Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq275305 132 6e-26 seq293582 109 7e-19 seq294625 91.5 2e-13 >seq275305 Length=4240 Score = 132 bits (146), Expect = 6e-26 Identities = 290/422 (69%), Gaps = 12/422 (3%) Strand=Plus/Minus Query 15918 TCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACCTGT-TTCGTTATCAAA 15976 ||||| ||||| | || || || || || | |||| ||||||||| ||| | ||||| Sbjct 3664 TCAAGAATATCTGCACGGTTGGTAGCTGCAACTACAATAATACCTGTGTTCCCT-TCAAA 3606 Query 15977 ACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 16036 ||||||||||| |||||||||||||| | |||||||| | |||||||||| | Sbjct 3605 GCCATCCATCTCGGTCAAAAGCTGGTTCAGCGTTTGTTCTCTTTCATCATTCCCACCTCC 3546 Query 16037 ACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGG 16096 | ||||| | | |||| || || |||||||| ||||||| || || || || || Sbjct 3545 AATACCAGTCCCCCTTTGCCGCCCAACAGCATCAATTTCATCAACAAACACAATACAAGG 3486 Query 16097 TTGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTG--GCGCCCACACCAA 16152 ||| || | | | |||| |||||||| | || || |||| || || ||||||| Sbjct 3485 AGCATTCTC-CTTG-GCCTTCTTGAAGAGATCTC-TA-ACTCTTGAAGCACCAACACCAA 3430 Query 16153 CAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCC 16211 |||||||||| ||||| | | | ||| || | || || || ||| | |||||| Sbjct 3429 CAAACATCTCAACAAACTCCGAACCCGAA-ATAGAGAAAAACGGAACACCTGCTTCACCA 3371 Query 16212 GCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCT 16271 |||||||| || || || || || || || || || |||| | || || |||| Sbjct 3370 GCAATGGCCTTTGCTAGCAGTGTTTTTCCAGTTCCCGGAGGACCCACAAGAAGAACACCC 3311 Query 16272 CGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATC 16331 |||||| || ||| || | | ||||| || | ||| ||||| || |||| | Sbjct 3310 TTCGGAATCCGAGCACCAACAGCAGTGAACCTCTCTGGCTTCTTTAGAAACTCGACAACC 3251 Query 16332 TC 16333 || Sbjct 3250 TC 3249 >seq293582 Length=2029 Score = 109 bits (120), Expect = 7e-19 Identities = 114/150 (76%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 102171 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 102230 ||||| || ||||| || |||| || || ||||| ||||| ||||||||||| || | Sbjct 1460 TCCTTCGCGGAGCGGATCGTCGCCTTCGCCTGTGTCGAGGGCATCTTCTTCTCCGGAAGC 1401 Query 102231 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 102290 |||||||| || | |||||||||||||| || || ||||| || || ||||||||| Sbjct 1400 TTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTGATGCCGGGCCTAACGTTCTCCAAC 1341 Query 102291 GAGCTTATCTCTCGTGACGAGGGACTCCAC 102320 || | ||||| | ||||| || || ||| Sbjct 1340 GAATTGATCTCGAGGGACGAAGGCCTGCAC 1311 >seq294625 Length=4757 Score = 91.5 bits (100), Expect = 2e-13 Identities = 146/209 (70%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 102112 TTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTT 102171 |||| || | || ||||| || ||||||| |||| |||| | ||| ||| | Sbjct 4300 TTCCTTGCGTCCAGAAGAAGGCCAATTGGGCGATGAGGTGGATCGATGGC---TCGGAGT 4244 Query 102172 CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCT 102231 | ||||| || || || | || || || || || || || || |||||||| || || Sbjct 4243 CGTTTGCGGAACGTATCATTGCCTTCGCTTGCGTCGAAGGGATATTCTTCTCGGGAAGCT 4184 Query 102232 TCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACG 102291 |||||||||| | ||| | ||||| || ||| | ||||| || | ||||||||||| Sbjct 4183 TCTGCGCTATCTTCTGGTTGAAGAAACGCGGTTTGATGCCTGGATTGACCTTCTCCAACG 4124 Query 102292 AGCTTATCTCTCGTGACGAGGGACTCCAC 102320 || | || || || ||||| ||| | ||| Sbjct 4123 AGTTGATTTCACGAGACGAAGGATTACAC 4095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 617142823452320