Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq293582 179 6e-40 >seq293582 Length=2029 Score = 179 bits (198), Expect = 6e-40 Identities = 487/741 (66%), Gaps = 26/741 (4%) Strand=Plus/Plus Query 159648 TCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGT 159707 |||||||||| ||||| ||||| |||| || || || ||||| | | || || | Sbjct 1025 TCTTCTCGAAGAAGTTCGTCTTCCCCTGCAACGAAATCAGCTCCATCCAATCAAACGGAT 1084 Query 159708 TCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATT 159767 ||| ||| | || |||| | || | ||| ||| ||||| || ||||| || | Sbjct 1085 TCTGCACCTTGTACATCTTCCCGTACCCCAACGCCACCAACAACCGATCCGCCACGAACT 1144 Query 159768 CGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCG 159827 |||| || | | |||| | || | ||| ||||||| ||| | | || ||||| || Sbjct 1145 CGATATACGTGCTCATCAGATCGCCGTTCATCCCCACCAGACCACACGGCAGCGCGTCGC 1204 Query 159828 ACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCGTACC 159887 ||| ||||||| |||| ||||| ||||| || | |||||||| | || || || | | Sbjct 1205 ACACAAACTCCCTCTCGATCTCCACCGCGTCCGCCACAATCTTCTTAACCCGCTCCTCGC 1264 Query 159888 CCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAG-----GCACGCAAAGTCGCAGTGCAG 159942 | |||| |||| || |||| | || |||||| || ||||||||||| Sbjct 1265 TCAGCTTC------ATGT--TCAACAAACCGTAGATCAAGCACGCGAAATCGCAGTGCAG 1316 Query 159943 TCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGG 160002 || ||||||| ||||| || |||||||| | | ||||||||||| | || ||| Sbjct 1317 GCCTTCGTCCCTCGAGATCAATTCGTTGGAGAACGTTAGGCCCGGCATCAGGCCGCGCTT 1376 Query 160003 TTTGAGCCAAAAAATGGCCGCAAAAGC-ACCGCTAAAAAAGATCCCCTCCACGGCCGCAA 160061 |||||||| || |||| |||| |||| ||| || ||||| ||||| || || | Sbjct 1377 CTTGAGCCAGAAGATGG-CGCAGAAGCTTCCGGAGAAGAAGATGCCCTCGACACAGGCGA 1435 Query 160062 ACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCATT 160121 | || |||| || ||| | | ||| | || | | | |||| | |||||| | Sbjct 1436 AGGCGACGATCCGCTCCGCGA---AGGACTCGGACCCGTCGATCCAGCGGAGGGCCCACT 1492 Query 160122 CAGCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTCCT 160181 |||||| |||||| || ||| ||| ||||||| |||| | || || ||| | Sbjct 1493 GGGCCTTCCGCTGGATGCAGGGGATGGTCTCCACGGCGTGGAACAGCCGGTTCTTCTCGT 1552 Query 160182 TCACATCCTTGATCAGAGTAGCAATC----AGCTTCGAGTACATTTCTGCGTGCACATTT 160237 | |||||||| |||| | || || |||||| || | ||| | || Sbjct 1553 TGGAGTCCTTGAT----GTAGGACTCCAGGAGGAGGCTGTACATCTCCGAGTGGATGTTC 1608 Query 160238 TCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTCCTGTGTG 160297 |||||||| ||||| || |||||| ||||||| ||| ||||||| || Sbjct 1609 TCGATGGCGATCTGGAACCCGTAGAAGGCGCGCGCCTCCGCGACCTGGACCTCCTTCATG 1668 Query 160298 AACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACG 160357 || | | | ||||| | || | ||||| | ||| |||||||| || | ||| Sbjct 1669 AAGCGTCCGGCAAGATTCTCCAGGACGATGCCGTCCGAGGCGGCAAAGAAGGCGAGGACG 1728 Query 160358 TGAGAGATGAAATGTCTCTCG 160378 || | |||||| || | |||| Sbjct 1729 TGGGTGATGAAGTGGCGCTCG 1749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 790544234147360