Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27]
463,906 sequences; 661,937,708 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq275305 154 2e-32
seq293582 91.5 2e-13
seq180108 84.2 3e-11
>seq275305
Length=4240
Score = 154 bits (170), Expect = 2e-32
Identities = 288/418 (69%), Gaps = 4/418 (1%)
Strand=Plus/Minus
Query 9225 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGT-TTCATTATCAAA 9283
||||| ||||| | || || || || || | |||| ||||||||| ||| | |||||
Sbjct 3664 TCAAGAATATCTGCACGGTTGGTAGCTGCAACTACAATAATACCTGTGTTCCCT-TCAAA 3606
Query 9284 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 9343
||||||||||| |||||||| ||||| | |||||||| | |||||||||| |
Sbjct 3605 GCCATCCATCTCGGTCAAAAGCTGGTTCAGCGTTTGTTCTCTTTCATCATTCCCACCTCC 3546
Query 9344 ACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACATGG 9403
| ||||| | | |||| || || |||||||| ||||||| || |||||||| ||
Sbjct 3545 AATACCAGTCCCCCTTTGCCGCCCAACAGCATCAATTTCATCAACAAACACAATACAAGG 3486
Query 9404 TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAA 9463
||| || ||| | | |||||||| | ||| ||| || || |||||||||||
Sbjct 3485 AGCATTCTCCTTGGCCTTCTTGAAGAGATCTCTAACTCTTGAAGCACCAACACCAACAAA 3426
Query 9464 CATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAA 9522
|||||| ||||| | | | ||| || | || || || ||| | |||||| ||||
Sbjct 3425 CATCTCAACAAACTCCGAACCCGAA-ATAGAGAAAAACGGAACACCTGCTTCACCAGCAA 3367
Query 9523 TGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTG 9582
|||| || || || || || || || || || |||| | || || ||||| |
Sbjct 3366 TGGCCTTTGCTAGCAGTGTTTTTCCAGTTCCCGGAGGACCCACAAGAAGAACACCCTTCG 3307
Query 9583 GAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAATCTC 9640
||||| || ||| || | | ||||| || | ||| ||||| || |||| |||
Sbjct 3306 GAATCCGAGCACCAACAGCAGTGAACCTCTCTGGCTTCTTTAGAAACTCGACAACCTC 3249
>seq293582
Length=2029
Score = 91.5 bits (100), Expect = 2e-13
Identities = 110/150 (73%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344
||| || || || || | || || | ||| || ||||| |||||| ||||| || ||
Sbjct 1311 GTGCAGGCCTTCGTCCCTCGAGATCAATTCGTTGGAGAACGTTAGGCCCGGCATCAGGCC 1370
Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404
|||||||| | ||| | || |||||||| |||||||||||||| ||||| |||||
Sbjct 1371 GCGCTTCTTGAGCCAGAAGATGGCGCAGAAGCTTCCGGAGAAGAAGATGCCCTCGACACA 1430
Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAGGA 117434
|| || || | | ||||| ||||||||
Sbjct 1431 GGCGAAGGCGACGATCCGCTCCGCGAAGGA 1460
>seq180108
Length=14591
Score = 84.2 bits (92), Expect = 3e-11
Identities = 161/230 (70%), Gaps = 8/230 (3%)
Strand=Plus/Plus
Query 107168 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TG 107226
|| || |||||||| ||||||||||||||||| || | || ||| ||||| |||| ||
Sbjct 8705 TGGGGCCTTGGTGTTCCAGCATTGAAGAGGGTGGGAGAAGCATGAGTGAAC-CACCTCTG 8763
Query 107227 GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGC 107286
|||||| || || ||| | ||||||||||| | ||| || || || | ||
Sbjct 8764 TGACATCAAGTGATAAGTCCTGATAACAGAATCAATATTATCCTTATGAATCCCAACTGC 8823
Query 107287 CACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGA--AGA 107344
|| | ||| | ||| | ||| || |||| | | | || | || | || | |||
Sbjct 8824 AACCCTCATCAGCATATGTTGAGGCCTTTCAACAACTTTCCCTTGGATC--TTCAATAGA 8881
Query 107345 T-AGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCC 107393
| || || ||||||||||||| | |||||| ||| || | ||| ||||||
Sbjct 8882 TAAGATC-TCTCAAGGGTTTTAAAACCAAAATAATCATAGTCAAAGTCCC 8930
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 586559604587440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |