Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq293582 123 3e-23 >seq293582 Length=2029 Score = 123 bits (136), Expect = 3e-23 Identities = 173/240 (72%), Gaps = 2/240 (1%) Strand=Plus/Plus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || ||||| |||| ||||| | || || ||| || || ||||| || || Sbjct 1312 TGCAGGCCTTCGTCCCTCGAGATCAATTCGTTGGAGAACGTTAGGCCCGGCATCAGGCCG 1371 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||||| ||||| |||||||| || || ||||| || |||||||||||||| |||||| Sbjct 1372 CGCTTCTTGAGCCAGAAGATGGCGCAGAAGCTTCCGGAGAAGAAGATGCCCTCGACACAG 1431 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAAAG-GTCGAGACTTGTCGAACCACTTGAGAGCCCA 119686 ||||| |||| | ||||| || || | ||| ||| ||||| ||| ||| ||||| Sbjct 1432 GCGAAGGCGACGATCCGCTCCGCGAAGGACTCG-GACCCGTCGATCCAGCGGAGGGCCCA 1490 Query 119687 GTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAAAAGTTGCTTCTTTTC 119746 | |||||| |||| |||||||||| || | | ||| | ||| || | ||||| || Sbjct 1491 CTGGGCCTTCCGCTGGATGCAGGGGATGGTCTCCACGGCGTGGAACAGCCGGTTCTTCTC 1550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 585560631246800