTTTTGACGAAGATCTGCAT 303
Score = 93.3 bits (102), Expect = 4e-14
Identities = 166/237 (70%), Gaps = 4/237 (2%)
Strand=Plus/Minus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATC- 45169
|| || |||||||| | | || || || || || || ||||| ||||| || || ||
Sbjct 760 ATCCCGCCGCGGAGGCGTAGAACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCC 701
Query 45170 GCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGG 45229
||| | |||| | || |||| || || || ||| | || | || ||||| |||||
Sbjct 700 GCT-AGGGTTCTGCCGTCCTCCAGCTGCTTCCCGGCGAAGATGAGACGCTGCTGATCCGG 642
Query 45230 CGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACT 45288
||||| ||||| || || || || || |||| || | || | || ||||| ||
Sbjct 641 AGGAATTCCTTCCTTGTCCTGGATCTTCGCCTTGA-CGTTATCGATCGTATCGGAGCTCT 583
Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCGC 45345
|||| || ||||| | || ||||||||||| ||||| || || || |||||| |||
Sbjct 582 CGACCTCCAGAGTGATGGTCTTGCCGGTTAGGGTTTTGACGAAGATCTGCATCCCGC 526
Score = 87.8 bits (96), Expect = 2e-12
Identities = 146/211 (69%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190
||| || ||||| || || ||||| ||||| || ||||| | || ||| ||
Sbjct 1196 CACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCCGCCAGAGTCCGGCCATCTTC 1137
Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250
|| || ||||| || ||||||| | ||||||||||| ||||| || |||||||| ||
Sbjct 1136 CAGCTGCTTTCCGGCAAATATCAACCTCTGCTGGTCCGGTGGAATCCCCTCTTTATCCTG 1077
Query 45251 AATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310
||| || |||| || | || ||||| ||| || || ||||||| ||| ||
Sbjct 1076 AATCTTGGCCTTGACATTATCGATCGTATCGGAGCTCTCCACCTCCAGAGTAATCGTCTT 1017
Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341
||||| | || || || || || ||||||
Sbjct 1016 CCCGGTCAACGTCTTCACGAATATCTGCATC 986
>seq277754
Length=2847
Score = 104 bits (114), Expect = 2e-17
Identities = 150/210 (71%), Gaps = 10/210 (5%)
Strand=Plus/Minus
Query 45129 AACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCG 45188
||||| ||||| ||||| || ||||||||||| || || ||| | |||| || ||
Sbjct 2788 AACAC-AGATGGAGCGTAGACTCCTTTTGGATGTTGTAGTCGGCTAGGGTTCTACCGTCC 2730
Query 45189 TCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCT 45248
|| | ||||||||| ||| | || | |||||||||||||| || |||||||| || ||
Sbjct 2729 TCGAGTTGTTTTCCGGCGAAGATGAGCCGTTGCTGGTCCGGTGGGATGCCTTCCTTGTC- 2671
Query 45249 TGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTT 45308
| ||| ||| | | ||||||||| ||||| || || || || | ||
Sbjct 2670 -GGCTTTCACGTT-------GTAGATGGTGTCGGAGGACTCAACCTCCAGCGTTATGGTC 2619
Query 45309 TTGCCGGTTAGAGTTTTTACAAAAATTTGC 45338
||||||||||| ||||| || || || |||
Sbjct 2618 TTGCCGGTTAGGGTTTTCACGAAGATCTGC 2589
>seq118537
Length=769
Score = 93.3 bits (102), Expect = 4e-14
Identities = 130/180 (72%), Gaps = 2/180 (1%)
Strand=Plus/Plus
Query 45148 ATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGT 45207
||||||| |||||||| || ||| | |||| | || || | |||||| | ||
Sbjct 278 ATTCCTTCTGGATATTGTAGTCGGCTAGGGTTCTGCCGTCCTCGAGCTGTTTTTCGGCAA 337
Query 45208 ATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCG 45267
| | | ||||||||||||||||| | |||||| || ||||| || || ||| | ||
Sbjct 338 AGTTGAGGCGTTGCTGGTCCGGCGGGAAGCCTTCCTTGTCTTGGATCTTGGCTTTCA-CG 396
Query 45268 CT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTT 45326
| || ||||||||||| |||||||| || | || | || |||||| |||| ||||||
Sbjct 397 TTGTCGACGGTGTCGGAGGACTCGACCTCCAACGTGATGGTCTTGCCGATTAGGGTTTTT 456
>seq25275
Length=8276
Score = 93.3 bits (102), Expect = 4e-14
Identities = 145/205 (71%), Gaps = 2/205 (1%)
Strand=Plus/Minus
Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197
|| || ||||| ||||| ||||| ||||| ||| | || || || | ||
Sbjct 4993 TGAAGGGTTGACTCCTTCTGGATGTTATAGTCGGCAAGAGTACGGCCGTCCTCGAGCTGC 4934
Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257
||||| || | |||| || |||||||| || ||||| ||||| || |||||||||||
Sbjct 4933 TTTCCGGCAAAGATCAGTCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCTTGAATTTTA 4874
Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316
|| | || | || | |||||| || ||||| || || || | |||||||||||
Sbjct 4873 GCCTTCA-CGTTGTCAATGGTGTCAGAGCTTTCGACCTCCAGCGTGATGGTTTTGCCGGT 4815
Query 45317 TAGAGTTTTTACAAAAATTTGCATC 45341
|| ||||| ||||| |||||||||
Sbjct 4814 GAGGGTTTTGACAAAGATTTGCATC 4790
Score = 84.2 bits (92), Expect = 2e-11
Identities = 143/205 (70%), Gaps = 2/205 (1%)
Strand=Plus/Minus
Query 45137 ATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTG 45196
|||||| || |||||||| ||||||||||| ||| | || ||| || | ||
Sbjct 5906 ATGCAGAGTCGATTCCTTCTGGATATTATAGTCGGCAAGCGTACGGCCATCCTCAAGCTG 5847
Query 45197 TTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTT 45256
|| ||||| | |||| | |||||||| || || || || || ||||| || | | |
Sbjct 5846 CTTGCCTGCAAAGATCAGCCTCTGCTGGTCTGGTGGGATACCCTCCTTATCCTGGA-TCT 5788
Query 45257 TTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGG 45315
| | || | || | || | |||||||||| ||||||||| | || | || || ||||
Sbjct 5787 TCGCTTTAACGTTGTCAATGGTGTCGGAACTCTCGACTTCCAATGTGATAGTCTTCCCGG 5728
Query 45316 TTAGAGTTTTTACAAAAATTTGCAT 45340
||| || || ||||| || |||||
Sbjct 5727 TTAAGGTCTTCACAAAGATCTGCAT 5703
>seq259261
Length=7884
Score = 89.7 bits (98), Expect = 5e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173
|| |||||||| | | ||| || || || || || ||||| ||||| || || |||
Sbjct 2602 CCACCGCGGAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCT 2543
Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233
| ||| | || || | ||||| || ||| | || | || ||||||||||||||
Sbjct 2542 AGGGTCCTGCCGTCCTCGAGCTGTTTCCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGG 2483
Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292
|||||||| || || || || || || | || | || | |||||||| || |||||
Sbjct 2482 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCA-CGTTGTCGATCGTGTCGGAGGATTCGAC 2424
Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| | || | ||| || || ||||| ||||| || || || |||||
Sbjct 2423 CTCCAACGTGATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 2376
>seq228143
Length=6931
Score = 89.7 bits (98), Expect = 5e-13
Identities = 160/231 (69%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATC- 45169
|| ||||| | |||| | ||| ||||| || || || ||||| ||||| || |||||
Sbjct 3326 ATCCCTCCCCTTAGCCGAAGCACAAGATGAAGGGTCGACTCCTTCTGGATGTTGTAATCA 3267
Query 45170 GCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGG 45229
|| ||| | ||| |||||||| || || || | ||||| | |||||||||||
Sbjct 3266 GCCAACG-TACGCCCATCTTCCAATTGCTTCCCAGCAAAGATCAACCTCTGCTGGTCCGG 3208
Query 45230 CGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTC 45289
|| |||||||| ||||| || || || || | || | |||||| ||| |||
Sbjct 3207 TGGGATGCCTTCCTTATCCTGGATCTTAGCCTTCACATTGTCAATGGTGTCCGAACTCTC 3148
Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
||| || | ||| | || || || || | || || |||||||| |||||
Sbjct 3147 GACCTCCAAAGTGATGGTCTTTCCAGTCAACGTCTTAACAAAAATCTGCAT 3097
Score = 82.4 bits (90), Expect = 7e-11
Identities = 142/204 (70%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197
|| || || || ||||| ||||| || || ||| | |||| || |||| ||
Sbjct 2843 TGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTTCGGCCGTCTTCCAGCTGC 2784
Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257
||||| ||| | || | || |||||||| || || ||||||||||| ||||| || ||
Sbjct 2783 TTTCCGGCGAAAATAAGTCTCTGCTGGTCTGGAGGGATGCCTTCTTTGTCTTGGATCTTG 2724
Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316
|||| || | || | ||||||||| || ||||| | || | || || |||||
Sbjct 2723 GCCTTGA-CGTTGTCAATGGTGTCGGAGCTTTCAACTTCTAATGTGATGGTCTTTCCGGT 2665
Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340
| ||||| |||||||| |||||
Sbjct 2664 CAAGGTTTTCACAAAAATCTGCAT 2641
>seq156932
Length=6713
Score = 89.7 bits (98), Expect = 5e-13
Identities = 115/156 (74%), Gaps = 2/156 (1%)
Strand=Plus/Plus
Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245
|| || | |||||| || ||| | |||||||| |||||||| || || |||||||| ||
Sbjct 4057 TCCTCGAGTTGTTTACCGGCGAAGATCAATCGCTGCTGGTCTGGGGGGATGCCTTCCTTG 4116
Query 45246 TCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304
||||| || || |||| || | || | |||||| || || ||||| ||||| |
Sbjct 4117 TCTTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCAGAGCTTTCTACTTCAAGAGTGAT 4175
Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
||||||||||| | || || || || ||||||||
Sbjct 4176 GGTTTTGCCGGTCAAGGTCTTGACGAAGATTTGCAT 4211
>seq268484
Length=6331
Score = 86.0 bits (94), Expect = 6e-12
Identities = 108/146 (74%), Gaps = 2/146 (1%)
Strand=Plus/Plus
Query 45197 TTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTT 45256
|||||| ||| | || | || | |||||||| ||| |||||||| || ||||| || ||
Sbjct 984 TTTTCCGGCGAAGATGAGGCGCTACTGGTCCGACGGGATGCCTTCCTTGTCTTGGATCTT 1043
Query 45257 TTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGG 45315
||| | || | || | ||||||||| |||||||| || | || | | |||||||
Sbjct 1044 GGCTTTCA-CGTTGTCGATGGTGTCGGAGGACTCGACCTCCAACGTGATGGCCTTGCCGG 1102
Query 45316 TTAGAGTTTTTACAAAAATTTGCATC 45341
|||| ||||| || || || ||||||
Sbjct 1103 TTAGGGTTTTCACGAAGATCTGCATC 1128
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449382112543760
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