Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27]
463,906 sequences; 661,937,708 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq284040 149 7e-31
seq259261 145 9e-30
seq25275 132 5e-26
seq62239 122 1e-22
seq156932 118 1e-21
seq118537 96.9 4e-15
seq228143 93.3 5e-14
seq304067 82.4 9e-11
>seq284040
Length=2693
Score = 149 bits (164), Expect = 7e-31
Identities = 169/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426
||||| || || |||| ||||||||||| || |||||| ||||| ||||| ||||
Sbjct 985 CCTCCCCTCAACCGCAGAACCAGATGCAACGTGGACTCCTTCTGGATGTTGTAATCGGCC 926
Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486
| ||| | |||| |||||||||||||||||||| ||||| ||||||||||| | ||
Sbjct 925 AAAGTCCTTCCGTCTTCGAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCCGGTGGG 866
Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546
| | ||||||||| |||||| ||| | | | | ||||||| ||||||
Sbjct 865 ATTCCTTCCTTGTCCTGAATCTTCGCCTTCACGTTATCGATCGTGTCGGAGCTTTCCACC 806
Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|||| |||||| ||||| || |||| ||| || || ||||| |||||
Sbjct 805 TCCAACGTGATCGTTTTTCCGGTCAACGTCTTCACGAAGATCTGCAT 759
>seq259261
Length=7884
Score = 145 bits (160), Expect = 9e-30
Identities = 162/214 (76%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443
|||||| || | || |||||| ||||| |||||||||| ||| || | |||| ||
Sbjct 2585 CACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCTAGGGTCCTGCCGTCCTC 2526
Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503
|||||| || |||||||| || | |||||||||||| | ||| | || |||||||||
Sbjct 2525 GAGCTGTTTCCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCTTCCTTGTCCTG 2466
Query 46504 GATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTT 46562
|||||| ||| | ||| | | | ||||||| ||||| || |||| |||||| || |
Sbjct 2465 GATCTTGGCCTTCA-CGTTGTCGATCGTGTCGGAGGATTCGACCTCCAACGTGATCGTCT 2407
Query 46563 TGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596
| ||||| || ||||| || ||||| ||||||||
Sbjct 2406 TCCCCGTTAGGGTTTTCACGAAGATCTGCATTTT 2373
>seq25275
Length=8276
Score = 132 bits (146), Expect = 5e-26
Identities = 168/230 (73%), Gaps = 6/230 (3%)
Strand=Plus/Minus
Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426
|| ||||||||||| | |||| || | || |||||| || || ||||| ||||
Sbjct 5245 CCGCCTCTTAAACGAAGAACCAAGTGAAGGGTGGACTCCTTCTGTATGTTGTAATCGGCC 5186
Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486
| |||||| |||| ||||||||||||||||| || ||||| | ||||||||| | ||
Sbjct 5185 AAAGTGCGACCGTCCTCGAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGA 5126
Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 46543
| | ||||||||| ||| ||| ||| | | | | ||||| |||| ||
Sbjct 5125 ATACCCTCCTTGTCTTGGATTTTCGCCTTCACGTTATCGATAGTGTCCGAGCTC---TCG 5069
Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| |||| |||||||||||| || || || ||||| ||||||||||||||
Sbjct 5068 ACTTCCAACGTGATGGTTTTCCCTGTTAGGGTTTTGACAAAGATTTGCAT 5019
Score = 122 bits (134), Expect = 1e-22
Identities = 168/231 (73%), Gaps = 8/231 (3%)
Strand=Plus/Minus
Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426
|| ||||||||||| | |||| || | || |||||| ||||| || |||||||
Sbjct 5017 CCGCCTCTTAAACGAAGAACCAAGTGAAGGGTTGACTCCTTCTGGATGTTATAGTCGGCA 4958
Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486
||||| || |||| ||||||||||| ||||| || |||| | ||||||||| | ||
Sbjct 4957 AGAGTACGGCCGTCCTCGAGCTGCTTTCCGGCAAAGATCAGTCTCTGCTGGTCTGGGGGA 4898
Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTC---GCTCGATTC 46542
| | |||||||| || || ||| | ||| | | | ||||| ||| |||
Sbjct 4897 ATACCTTCCTTGTCTTGAATTTTAGCCTTCA-CGTTGTCAATGGTGTCAGAGCT---TTC 4842
Query 46543 CACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| |||| ||||||||||||||| || || ||||| ||||||||||||||
Sbjct 4841 GACCTCCAGCGTGATGGTTTTGCCGGTGAGGGTTTTGACAAAGATTTGCAT 4791
Score = 95.1 bits (104), Expect = 1e-14
Identities = 141/196 (72%), Gaps = 8/196 (4%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| |||||||||||||||| | ||| || |||| ||||||||||||||||| ||
Sbjct 4754 CTCCTTCTGGATATTGTAGTCGGCCAAAGTTCGGCCGTCCTCGAGCTGCTTGCCGGCAAA 4695
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|||| | ||||| || | || | | ||||||||| ||| || ||||| |||
Sbjct 4694 GATCAGCCTTTGCTGATCTGGGGGAATCCCTTCCTTGTCCTGGATTTTGGCCTTGA-CGT 4636
Query 46522 CG-CCACCGTGTCG---CTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTT 46577
| | | || ||| ||| || || || | |||||||| || || || || || |
Sbjct 4635 TGTCGATTGTATCGGAACTC---TCGACCTCTAGGGTGATGGTCTTTCCAGTTAGTGTCT 4579
Query 46578 TAACAAAGATTTGCAT 46593
|||| ||||| |||||
Sbjct 4578 TAACGAAGATCTGCAT 4563
Score = 93.3 bits (102), Expect = 5e-14
Identities = 162/232 (70%), Gaps = 8/232 (3%)
Strand=Plus/Minus
Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426
|| || || || || | |||| ||||| || ||||| |||||||| |||||||
Sbjct 5929 CCACCCCTCAATCGGAGTACCAAATGCAGAGTCGATTCCTTCTGGATATTATAGTCGGCA 5870
Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486
|| || || | || || ||||||||||| || || |||| | ||||||||| | ||
Sbjct 5869 AGCGTACGGCCATCCTCAAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCTGGTGGG 5810
Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCG---CTCGATTC 46542
| | |||||| ||| ||||||| ||| | ||| | | | |||||| ||| ||
Sbjct 5809 ATACCCTCCTTATCCTGGATCTTC-GCTTTAACGTTGTCAATGGTGTCGGAACTC---TC 5754
Query 46543 CACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594
|| |||| ||||| || || || || | || || |||||||| ||||||
Sbjct 5753 GACTTCCAATGTGATAGTCTTCCCGGTTAAGGTCTTCACAAAGATCTGCATT 5702
Score = 91.5 bits (100), Expect = 2e-13
Identities = 148/212 (70%), Gaps = 6/212 (3%)
Strand=Plus/Minus
Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444
|||| ||| | ||| |||||| ||||| || || || | ||||| | | || ||
Sbjct 6139 ACCAAATGAAGGGTAGACTCCTTCTGGATGTTATAATCCGCAAGAGTCCTTCCATCCTCA 6080
Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504
|||||||| || || || |||| | |||||| || | || | | ||||||||||
Sbjct 6079 AGCTGCTTCCCAGCAAAAATCAGCCTCTGCTGATCCGGTGGGATCCCCTCCTTGTCCTGA 6020
Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCG---CTCGATTCCACATCCACCGTGATGGTT 46561
|||||| || | | | | |||||| ||| ||||| |||| |||||||||
Sbjct 6019 ATCTTCGCTTTCACATTGTCGATCGTGTCCGAACTC---TCCACCTCCAGCGTGATGGTC 5963
Query 46562 TTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| || |||| ||| ||||||||||| |||||
Sbjct 5962 TTCCCTGTCAACGTCTTAACAAAGATCTGCAT 5931
>seq62239
Length=9780
Score = 122 bits (134), Expect = 1e-22
Identities = 144/195 (74%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| |||||||||| ||| || | |||| ||||||||||| ||||||||
Sbjct 5366 CTCCTTCTGGATGTTGTAGTCGGCTAGGGTCCTGCCGTCCTCGAGCTGCTTCCCGGCGAA 5425
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|| | ||| |||||||| | ||| | || |||||||| |||||| ||||| |
Sbjct 5426 GATGAGGCGTTGCTGGTCCGGCGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATT 5485
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | |||||| ||||| || || | || |||||||| || || || ||||| ||
Sbjct 5486 GTCGATGGTGTCGGAGGATTCGACCTCTAGGGTTATGGTTTTCCCGGTTAGGGTTTTCAC 5545
Query 46582 AAAGATTTGCATTTT 46596
||||| ||||| ||
Sbjct 5546 GAAGATCTGCATCTT 5560
>seq156932
Length=6713
Score = 118 bits (130), Expect = 1e-21
Identities = 146/196 (74%), Gaps = 8/196 (4%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| |||||||| | ||||| || |||| ||||| || || ||||||||
Sbjct 4020 CTCCTTCTGGATGTTGTAGTCCGCAAGAGTACGGCCGTCCTCGAGTTGTTTACCGGCGAA 4079
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
||||| ||||||||||| | || | || |||||||| |||||| ||||| |||
Sbjct 4080 GATCAATCGCTGCTGGTCTGGGGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTGA-CGT 4138
Query 46522 CG-CCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTT 46577
| | | ||||| ||| ||| || || | |||||||||||||| |||| || |
Sbjct 4139 TGTCGATGGTGTCAGAGCT---TTCTACTTCAAGAGTGATGGTTTTGCCGGTCAAGGTCT 4195
Query 46578 TAACAAAGATTTGCAT 46593
| || |||||||||||
Sbjct 4196 TGACGAAGATTTGCAT 4211
Score = 100 bits (110), Expect = 3e-16
Identities = 142/196 (72%), Gaps = 8/196 (4%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||||||||| |||||||||| |||||| || |||| |||||||| || ||||| ||
Sbjct 4248 CTCCTTTTGGATGTTGTAGTCGGCTAGAGTTCGGCCGTCCTCGAGCTGTTTACCGGCAAA 4307
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|||| | |||||| || | || | | |||||||| |||||| ||||| |||
Sbjct 4308 GATCAGCCTCTGCTGATCTGGAGGAATCCCTTCCTTGTCTTGGATCTTGGCCTTGA-CGT 4366
Query 46522 CG-CCACCGTGTCG---CTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTT 46577
| | | || ||| ||| || || || | |||||||| ||||| || || || |
Sbjct 4367 TGTCAATTGTATCGGAACTC---TCGACCTCGAGAGTGATGGTCTTGCCAGTGAGGGTCT 4423
Query 46578 TAACAAAGATTTGCAT 46593
|||| || || |||||
Sbjct 4424 TAACGAATATCTGCAT 4439
>seq118537
Length=769
Score = 96.9 bits (106), Expect = 4e-15
Identities = 142/197 (72%), Gaps = 3/197 (2%)
Strand=Plus/Plus
Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462
||||| |||||||||||||||| ||| || | |||| |||||||| || |||| ||
Sbjct 280 TCCTTCTGGATATTGTAGTCGGCTAGGGTTCTGCCGTCCTCGAGCTGTTTTTCGGCAAAG 339
Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522
| | ||| |||||||| | ||| | || |||||||| |||||| ||| |||
Sbjct 340 TTGAGGCGTTGCTGGTCCGGCGGGAAGCCTTCCTTGTCTTGGATCTT-GGCTTTCACGTT 398
Query 46523 G-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCG-TTTTAA 46580
| | || |||||| || || || |||| ||||||||| ||||| | || | |||| |
Sbjct 399 GTCGACGGTGTCGGAGGACTCGACCTCCAACGTGATGGTCTTGCCGATTAGGGTTTTTCA 458
Query 46581 CAAAGATTTGCATTTTG 46597
||||| | ||| |||
Sbjct 459 AGAAGATCTACATCTTG 475
>seq228143
Length=6931
Score = 93.3 bits (102), Expect = 5e-14
Identities = 140/195 (72%), Gaps = 8/195 (4%)
Strand=Plus/Minus
Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462
||||| ||||| |||||||||| || ||| || | || ||||||||||| ||||| ||
Sbjct 2375 TCCTTCTGGATGTTGTAGTCGGCTAAAGTACGGCCATCTTCGAGCTGCTTTCCGGCAAAG 2316
Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522
|| | | |||||||| | || | || |||||||| |||||| ||||| |||
Sbjct 2315 ATGAGCCTTTGCTGGTCTGGGGGAATGCCTTCCTTGTCTTGGATCTTGGCCTTGA-CGTT 2257
Query 46523 G-CCACCGTGTCG---CTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578
| | | |||||| ||| || || || | ||||| || || || || || || ||
Sbjct 2256 GTCGATTGTGTCGGAACTC---TCAACCTCGAGAGTGATTGTCTTTCCAGTGAGGGTCTT 2200
Query 46579 AACAAAGATTTGCAT 46593
||||||||| |||||
Sbjct 2199 AACAAAGATCTGCAT 2185
Score = 89.7 bits (98), Expect = 6e-13
Identities = 137/194 (71%), Gaps = 6/194 (3%)
Strand=Plus/Minus
Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462
||||| ||||| |||||||| | || || || |||| |||||||| || ||||| ||
Sbjct 2603 TCCTTCTGGATGTTGTAGTCTGCGAGGGTTCGGCCGTCCTCGAGCTGTTTACCGGCAAAG 2544
Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522
|| | | ||||||||| | || | || |||||||| |||||| ||||| |
Sbjct 2543 ATGAGTCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTA 2484
Query 46523 GCCACCGTGTCG---CTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTA 46579
| | |||||| ||| || || |||| ||||||||||| || || || || ||
Sbjct 2483 TCGATGGTGTCGGAGCTC---TCGACCTCCAAAGTGATGGTTTTCCCAGTGAGGGTCTTG 2427
Query 46580 ACAAAGATTTGCAT 46593
|| ||||| |||||
Sbjct 2426 ACGAAGATCTGCAT 2413
>seq304067
Length=4417
Score = 82.4 bits (90), Expect = 9e-11
Identities = 65/78 (83%), Gaps = 0/78 (0%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| |||||||||| ||| || | |||| ||||||||||| ||||||||
Sbjct 80 CTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCTGCCGTCCTCGAGCTGCTTCCCGGCGAA 21
Query 46462 TATCAAGCGCTGCTGGTC 46479
|| | ||||||||||||
Sbjct 20 GATGAGGCGCTGCTGGTC 3
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 561960681435120
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