Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq107965 293 3e-74 seq169634 199 5e-46 seq300680 174 2e-38 seq250312 161 1e-34 seq301434 140 4e-28 seq10884 125 8e-24 seq8631 116 4e-21 seq254652 89.7 6e-13 seq33322 87.8 2e-12 seq231965 86.0 7e-12 seq35354 86.0 7e-12 >seq107965 Length=6474 Score = 293 bits (324), Expect = 3e-74 Identities = 390/542 (72%), Gaps = 0/542 (0%) Strand=Plus/Plus Query 169615 GCTATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACTGTTGATGAATGGTTGTAT 169674 ||||| || | || || |||||||| ||||||||| || |||||||||||||||| || Sbjct 5921 GCTATAGGTTTGCATTTTTACCCAATATGGGAAGCAACATCTGTTGATGAATGGTTATAC 5980 Query 169675 AATGGTGGTCCTTATCAGTTGGTAATCTTCCACTTCCTTATTGGTATCTCAGCATACATG 169734 ||||||||||||||| | | | | | |||||| | ||||| | | |||||| Sbjct 5981 AATGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATG 6040 Query 169735 GGAAGACAGTGGGAACTATCATACAGATTAGGAATGCGTCCTTGGATCTGTGTTGCATAC 169794 || | |||||||||| | | | || ||||| ||||||| ||||||||| Sbjct 6041 GGTCGTGAGTGGGAACTTAGTTTTCGTCTGGGTATGCGAACTTGGATGGTTGTTGCATAT 6100 Query 169795 TCTGCACCAGTATCTGCTGCATTCGCTGTATTCTTAGTATACCCATTTGGTCAGGGTTCA 169854 || || || || | ||||| | ||| ||||| | |||||| ||||||| || Sbjct 6101 TCAGCTCCTGTTGCAGCTGCGAGTGTTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGC 6160 Query 169855 TTCTCTGATGGTATGCCACTAGGTATCTCAGGTACTTTCAACTTTATGTTCGTTTTCCAA 169914 || |||||||||||||| ||||| || || |||||||||||||| ||| | || ||||| Sbjct 6161 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 6220 Query 169915 GCAGAGCATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTCGGA 169974 || ||||| |||||||| ||||| || || |||||| ||| ||||| || | |||| Sbjct 6221 GCTGAGCACAACATTCTTATGCACCCATTTCACATGCTAGGTGTAGCTGGTGTAATCGGC 6280 Query 169975 GGATCTTTATTCTCAGCAATGCATGGTTCACTTGTTACTTCATCTCTAATCAGAGAAACA 170034 || || ||||| || ||||||||||| | || || || | | | ||||| ||||| Sbjct 6281 GGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTTGTTTGATCAGGGAAACC 6340 Query 170035 ACAGAGCAAGAGTCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAAACATACAAC 170094 ||||| | | || || | ||||| | || || | |||||| ||||| || || Sbjct 6341 ACAGAAAATAAATCTGCTAATGAAGGTTACAGATTTGGTCTAGAAGATGAAACTTATAAT 6400 Query 170095 ATAGTAGCAGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCATTCAACAAC 170154 || ||||| | || ||||| ||||| || | |||||||| |||||| ||||||||| Sbjct 6401 ATCGTAGCCGTTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAAC 6460 Query 170155 TC 170156 || Sbjct 6461 TC 6462 >seq169634 Length=720 Score = 199 bits (220), Expect = 5e-46 Identities = 308/437 (70%), Gaps = 2/437 (0%) Strand=Plus/Minus Query 169442 TTGGTTGGTTTGGTGTTCTAATGATTCCATGCTTACTCACAGCAGCAGCATGT-TTCATC 169500 |||| |||||||||||| | ||||| || |||| | || ||| | | ||| || || Sbjct 437 TTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTC-TGTATTTATT 379 Query 169501 GTTGCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTAGCGGGT 169560 | || |||||||| || ||||| || ||||| || || || | ||||| || || Sbjct 378 ATCGCTTTCATTGCTGCTCCTCCAGTGGATATTGATGGTATTCGTGAACCTGTTTATGGA 319 Query 169561 TCTTTCTTGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCTATC 169620 ||| | ||||| ||||| || || || |||| || |||| | || ||||| Sbjct 318 TCTCTAAGTTATGGAAACAATATTATTTCAGGTGTCATTATTCCTACTTCTGCAGCTATA 259 Query 169621 GGACTACACTTCTACCCAATCTGGGAAGCAGCAACTGTTGATGAATGGTTGTATAATGGT 169680 || | || || |||||||| |||||||||||| | |||||||||||||| || |||||| Sbjct 258 GGTTTGCATTTTTACCCAATATGGGAAGCAGCATCCGTTGATGAATGGTTATACAATGGT 199 Query 169681 GGTCCTTATCAGTTGGTAATCTTCCACTTCCTTATTGGTATCTCAGCATACATGGGAAGA 169740 ||||||||| | | | | | |||||| | ||||| | | |||||||| | Sbjct 198 GGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGT 139 Query 169741 CAGTGGGAACTATCATACAGATTAGGAATGCGTCCTTGGATCTGTGTTGCATACTCTGCA 169800 |||||||||| | | | | || ||||| |||||||| ||||||||| || || Sbjct 138 GAGTGGGAACTTAGTTTCCGTCTGGGTATGCGACCTTGGATTGTTGTTGCATATTCAGCT 79 Query 169801 CCAGTATCTGCTGCATTCGCTGTATTCTTAGTATACCCATTTGGTCAGGGTTCATTCTCT 169860 | || | |||||| ||||| ||||| | |||||| ||||||| || || ||| Sbjct 78 TCTGTTGCAGCTGCAACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCT 19 Query 169861 GATGGTATGCCACTAGG 169877 ||||||||||| ||||| Sbjct 18 GATGGTATGCCTCTAGG 2 >seq300680 Length=3790 Score = 174 bits (192), Expect = 2e-38 Identities = 222/303 (73%), Gaps = 2/303 (1%) Strand=Plus/Minus Query 169855 TTCTCTGATGGTATGCCACTAGGTATCTCAGGTACTTTCAACTTTATGTTCGTTTTCCAA 169914 || |||||||||||||| ||||| || || |||||||||||||| ||| | || ||||| Sbjct 670 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 611 Query 169915 GCAGAGCATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTCGGA 169974 | ||||| |||||||| ||||| || || |||||| | | ||||| || | ||| Sbjct 610 GTTGAGCACAACATTCTTATGCACCCATTTCACATGCTAAGCGTAGCTGGTGTACTCGTC 551 Query 169975 GGATCTTTATTCTCAGCAATGCATGGTTCACTTGTTACTTCATCTCTAATCAGAGAAACA 170034 | || |||| || ||||||||||| | || || || | ||||||| ||||| Sbjct 550 AGCTCCCTATTTAATGCTATGCATGGTTCCTTGGTAACCTCTAGTTTAATCAG-GAAACC 492 Query 170035 ACAGAGCAAGAGTCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAG-AAACATACAA 170093 | ||| | || | || | ||||| || ||||| |||||||||| |||| || || Sbjct 491 AGAGAAAATGAATTTGCTAATGAAGGTTACAAATTCGGTCAAGAAGAAGAAAACTTATAA 432 Query 170094 CATAGTAGCAGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCATTCAACAA 170153 || ||||| || || ||||| ||||| || | |||||||||||||| |||||||| Sbjct 431 TATCGTAGCCGCTCATGGTTATTTTGGCCGATTGGTCTTCCAGTATGCTAGTTTCAACAA 372 Query 170154 CTC 170156 ||| Sbjct 371 CTC 369 >seq250312 Length=8481 Score = 161 bits (178), Expect = 1e-34 Identities = 317/466 (68%), Gaps = 17/466 (4%) Strand=Plus/Plus Query 169918 GAGCATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTCGGAGGA 169977 ||||| |||||||| | ||| | || |||||| ||| ||||| || | | || | Sbjct 1574 GAGCACAACATTCTTAGGCACTCATTTCACATGCTAGGCGTAGCTGGTGTAATTGGCAGC 1633 Query 169978 TCTTTATTCTCAGCAATGCATGGTTCACTTGTTACTTCATCTCTAATCAGAGAAACAACA 170037 || ||||| || |||| |||||| | || || | | | ||||| ||||| ||| Sbjct 1634 TCCCTATTCAGTGCTATGCGTGGTTCCTTGGTAACCCCTAGTTTGATCAGGGAAACCACA 1693 Query 170038 GAGCAAGAGTCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAAACATACAACATA 170097 || | || | | || | ||||||| ||||| ||||||| ||||| || || || Sbjct 1694 AAGAATGAATAAGCTAATGAAGGTTATATATTCGGTCAAGAAGGAGAAAATTAGAATATT 1753 Query 170098 GTAGCAGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCATTCAACAACTCA 170157 ||||| || || ||||| |||||||| | ||||||| ||||| |||||||||||| Sbjct 1754 GTAGCCGCTCATGGTTATTTTGGTCGATTGATCTTCCGACATGCTAGTTTCAACAACTCA 1813 Query 170158 AGAAGTCTACACTTCTTCCTAGC-AGTTTTCC---CTGTTGTATGTGTATGGTTAACCTC 170213 | | |||| ||||||||||| | || || ||| | ||| ||| |||| Sbjct 1814 CGTTTTTTACATTTCTTCCTAGCTACTTGGCCTATCTGGTTTAT-TGT---GTTA----- 1864 Query 170214 TATGGGTATCTGCACAATGGCATTCAACTTGAATGGTTTCAACTTTAACCAATCAGTTGT 170273 |||||| |||| ||||| | |||| | |||||||| | || | ||||| || || Sbjct 1865 ----GGTATCAGCACTATGGCTTACAACCTAAATGGTTTTAGTTTCCATCAATCTGTAGT 1920 Query 170274 TGATGCTAACGGAAAAATCGTCCCAACATGGGGTGATGTTCTAAACAGAGCAAACTTGGG 170333 || | | | | | | || |||| |||| | | ||| | || ||| | || Sbjct 1921 CGACAGTCAATGTCATGTAATTAATACTTGGGCTGATATCATTAACTGTGCTAACCTTGG 1980 Query 170334 TATGGAAGTTATGCATGAAAGAAATGCACACAACTTCCCACTAGAC 170379 ||||||||||||| ||||| | ||||| || || ||||| |||||| Sbjct 1981 TATGGAAGTTATGTATGAATGTAATGCTCATAATTTCCCTCTAGAC 2026 >seq301434 Length=6657 Score = 140 bits (154), Expect = 4e-28 Identities = 178/243 (73%), Gaps = 4/243 (2%) Strand=Plus/Plus Query 153732 GGTGAGTGGGGATTTGATATTGCTGTAGGTAGTATGCAAAGGTTTGGTATTCCTATGGGA 153791 ||||||| ||| ||||||||| || ||| ||||| ||||| |||| ||||| Sbjct 3156 GGTGAGTTTGGAGTTGATATTGTGGTGGGTTCGGCTCAAAGATTTGGAGTTCCGATGGGG 3215 Query 153792 TATGGAGGTCCTCATGCTGCATTCTTTGCAACAACAGACAAGTATAAGAGAAAGATACCT 153851 ||||||||||||||||| || || ||||||| || | |||| ||||| | ||| || Sbjct 3216 TATGGAGGTCCTCATGCGGCGTTTCTTGCAACGTCACAAGAGTACAAGAGGATGATGCCC 3275 Query 153852 GGCAGAATTGTAG--GTCAGTCAGTAGATAGTGAAGGTAATAAAGCATACAGATTAGCAC 153909 || |||||| | | || ||| || ||| | || || || | | | || Sbjct 3276 GGAAGAATTATTGGTGTTAGT--GTTGATTCTTCGGGCAAGCCTGCTTTACGTATGGCGA 3333 Query 153910 TACAGACTAGAGAGCAGCATATCAGGAGAGACAAAGCAACCAGTAACATCTGCACAGCTC 153969 | ||||| |||||||| |||||||||||||||||||| ||||| ||||| |||||||||| Sbjct 3334 TGCAGACAAGAGAGCAACATATCAGGAGAGACAAAGCTACCAGCAACATTTGCACAGCTC 3393 Query 153970 AGG 153972 ||| Sbjct 3394 AGG 3396 >seq10884 Length=5042 Score = 125 bits (138), Expect = 8e-24 Identities = 117/149 (79%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 169855 TTCTCTGATGGTATGCCACTAGGTATCTCAGGTACTTTCAACTTTATGTTCGTTTTCCAA 169914 || |||||||||||||| ||||| || || |||||||||||||| ||| | || ||||| Sbjct 3789 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 3848 Query 169915 GCAGAGCATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTCGGA 169974 || ||||| |||||||| ||||| || || |||||| ||| ||||| || | ||||| Sbjct 3849 GCTGAGCACAACATTCTTATGCACCCATTTCACATGCTAGGCGTAGCTGGTGTATTCGGC 3908 Query 169975 GGATCTTTATTCTCAGCAATGCATGGTTC 170003 || || ||||| || || |||||||| Sbjct 3909 GGCTCCCTATTCATTGCTATACATGGTTC 3937 >seq8631 Length=609 Score = 116 bits (128), Expect = 4e-21 Identities = 119/153 (78%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 169860 TGATGGTATGCCACTAGGTATCTCAGGTACTTTCAACTTTATGTTCGTTTTCCAAGCAGA 169919 |||||||||||| ||||| || || |||||||||||||| ||| | || ||||| || || Sbjct 330 TGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCCGA 271 Query 169920 GCATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTCGGAGGAT- 169978 ||| |||||||| ||||| || || |||||| || ||||| || | ||||| || | Sbjct 270 GCACAACATTCTTATGCACCCATTTCACATGCTAGACGTAGCTGGTGTATTCGGCGGCTC 211 Query 169979 CTTTATTCTCAGCAATGCATGGTTCACTTGTTA 170011 | | |||| || ||||||||||| |||| || Sbjct 210 CCTAATTCAGTGCTATGCATGGTTC-CTTGGTA 179 Score = 82.4 bits (90), Expect = 9e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 169627 CACTTCTACCCAATCTGGGAAGCAGCAACTGTTGATGAATGGTTGTATAATGGTGGTCCT 169686 || || |||||||| |||||||||||| | ||||||||||||| || |||||||||||| Sbjct 497 CATTTTTACCCAATATGGGAAGCAGCATCCATTGATGAATGGTTATACAATGGTGGTCCT 438 Query 169687 TATCAGTTGGTAATCTTCCACTTCCTTATTGGTATCTCAGCATACATGGGAAGACAGTGG 169746 ||| | | | | | |||||| | ||||| | | |||||||| | ||||| Sbjct 437 TATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGG 378 Query 169747 GAACT 169751 ||||| Sbjct 377 GAACT 373 >seq254652 Length=6058 Score = 89.7 bits (98), Expect = 6e-13 Identities = 161/234 (69%), Gaps = 1/234 (0%) Strand=Plus/Plus Query 169570 TATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCTATCGGACTACAC 169629 ||||| ||||| || || || |||| ||| |||| | || | |||| || | || Sbjct 711 TATGGAAACAATATTATTTCAGGTGTTGTTATTCCTACTTCTACAGCTACAGGTTTGCAT 770 Query 169630 TTCTACCCAATCTGGGAAGCAGCAACTGTTGATGAATGG-TTGTATAATGGTGGTCCTTA 169688 || |||| ||| | ||||||| || ||||||||||||| || || |||||||||||||| Sbjct 771 TTTTACCTAATATAGGAAGCAACATTTGTTGATGAATGGTTTATACAATGGTGGTCCTTA 830 Query 169689 TCAGTTGGTAATCTTCCACTTCCTTATTGGTATCTCAGCATACATGGGAAGACAGTGGGA 169748 | | | | | | |||||| | ||||| | | |||||||| | ||||||| Sbjct 831 TGAACTAATTGTACTACACTTCTTACTTGGTGTAGCGTGTTACATGGGTCGCGAGTGGGA 890 Query 169749 ACTATCATACAGATTAGGAATGCGTCCTTGGATCTGTGTTGCATACTCTGCACC 169802 ||| | | | | || |||| |||| ||| ||||||||| || || || Sbjct 891 ACTTAGTTTCCGTCTGGGTGTGCGACCTTTGATTGTTGTTGCATATTCAGCTCC 944 >seq33322 Length=15627 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 171012 GCAGCAATTTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTACATTGAATCCA 171071 ||||| || ||||| | |||| | || | ||||| || || ||| |||||||| ||| Sbjct 6657 GCAGCTATATTTCGATTTATCCTCTTTTTTCAAGGATTTCATAACTGGACATTGAACCCA 6716 Query 171072 TTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTATTATGTGCCATTCATGGT 171131 ||||| |||||||| ||||| || || | |||| || || |||| || ||||||||| Sbjct 6717 TTTCATATGATGGGAGTTGCCGGTGTATTGGGTGCTGCTTTGCTATGCGCTATTCATGGT 6776 Query 171132 GCAACAGT 171139 || || || Sbjct 6777 GCTACCGT 6784 >seq231965 Length=7494 Score = 86.0 bits (94), Expect = 7e-12 Identities = 131/187 (70%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 169774 CCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCTGCATTCGCTGTATTCTTAGTA 169833 |||||||| ||||||||| | || | || | |||| | ||| ||||| | Sbjct 6582 CCTTGGATTATTGTTGCATATCCAGCTCTTGTTGCAACTGCGACTGATGTTTTCTTGATC 6641 Query 169834 TACCCATTTGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACTTTC 169893 |||||| || |||| | || ||| ||||||| || ||||| || | ||||||||| Sbjct 6642 TACCCAATTTGTCAATGAAGCTTTTCTCATGGTATTCCTCTAGGAATTTATGGTACTTTC 6701 Query 169894 AACTTTATGTTCGTTTTCCAAGCAGAGCATAACATTCTAATGCATCCTTTCCACATGGCA 169953 ||||| ||| | || || | | ||||| |||||||| ||||| || || ||||| | Sbjct 6702 AACTTCATGATTGTATTTAAGGTTGAGCACAACATTCTTATGCACCCATTTTACATGCTA 6761 Query 169954 GGAGTAG 169960 || |||| Sbjct 6762 GGCGTAG 6768 >seq35354 Length=12468 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 169615 GCTATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACTGTTGATGAATGGTTGTAT 169674 ||||| || | || || |||||||| |||||||||||| | |||||||||||||| || Sbjct 10537 GCTATAGGTTTGCATTTTTACCCAATATGGGAAGCAGCATCCGTTGATGAATGGTTATAC 10596 Query 169675 AATGGTGGTCCTTAT 169689 ||||||||||||||| Sbjct 10597 AATGGTGGTCCTTAT 10611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 575854046335040