Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27]
463,906 sequences; 661,937,708 total letters
Query= NC_013797.1
Length=108592
Score E
Sequences producing significant alignments: (Bits) Value
seq25275 93.3 3e-14
>seq25275
Length=8276
Score = 93.3 bits (102), Expect = 3e-14
Identities = 159/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552
||||||| ||||| || ||||| || | ||| || || ||||| || |||||||||
Sbjct 5245 CCGCCTCTTAAACGAAGAACCAAGTGAAGGGTGGACTCCTTCTGTATGTTGTAATCGGCC 5186
Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612
||| ||| | || || | || || ||| |||| || || | |||||| || | |||
Sbjct 5185 AAAGTGCGACCGTCCTCGAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGA 5126
Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAA--TCGTCGCTACTGTGTCTGCGCTTTCCA 39670
| || || ||||| ||||| || | | ||| || ||||| | ||| || |
Sbjct 5125 ATACCCTCCTTGTCTTGGATTTTCGCCTTCACGTTATCGATA--GTGTCCGAGCTCTCGA 5068
Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
| ||||| || || ||||| || |||| ||||| || ||||| |||||
Sbjct 5067 CTTCCAACGTGATGGTTTTCCCTGTTAGGGTTTTGACAAAGATTTGCAT 5019
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 345405622867298
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |