Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27]
463,906 sequences; 661,937,708 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq294625 98.7 1e-15
seq275305 95.1 1e-14
seq293582 89.7 6e-13
>seq294625
Length=4757
Score = 98.7 bits (108), Expect = 1e-15
Identities = 178/257 (69%), Gaps = 9/257 (4%)
Strand=Plus/Plus
Query 127538 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 127597
|| ||||| || || || | || || |||||| || || ||||| | ||| || |||
Sbjct 4102 CCTTCGTCTCGTGAAATCAACTCGTTGGAGAAGGTCAATCCAGGCATCAAACCGCGTTTC 4161
Query 127598 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 127657
||||||||||| || || || || || |||||||| ||||| || || || |||||
Sbjct 4162 TTCAACCAGAAGATAGCGCAGAAGCTTCCCGAGAAGAATATCCCTTCGACGCAAGCGAAG 4221
Query 127658 GCAAATAGACGCTCGGCAAAGGA--GCGGGACTTTGTATCAAACCACTTCATCGCCCACT 127715
|||| | ||| || ||||| || || | | ||| | |||| |||||||||| |
Sbjct 4222 GCAATGATACGTTCCGCAAACGACTCCGAGCC-----ATCGATCCACCTCATCGCCCAAT 4276
Query 127716 GTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTTTTCTG 127775
||||| |||| || || || | ||||| | || ||| || | |||| || |
Sbjct 4277 TGGCCTTCTTCTGGACGCAAGGAATGGTCTCCACAGCGCGAAACAGCCTCATCTTGTC-G 4335
Query 127776 ATGGA-TCTTTGATGTA 127791
|||| || ||||||||
Sbjct 4336 TTGGAGTCCTTGATGTA 4352
>seq275305
Length=4240
Score = 95.1 bits (104), Expect = 1e-14
Identities = 177/257 (69%), Gaps = 10/257 (4%)
Strand=Plus/Minus
Query 12734 GTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCGAA 12793
|||||| ||||| ||||| || || || | |||| || || || | || ||
Sbjct 3665 GTCAAGAATATCTGCACGGTTGGTAGCTGCAACTACAATAATACCTGTGTTCCCTTCAAA 3606
Query 12794 GCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTC---GCGGG 12850
|||||||||||| ||||| || || || | |||||||| | |||||||||| |
Sbjct 3605 GCCATCCATCTCGGTCAAAAGCTGGTTCAGCGTTTGTTCTCTTTCATCATTCCCACCTCC 3546
Query 12851 CATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACA 12910
|||||| | | || |||| || || || |||||||| |||| || || |||||
Sbjct 3545 AATACCAGTCCCCCT---TTGCCGCCCAACAGCATCAATTTCATCAACAAACACAATACA 3489
Query 12911 CGGTTGATTTTCACGGGCAACTTC--AAAGATATCTCGCACTCTCTTGGCACCGACACCC 12968
|| ||| || ||| |||| |||| ||||| ||||| ||||| |||||
Sbjct 3488 AGGAGCATTCTCCTTGGC--CTTCTTGAAGAGATCTCTAACTCTTGAAGCACCAACACCA 3431
Query 12969 ACAAACATCTCCACAAA 12985
||||||||||| |||||
Sbjct 3430 ACAAACATCTCAACAAA 3414
>seq293582
Length=2029
Score = 89.7 bits (98), Expect = 6e-13
Identities = 179/262 (68%), Gaps = 5/262 (2%)
Strand=Plus/Plus
Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590
||| || || ||||| | ||||| | ||| || ||||| || || ||||| || ||
Sbjct 1311 GTGCAGGCCTTCGTCCCTCGAGATCAATTCGTTGGAGAACGTTAGGCCCGGCATCAGGCC 1370
Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650
|||||||| | |||||| || || || || || ||||||||||| ||||| |||||
Sbjct 1371 GCGCTTCTTGAGCCAGAAGATGGCGCAGAAGCTTCCGGAGAAGAAGATGCCCTCGACACA 1430
Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGC 127710
||||| || | | ||||| || ||||| |||| || | ||| | ||
Sbjct 1431 GGCGAAGGCGACGATCCGCTCCGCGAAGGACTCGGAC---CCGTCGATCCAGCGGAGGGC 1487
Query 127711 CCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTT 127770
|||||| ||||| || ||| || |||| ||||| | || | || || |||||
Sbjct 1488 CCACTGGGCCTTCCGCTGGATGCAGGGGATGGTCTCCACGGCGTGGAACAGCCGGTTCTT 1547
Query 127771 TTCTGATGGA-TCTTTGATGTA 127791
|| | |||| || ||||||||
Sbjct 1548 CTC-GTTGGAGTCCTTGATGTA 1568
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 609949579110960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |