Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq284040 149 7e-31 seq259261 145 9e-30 seq25275 132 5e-26 seq62239 122 1e-22 seq156932 118 1e-21 seq118537 96.9 4e-15 seq228143 93.3 5e-14 seq304067 82.4 9e-11 >seq284040 Length=2693 Score = 149 bits (164), Expect = 7e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| || || |||| ||||||||||| || |||||| ||||| ||||| |||| Sbjct 985 CCTCCCCTCAACCGCAGAACCAGATGCAACGTGGACTCCTTCTGGATGTTGTAATCGGCC 926 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | ||| | |||| |||||||||||||||||||| ||||| ||||||||||| | || Sbjct 925 AAAGTCCTTCCGTCTTCGAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCCGGTGGG 866 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | ||||||||| |||||| ||| | | | | ||||||| |||||| Sbjct 865 ATTCCTTCCTTGTCCTGAATCTTCGCCTTCACGTTATCGATCGTGTCGGAGCTTTCCACC 806 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| |||||| ||||| || |||| ||| || || ||||| ||||| Sbjct 805 TCCAACGTGATCGTTTTTCCGGTCAACGTCTTCACGAAGATCTGCAT 759 >seq259261 Length=7884 Score = 145 bits (160), Expect = 9e-30 Identities = 162/214 (76%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 |||||| || | || |||||| ||||| |||||||||| ||| || | |||| || Sbjct 2585 CACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCTAGGGTCCTGCCGTCCTC 2526 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 |||||| || |||||||| || | |||||||||||| | ||| | || ||||||||| Sbjct 2525 GAGCTGTTTCCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCTTCCTTGTCCTG 2466 Query 46504 GATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTT 46562 |||||| ||| | ||| | | | ||||||| ||||| || |||| |||||| || | Sbjct 2465 GATCTTGGCCTTCA-CGTTGTCGATCGTGTCGGAGGATTCGACCTCCAACGTGATCGTCT 2407 Query 46563 TGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 | ||||| || ||||| || ||||| |||||||| Sbjct 2406 TCCCCGTTAGGGTTTTCACGAAGATCTGCATTTT 2373 >seq25275 Length=8276 Score = 132 bits (146), Expect = 5e-26 Identities = 168/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||||||||| | |||| || | || |||||| || || ||||| |||| Sbjct 5245 CCGCCTCTTAAACGAAGAACCAAGTGAAGGGTGGACTCCTTCTGTATGTTGTAATCGGCC 5186 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | |||||| |||| ||||||||||||||||| || ||||| | ||||||||| | || Sbjct 5185 AAAGTGCGACCGTCCTCGAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGA 5126 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 46543 | | ||||||||| ||| ||| ||| | | | | ||||| |||| || Sbjct 5125 ATACCCTCCTTGTCTTGGATTTTCGCCTTCACGTTATCGATAGTGTCCGAGCTC---TCG 5069 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || |||| |||||||||||| || || || ||||| |||||||||||||| Sbjct 5068 ACTTCCAACGTGATGGTTTTCCCTGTTAGGGTTTTGACAAAGATTTGCAT 5019 Score = 122 bits (134), Expect = 1e-22 Identities = 168/231 (73%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||||||||| | |||| || | || |||||| ||||| || ||||||| Sbjct 5017 CCGCCTCTTAAACGAAGAACCAAGTGAAGGGTTGACTCCTTCTGGATGTTATAGTCGGCA 4958 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 ||||| || |||| ||||||||||| ||||| || |||| | ||||||||| | || Sbjct 4957 AGAGTACGGCCGTCCTCGAGCTGCTTTCCGGCAAAGATCAGTCTCTGCTGGTCTGGGGGA 4898 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTC---GCTCGATTC 46542 | | |||||||| || || ||| | ||| | | | ||||| ||| ||| Sbjct 4897 ATACCTTCCTTGTCTTGAATTTTAGCCTTCA-CGTTGTCAATGGTGTCAGAGCT---TTC 4842 Query 46543 CACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || |||| ||||||||||||||| || || ||||| |||||||||||||| Sbjct 4841 GACCTCCAGCGTGATGGTTTTGCCGGTGAGGGTTTTGACAAAGATTTGCAT 4791 Score = 95.1 bits (104), Expect = 1e-14 Identities = 141/196 (72%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| |||||||||||||||| | ||| || |||| ||||||||||||||||| || Sbjct 4754 CTCCTTCTGGATATTGTAGTCGGCCAAAGTTCGGCCGTCCTCGAGCTGCTTGCCGGCAAA 4695 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| | ||||| || | || | | ||||||||| ||| || ||||| ||| Sbjct 4694 GATCAGCCTTTGCTGATCTGGGGGAATCCCTTCCTTGTCCTGGATTTTGGCCTTGA-CGT 4636 Query 46522 CG-CCACCGTGTCG---CTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTT 46577 | | | || ||| ||| || || || | |||||||| || || || || || | Sbjct 4635 TGTCGATTGTATCGGAACTC---TCGACCTCTAGGGTGATGGTCTTTCCAGTTAGTGTCT 4579 Query 46578 TAACAAAGATTTGCAT 46593 |||| ||||| ||||| Sbjct 4578 TAACGAAGATCTGCAT 4563 Score = 93.3 bits (102), Expect = 5e-14 Identities = 162/232 (70%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || || || || || | |||| ||||| || ||||| |||||||| ||||||| Sbjct 5929 CCACCCCTCAATCGGAGTACCAAATGCAGAGTCGATTCCTTCTGGATATTATAGTCGGCA 5870 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || || || | || || ||||||||||| || || |||| | ||||||||| | || Sbjct 5869 AGCGTACGGCCATCCTCAAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCTGGTGGG 5810 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCG---CTCGATTC 46542 | | |||||| ||| ||||||| ||| | ||| | | | |||||| ||| || Sbjct 5809 ATACCCTCCTTATCCTGGATCTTC-GCTTTAACGTTGTCAATGGTGTCGGAACTC---TC 5754 Query 46543 CACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 || |||| ||||| || || || || | || || |||||||| |||||| Sbjct 5753 GACTTCCAATGTGATAGTCTTCCCGGTTAAGGTCTTCACAAAGATCTGCATT 5702 Score = 91.5 bits (100), Expect = 2e-13 Identities = 148/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 |||| ||| | ||| |||||| ||||| || || || | ||||| | | || || Sbjct 6139 ACCAAATGAAGGGTAGACTCCTTCTGGATGTTATAATCCGCAAGAGTCCTTCCATCCTCA 6080 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 |||||||| || || || |||| | |||||| || | || | | |||||||||| Sbjct 6079 AGCTGCTTCCCAGCAAAAATCAGCCTCTGCTGATCCGGTGGGATCCCCTCCTTGTCCTGA 6020 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCG---CTCGATTCCACATCCACCGTGATGGTT 46561 |||||| || | | | | |||||| ||| ||||| |||| ||||||||| Sbjct 6019 ATCTTCGCTTTCACATTGTCGATCGTGTCCGAACTC---TCCACCTCCAGCGTGATGGTC 5963 Query 46562 TTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || |||| ||| ||||||||||| ||||| Sbjct 5962 TTCCCTGTCAACGTCTTAACAAAGATCTGCAT 5931 >seq62239 Length=9780 Score = 122 bits (134), Expect = 1e-22 Identities = 144/195 (74%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||||| ||| || | |||| ||||||||||| |||||||| Sbjct 5366 CTCCTTCTGGATGTTGTAGTCGGCTAGGGTCCTGCCGTCCTCGAGCTGCTTCCCGGCGAA 5425 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||| |||||||| | ||| | || |||||||| |||||| ||||| | Sbjct 5426 GATGAGGCGTTGCTGGTCCGGCGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATT 5485 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | |||||| ||||| || || | || |||||||| || || || ||||| || Sbjct 5486 GTCGATGGTGTCGGAGGATTCGACCTCTAGGGTTATGGTTTTCCCGGTTAGGGTTTTCAC 5545 Query 46582 AAAGATTTGCATTTT 46596 ||||| ||||| || Sbjct 5546 GAAGATCTGCATCTT 5560 >seq156932 Length=6713 Score = 118 bits (130), Expect = 1e-21 Identities = 146/196 (74%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| | ||||| || |||| ||||| || || |||||||| Sbjct 4020 CTCCTTCTGGATGTTGTAGTCCGCAAGAGTACGGCCGTCCTCGAGTTGTTTACCGGCGAA 4079 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| ||||||||||| | || | || |||||||| |||||| ||||| ||| Sbjct 4080 GATCAATCGCTGCTGGTCTGGGGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTGA-CGT 4138 Query 46522 CG-CCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTT 46577 | | | ||||| ||| ||| || || | |||||||||||||| |||| || | Sbjct 4139 TGTCGATGGTGTCAGAGCT---TTCTACTTCAAGAGTGATGGTTTTGCCGGTCAAGGTCT 4195 Query 46578 TAACAAAGATTTGCAT 46593 | || ||||||||||| Sbjct 4196 TGACGAAGATTTGCAT 4211 Score = 100 bits (110), Expect = 3e-16 Identities = 142/196 (72%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||||||||| |||||||||| |||||| || |||| |||||||| || ||||| || Sbjct 4248 CTCCTTTTGGATGTTGTAGTCGGCTAGAGTTCGGCCGTCCTCGAGCTGTTTACCGGCAAA 4307 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| | |||||| || | || | | |||||||| |||||| ||||| ||| Sbjct 4308 GATCAGCCTCTGCTGATCTGGAGGAATCCCTTCCTTGTCTTGGATCTTGGCCTTGA-CGT 4366 Query 46522 CG-CCACCGTGTCG---CTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTT 46577 | | | || ||| ||| || || || | |||||||| ||||| || || || | Sbjct 4367 TGTCAATTGTATCGGAACTC---TCGACCTCGAGAGTGATGGTCTTGCCAGTGAGGGTCT 4423 Query 46578 TAACAAAGATTTGCAT 46593 |||| || || ||||| Sbjct 4424 TAACGAATATCTGCAT 4439 >seq118537 Length=769 Score = 96.9 bits (106), Expect = 4e-15 Identities = 142/197 (72%), Gaps = 3/197 (2%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| |||||||||||||||| ||| || | |||| |||||||| || |||| || Sbjct 280 TCCTTCTGGATATTGTAGTCGGCTAGGGTTCTGCCGTCCTCGAGCTGTTTTTCGGCAAAG 339 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 | | ||| |||||||| | ||| | || |||||||| |||||| ||| ||| Sbjct 340 TTGAGGCGTTGCTGGTCCGGCGGGAAGCCTTCCTTGTCTTGGATCTT-GGCTTTCACGTT 398 Query 46523 G-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCG-TTTTAA 46580 | | || |||||| || || || |||| ||||||||| ||||| | || | |||| | Sbjct 399 GTCGACGGTGTCGGAGGACTCGACCTCCAACGTGATGGTCTTGCCGATTAGGGTTTTTCA 458 Query 46581 CAAAGATTTGCATTTTG 46597 ||||| | ||| ||| Sbjct 459 AGAAGATCTACATCTTG 475 >seq228143 Length=6931 Score = 93.3 bits (102), Expect = 5e-14 Identities = 140/195 (72%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| |||||||||| || ||| || | || ||||||||||| ||||| || Sbjct 2375 TCCTTCTGGATGTTGTAGTCGGCTAAAGTACGGCCATCTTCGAGCTGCTTTCCGGCAAAG 2316 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | | |||||||| | || | || |||||||| |||||| ||||| ||| Sbjct 2315 ATGAGCCTTTGCTGGTCTGGGGGAATGCCTTCCTTGTCTTGGATCTTGGCCTTGA-CGTT 2257 Query 46523 G-CCACCGTGTCG---CTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | | |||||| ||| || || || | ||||| || || || || || || || Sbjct 2256 GTCGATTGTGTCGGAACTC---TCAACCTCGAGAGTGATTGTCTTTCCAGTGAGGGTCTT 2200 Query 46579 AACAAAGATTTGCAT 46593 ||||||||| ||||| Sbjct 2199 AACAAAGATCTGCAT 2185 Score = 89.7 bits (98), Expect = 6e-13 Identities = 137/194 (71%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| |||||||| | || || || |||| |||||||| || ||||| || Sbjct 2603 TCCTTCTGGATGTTGTAGTCTGCGAGGGTTCGGCCGTCCTCGAGCTGTTTACCGGCAAAG 2544 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | | ||||||||| | || | || |||||||| |||||| ||||| | Sbjct 2543 ATGAGTCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTA 2484 Query 46523 GCCACCGTGTCG---CTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTA 46579 | | |||||| ||| || || |||| ||||||||||| || || || || || Sbjct 2483 TCGATGGTGTCGGAGCTC---TCGACCTCCAAAGTGATGGTTTTCCCAGTGAGGGTCTTG 2427 Query 46580 ACAAAGATTTGCAT 46593 || ||||| ||||| Sbjct 2426 ACGAAGATCTGCAT 2413 >seq304067 Length=4417 Score = 82.4 bits (90), Expect = 9e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||||| ||| || | |||| ||||||||||| |||||||| Sbjct 80 CTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCTGCCGTCCTCGAGCTGCTTCCCGGCGAA 21 Query 46462 TATCAAGCGCTGCTGGTC 46479 || | |||||||||||| Sbjct 20 GATGAGGCGCTGCTGGTC 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561960681435120