Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq275305 154 2e-32 seq293582 91.5 2e-13 seq180108 84.2 3e-11 >seq275305 Length=4240 Score = 154 bits (170), Expect = 2e-32 Identities = 288/418 (69%), Gaps = 4/418 (1%) Strand=Plus/Minus Query 9225 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGT-TTCATTATCAAA 9283 ||||| ||||| | || || || || || | |||| ||||||||| ||| | ||||| Sbjct 3664 TCAAGAATATCTGCACGGTTGGTAGCTGCAACTACAATAATACCTGTGTTCCCT-TCAAA 3606 Query 9284 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 9343 ||||||||||| |||||||| ||||| | |||||||| | |||||||||| | Sbjct 3605 GCCATCCATCTCGGTCAAAAGCTGGTTCAGCGTTTGTTCTCTTTCATCATTCCCACCTCC 3546 Query 9344 ACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACATGG 9403 | ||||| | | |||| || || |||||||| ||||||| || |||||||| || Sbjct 3545 AATACCAGTCCCCCTTTGCCGCCCAACAGCATCAATTTCATCAACAAACACAATACAAGG 3486 Query 9404 TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAA 9463 ||| || ||| | | |||||||| | ||| ||| || || ||||||||||| Sbjct 3485 AGCATTCTCCTTGGCCTTCTTGAAGAGATCTCTAACTCTTGAAGCACCAACACCAACAAA 3426 Query 9464 CATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAA 9522 |||||| ||||| | | | ||| || | || || || ||| | |||||| |||| Sbjct 3425 CATCTCAACAAACTCCGAACCCGAA-ATAGAGAAAAACGGAACACCTGCTTCACCAGCAA 3367 Query 9523 TGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTG 9582 |||| || || || || || || || || || |||| | || || ||||| | Sbjct 3366 TGGCCTTTGCTAGCAGTGTTTTTCCAGTTCCCGGAGGACCCACAAGAAGAACACCCTTCG 3307 Query 9583 GAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAATCTC 9640 ||||| || ||| || | | ||||| || | ||| ||||| || |||| ||| Sbjct 3306 GAATCCGAGCACCAACAGCAGTGAACCTCTCTGGCTTCTTTAGAAACTCGACAACCTC 3249 >seq293582 Length=2029 Score = 91.5 bits (100), Expect = 2e-13 Identities = 110/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 ||| || || || || | || || | ||| || ||||| |||||| ||||| || || Sbjct 1311 GTGCAGGCCTTCGTCCCTCGAGATCAATTCGTTGGAGAACGTTAGGCCCGGCATCAGGCC 1370 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 |||||||| | ||| | || |||||||| |||||||||||||| ||||| ||||| Sbjct 1371 GCGCTTCTTGAGCCAGAAGATGGCGCAGAAGCTTCCGGAGAAGAAGATGCCCTCGACACA 1430 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAGGA 117434 || || || | | ||||| |||||||| Sbjct 1431 GGCGAAGGCGACGATCCGCTCCGCGAAGGA 1460 >seq180108 Length=14591 Score = 84.2 bits (92), Expect = 3e-11 Identities = 161/230 (70%), Gaps = 8/230 (3%) Strand=Plus/Plus Query 107168 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TG 107226 || || |||||||| ||||||||||||||||| || | || ||| ||||| |||| || Sbjct 8705 TGGGGCCTTGGTGTTCCAGCATTGAAGAGGGTGGGAGAAGCATGAGTGAAC-CACCTCTG 8763 Query 107227 GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGC 107286 |||||| || || ||| | ||||||||||| | ||| || || || | || Sbjct 8764 TGACATCAAGTGATAAGTCCTGATAACAGAATCAATATTATCCTTATGAATCCCAACTGC 8823 Query 107287 CACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGA--AGA 107344 || | ||| | ||| | ||| || |||| | | | || | || | || | ||| Sbjct 8824 AACCCTCATCAGCATATGTTGAGGCCTTTCAACAACTTTCCCTTGGATC--TTCAATAGA 8881 Query 107345 T-AGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCC 107393 | || || ||||||||||||| | |||||| ||| || | ||| |||||| Sbjct 8882 TAAGATC-TCTCAAGGGTTTTAAAACCAAAATAATCATAGTCAAAGTCCC 8930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 586559604587440