Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27]
463,906 sequences; 661,937,708 total letters
Query= NC_013668.3
Length=248526
Score E
Sequences producing significant alignments: (Bits) Value
seq293582 179 6e-40
>seq293582
Length=2029
Score = 179 bits (198), Expect = 6e-40
Identities = 487/741 (66%), Gaps = 26/741 (4%)
Strand=Plus/Plus
Query 159648 TCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGT 159707
|||||||||| ||||| ||||| |||| || || || ||||| | | || || |
Sbjct 1025 TCTTCTCGAAGAAGTTCGTCTTCCCCTGCAACGAAATCAGCTCCATCCAATCAAACGGAT 1084
Query 159708 TCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATT 159767
||| ||| | || |||| | || | ||| ||| ||||| || ||||| || |
Sbjct 1085 TCTGCACCTTGTACATCTTCCCGTACCCCAACGCCACCAACAACCGATCCGCCACGAACT 1144
Query 159768 CGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCG 159827
|||| || | | |||| | || | ||| ||||||| ||| | | || ||||| ||
Sbjct 1145 CGATATACGTGCTCATCAGATCGCCGTTCATCCCCACCAGACCACACGGCAGCGCGTCGC 1204
Query 159828 ACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCGTACC 159887
||| ||||||| |||| ||||| ||||| || | |||||||| | || || || | |
Sbjct 1205 ACACAAACTCCCTCTCGATCTCCACCGCGTCCGCCACAATCTTCTTAACCCGCTCCTCGC 1264
Query 159888 CCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAG-----GCACGCAAAGTCGCAGTGCAG 159942
| |||| |||| || |||| | || |||||| || |||||||||||
Sbjct 1265 TCAGCTTC------ATGT--TCAACAAACCGTAGATCAAGCACGCGAAATCGCAGTGCAG 1316
Query 159943 TCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGG 160002
|| ||||||| ||||| || |||||||| | | ||||||||||| | || |||
Sbjct 1317 GCCTTCGTCCCTCGAGATCAATTCGTTGGAGAACGTTAGGCCCGGCATCAGGCCGCGCTT 1376
Query 160003 TTTGAGCCAAAAAATGGCCGCAAAAGC-ACCGCTAAAAAAGATCCCCTCCACGGCCGCAA 160061
|||||||| || |||| |||| |||| ||| || ||||| ||||| || || |
Sbjct 1377 CTTGAGCCAGAAGATGG-CGCAGAAGCTTCCGGAGAAGAAGATGCCCTCGACACAGGCGA 1435
Query 160062 ACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCATT 160121
| || |||| || ||| | | ||| | || | | | |||| | |||||| |
Sbjct 1436 AGGCGACGATCCGCTCCGCGA---AGGACTCGGACCCGTCGATCCAGCGGAGGGCCCACT 1492
Query 160122 CAGCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTCCT 160181
|||||| |||||| || ||| ||| ||||||| |||| | || || ||| |
Sbjct 1493 GGGCCTTCCGCTGGATGCAGGGGATGGTCTCCACGGCGTGGAACAGCCGGTTCTTCTCGT 1552
Query 160182 TCACATCCTTGATCAGAGTAGCAATC----AGCTTCGAGTACATTTCTGCGTGCACATTT 160237
| |||||||| |||| | || || |||||| || | ||| | ||
Sbjct 1553 TGGAGTCCTTGAT----GTAGGACTCCAGGAGGAGGCTGTACATCTCCGAGTGGATGTTC 1608
Query 160238 TCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTCCTGTGTG 160297
|||||||| ||||| || |||||| ||||||| ||| ||||||| ||
Sbjct 1609 TCGATGGCGATCTGGAACCCGTAGAAGGCGCGCGCCTCCGCGACCTGGACCTCCTTCATG 1668
Query 160298 AACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACG 160357
|| | | | ||||| | || | ||||| | ||| |||||||| || | |||
Sbjct 1669 AAGCGTCCGGCAAGATTCTCCAGGACGATGCCGTCCGAGGCGGCAAAGAAGGCGAGGACG 1728
Query 160358 TGAGAGATGAAATGTCTCTCG 160378
|| | |||||| || | ||||
Sbjct 1729 TGGGTGATGAAGTGGCGCTCG 1749
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 790544234147360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |