Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq294625 98.7 1e-15 seq275305 95.1 1e-14 seq293582 89.7 6e-13 >seq294625 Length=4757 Score = 98.7 bits (108), Expect = 1e-15 Identities = 178/257 (69%), Gaps = 9/257 (4%) Strand=Plus/Plus Query 127538 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 127597 || ||||| || || || | || || |||||| || || ||||| | ||| || ||| Sbjct 4102 CCTTCGTCTCGTGAAATCAACTCGTTGGAGAAGGTCAATCCAGGCATCAAACCGCGTTTC 4161 Query 127598 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 127657 ||||||||||| || || || || || |||||||| ||||| || || || ||||| Sbjct 4162 TTCAACCAGAAGATAGCGCAGAAGCTTCCCGAGAAGAATATCCCTTCGACGCAAGCGAAG 4221 Query 127658 GCAAATAGACGCTCGGCAAAGGA--GCGGGACTTTGTATCAAACCACTTCATCGCCCACT 127715 |||| | ||| || ||||| || || | | ||| | |||| |||||||||| | Sbjct 4222 GCAATGATACGTTCCGCAAACGACTCCGAGCC-----ATCGATCCACCTCATCGCCCAAT 4276 Query 127716 GTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTTTTCTG 127775 ||||| |||| || || || | ||||| | || ||| || | |||| || | Sbjct 4277 TGGCCTTCTTCTGGACGCAAGGAATGGTCTCCACAGCGCGAAACAGCCTCATCTTGTC-G 4335 Query 127776 ATGGA-TCTTTGATGTA 127791 |||| || |||||||| Sbjct 4336 TTGGAGTCCTTGATGTA 4352 >seq275305 Length=4240 Score = 95.1 bits (104), Expect = 1e-14 Identities = 177/257 (69%), Gaps = 10/257 (4%) Strand=Plus/Minus Query 12734 GTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCGAA 12793 |||||| ||||| ||||| || || || | |||| || || || | || || Sbjct 3665 GTCAAGAATATCTGCACGGTTGGTAGCTGCAACTACAATAATACCTGTGTTCCCTTCAAA 3606 Query 12794 GCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTC---GCGGG 12850 |||||||||||| ||||| || || || | |||||||| | |||||||||| | Sbjct 3605 GCCATCCATCTCGGTCAAAAGCTGGTTCAGCGTTTGTTCTCTTTCATCATTCCCACCTCC 3546 Query 12851 CATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACA 12910 |||||| | | || |||| || || || |||||||| |||| || || ||||| Sbjct 3545 AATACCAGTCCCCCT---TTGCCGCCCAACAGCATCAATTTCATCAACAAACACAATACA 3489 Query 12911 CGGTTGATTTTCACGGGCAACTTC--AAAGATATCTCGCACTCTCTTGGCACCGACACCC 12968 || ||| || ||| |||| |||| ||||| ||||| ||||| ||||| Sbjct 3488 AGGAGCATTCTCCTTGGC--CTTCTTGAAGAGATCTCTAACTCTTGAAGCACCAACACCA 3431 Query 12969 ACAAACATCTCCACAAA 12985 ||||||||||| ||||| Sbjct 3430 ACAAACATCTCAACAAA 3414 >seq293582 Length=2029 Score = 89.7 bits (98), Expect = 6e-13 Identities = 179/262 (68%), Gaps = 5/262 (2%) Strand=Plus/Plus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 ||| || || ||||| | ||||| | ||| || ||||| || || ||||| || || Sbjct 1311 GTGCAGGCCTTCGTCCCTCGAGATCAATTCGTTGGAGAACGTTAGGCCCGGCATCAGGCC 1370 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 |||||||| | |||||| || || || || || ||||||||||| ||||| ||||| Sbjct 1371 GCGCTTCTTGAGCCAGAAGATGGCGCAGAAGCTTCCGGAGAAGAAGATGCCCTCGACACA 1430 Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGC 127710 ||||| || | | ||||| || ||||| |||| || | ||| | || Sbjct 1431 GGCGAAGGCGACGATCCGCTCCGCGAAGGACTCGGAC---CCGTCGATCCAGCGGAGGGC 1487 Query 127711 CCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTT 127770 |||||| ||||| || ||| || |||| ||||| | || | || || ||||| Sbjct 1488 CCACTGGGCCTTCCGCTGGATGCAGGGGATGGTCTCCACGGCGTGGAACAGCCGGTTCTT 1547 Query 127771 TTCTGATGGA-TCTTTGATGTA 127791 || | |||| || |||||||| Sbjct 1548 CTC-GTTGGAGTCCTTGATGTA 1568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 609949579110960