Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27]
463,906 sequences; 661,937,708 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq275305 132 6e-26
seq293582 109 7e-19
seq294625 91.5 2e-13
>seq275305
Length=4240
Score = 132 bits (146), Expect = 6e-26
Identities = 290/422 (69%), Gaps = 12/422 (3%)
Strand=Plus/Minus
Query 15918 TCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACCTGT-TTCGTTATCAAA 15976
||||| ||||| | || || || || || | |||| ||||||||| ||| | |||||
Sbjct 3664 TCAAGAATATCTGCACGGTTGGTAGCTGCAACTACAATAATACCTGTGTTCCCT-TCAAA 3606
Query 15977 ACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 16036
||||||||||| |||||||||||||| | |||||||| | |||||||||| |
Sbjct 3605 GCCATCCATCTCGGTCAAAAGCTGGTTCAGCGTTTGTTCTCTTTCATCATTCCCACCTCC 3546
Query 16037 ACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGG 16096
| ||||| | | |||| || || |||||||| ||||||| || || || || ||
Sbjct 3545 AATACCAGTCCCCCTTTGCCGCCCAACAGCATCAATTTCATCAACAAACACAATACAAGG 3486
Query 16097 TTGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTG--GCGCCCACACCAA 16152
||| || | | | |||| |||||||| | || || |||| || || |||||||
Sbjct 3485 AGCATTCTC-CTTG-GCCTTCTTGAAGAGATCTC-TA-ACTCTTGAAGCACCAACACCAA 3430
Query 16153 CAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCC 16211
|||||||||| ||||| | | | ||| || | || || || ||| | ||||||
Sbjct 3429 CAAACATCTCAACAAACTCCGAACCCGAA-ATAGAGAAAAACGGAACACCTGCTTCACCA 3371
Query 16212 GCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCT 16271
|||||||| || || || || || || || || || |||| | || || ||||
Sbjct 3370 GCAATGGCCTTTGCTAGCAGTGTTTTTCCAGTTCCCGGAGGACCCACAAGAAGAACACCC 3311
Query 16272 CGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATC 16331
|||||| || ||| || | | ||||| || | ||| ||||| || |||| |
Sbjct 3310 TTCGGAATCCGAGCACCAACAGCAGTGAACCTCTCTGGCTTCTTTAGAAACTCGACAACC 3251
Query 16332 TC 16333
||
Sbjct 3250 TC 3249
>seq293582
Length=2029
Score = 109 bits (120), Expect = 7e-19
Identities = 114/150 (76%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 102171 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 102230
||||| || ||||| || |||| || || ||||| ||||| ||||||||||| || |
Sbjct 1460 TCCTTCGCGGAGCGGATCGTCGCCTTCGCCTGTGTCGAGGGCATCTTCTTCTCCGGAAGC 1401
Query 102231 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 102290
|||||||| || | |||||||||||||| || || ||||| || || |||||||||
Sbjct 1400 TTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTGATGCCGGGCCTAACGTTCTCCAAC 1341
Query 102291 GAGCTTATCTCTCGTGACGAGGGACTCCAC 102320
|| | ||||| | ||||| || || |||
Sbjct 1340 GAATTGATCTCGAGGGACGAAGGCCTGCAC 1311
>seq294625
Length=4757
Score = 91.5 bits (100), Expect = 2e-13
Identities = 146/209 (70%), Gaps = 3/209 (1%)
Strand=Plus/Minus
Query 102112 TTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTT 102171
|||| || | || ||||| || ||||||| |||| |||| | ||| ||| |
Sbjct 4300 TTCCTTGCGTCCAGAAGAAGGCCAATTGGGCGATGAGGTGGATCGATGGC---TCGGAGT 4244
Query 102172 CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCT 102231
| ||||| || || || | || || || || || || || || |||||||| || ||
Sbjct 4243 CGTTTGCGGAACGTATCATTGCCTTCGCTTGCGTCGAAGGGATATTCTTCTCGGGAAGCT 4184
Query 102232 TCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACG 102291
|||||||||| | ||| | ||||| || ||| | ||||| || | |||||||||||
Sbjct 4183 TCTGCGCTATCTTCTGGTTGAAGAAACGCGGTTTGATGCCTGGATTGACCTTCTCCAACG 4124
Query 102292 AGCTTATCTCTCGTGACGAGGGACTCCAC 102320
|| | || || || ||||| ||| | |||
Sbjct 4123 AGTTGATTTCACGAGACGAAGGATTACAC 4095
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 617142823452320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |