Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27]
463,906 sequences; 661,937,708 total letters
Query= NC_015280.1
Length=181044
Score E
Sequences producing significant alignments: (Bits) Value
seq107965 293 3e-74
seq169634 199 5e-46
seq300680 174 2e-38
seq250312 161 1e-34
seq301434 140 4e-28
seq10884 125 8e-24
seq8631 116 4e-21
seq254652 89.7 6e-13
seq33322 87.8 2e-12
seq231965 86.0 7e-12
seq35354 86.0 7e-12
>seq107965
Length=6474
Score = 293 bits (324), Expect = 3e-74
Identities = 390/542 (72%), Gaps = 0/542 (0%)
Strand=Plus/Plus
Query 169615 GCTATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACTGTTGATGAATGGTTGTAT 169674
||||| || | || || |||||||| ||||||||| || |||||||||||||||| ||
Sbjct 5921 GCTATAGGTTTGCATTTTTACCCAATATGGGAAGCAACATCTGTTGATGAATGGTTATAC 5980
Query 169675 AATGGTGGTCCTTATCAGTTGGTAATCTTCCACTTCCTTATTGGTATCTCAGCATACATG 169734
||||||||||||||| | | | | | |||||| | ||||| | | ||||||
Sbjct 5981 AATGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATG 6040
Query 169735 GGAAGACAGTGGGAACTATCATACAGATTAGGAATGCGTCCTTGGATCTGTGTTGCATAC 169794
|| | |||||||||| | | | || ||||| ||||||| |||||||||
Sbjct 6041 GGTCGTGAGTGGGAACTTAGTTTTCGTCTGGGTATGCGAACTTGGATGGTTGTTGCATAT 6100
Query 169795 TCTGCACCAGTATCTGCTGCATTCGCTGTATTCTTAGTATACCCATTTGGTCAGGGTTCA 169854
|| || || || | ||||| | ||| ||||| | |||||| ||||||| ||
Sbjct 6101 TCAGCTCCTGTTGCAGCTGCGAGTGTTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGC 6160
Query 169855 TTCTCTGATGGTATGCCACTAGGTATCTCAGGTACTTTCAACTTTATGTTCGTTTTCCAA 169914
|| |||||||||||||| ||||| || || |||||||||||||| ||| | || |||||
Sbjct 6161 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 6220
Query 169915 GCAGAGCATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTCGGA 169974
|| ||||| |||||||| ||||| || || |||||| ||| ||||| || | ||||
Sbjct 6221 GCTGAGCACAACATTCTTATGCACCCATTTCACATGCTAGGTGTAGCTGGTGTAATCGGC 6280
Query 169975 GGATCTTTATTCTCAGCAATGCATGGTTCACTTGTTACTTCATCTCTAATCAGAGAAACA 170034
|| || ||||| || ||||||||||| | || || || | | | ||||| |||||
Sbjct 6281 GGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTTGTTTGATCAGGGAAACC 6340
Query 170035 ACAGAGCAAGAGTCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAAACATACAAC 170094
||||| | | || || | ||||| | || || | |||||| ||||| || ||
Sbjct 6341 ACAGAAAATAAATCTGCTAATGAAGGTTACAGATTTGGTCTAGAAGATGAAACTTATAAT 6400
Query 170095 ATAGTAGCAGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCATTCAACAAC 170154
|| ||||| | || ||||| ||||| || | |||||||| |||||| |||||||||
Sbjct 6401 ATCGTAGCCGTTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAAC 6460
Query 170155 TC 170156
||
Sbjct 6461 TC 6462
>seq169634
Length=720
Score = 199 bits (220), Expect = 5e-46
Identities = 308/437 (70%), Gaps = 2/437 (0%)
Strand=Plus/Minus
Query 169442 TTGGTTGGTTTGGTGTTCTAATGATTCCATGCTTACTCACAGCAGCAGCATGT-TTCATC 169500
|||| |||||||||||| | ||||| || |||| | || ||| | | ||| || ||
Sbjct 437 TTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTC-TGTATTTATT 379
Query 169501 GTTGCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTAGCGGGT 169560
| || |||||||| || ||||| || ||||| || || || | ||||| || ||
Sbjct 378 ATCGCTTTCATTGCTGCTCCTCCAGTGGATATTGATGGTATTCGTGAACCTGTTTATGGA 319
Query 169561 TCTTTCTTGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCTATC 169620
||| | ||||| ||||| || || || |||| || |||| | || |||||
Sbjct 318 TCTCTAAGTTATGGAAACAATATTATTTCAGGTGTCATTATTCCTACTTCTGCAGCTATA 259
Query 169621 GGACTACACTTCTACCCAATCTGGGAAGCAGCAACTGTTGATGAATGGTTGTATAATGGT 169680
|| | || || |||||||| |||||||||||| | |||||||||||||| || ||||||
Sbjct 258 GGTTTGCATTTTTACCCAATATGGGAAGCAGCATCCGTTGATGAATGGTTATACAATGGT 199
Query 169681 GGTCCTTATCAGTTGGTAATCTTCCACTTCCTTATTGGTATCTCAGCATACATGGGAAGA 169740
||||||||| | | | | | |||||| | ||||| | | |||||||| |
Sbjct 198 GGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGT 139
Query 169741 CAGTGGGAACTATCATACAGATTAGGAATGCGTCCTTGGATCTGTGTTGCATACTCTGCA 169800
|||||||||| | | | | || ||||| |||||||| ||||||||| || ||
Sbjct 138 GAGTGGGAACTTAGTTTCCGTCTGGGTATGCGACCTTGGATTGTTGTTGCATATTCAGCT 79
Query 169801 CCAGTATCTGCTGCATTCGCTGTATTCTTAGTATACCCATTTGGTCAGGGTTCATTCTCT 169860
| || | |||||| ||||| ||||| | |||||| ||||||| || || |||
Sbjct 78 TCTGTTGCAGCTGCAACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCT 19
Query 169861 GATGGTATGCCACTAGG 169877
||||||||||| |||||
Sbjct 18 GATGGTATGCCTCTAGG 2
>seq300680
Length=3790
Score = 174 bits (192), Expect = 2e-38
Identities = 222/303 (73%), Gaps = 2/303 (1%)
Strand=Plus/Minus
Query 169855 TTCTCTGATGGTATGCCACTAGGTATCTCAGGTACTTTCAACTTTATGTTCGTTTTCCAA 169914
|| |||||||||||||| ||||| || || |||||||||||||| ||| | || |||||
Sbjct 670 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 611
Query 169915 GCAGAGCATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTCGGA 169974
| ||||| |||||||| ||||| || || |||||| | | ||||| || | |||
Sbjct 610 GTTGAGCACAACATTCTTATGCACCCATTTCACATGCTAAGCGTAGCTGGTGTACTCGTC 551
Query 169975 GGATCTTTATTCTCAGCAATGCATGGTTCACTTGTTACTTCATCTCTAATCAGAGAAACA 170034
| || |||| || ||||||||||| | || || || | ||||||| |||||
Sbjct 550 AGCTCCCTATTTAATGCTATGCATGGTTCCTTGGTAACCTCTAGTTTAATCAG-GAAACC 492
Query 170035 ACAGAGCAAGAGTCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAG-AAACATACAA 170093
| ||| | || | || | ||||| || ||||| |||||||||| |||| || ||
Sbjct 491 AGAGAAAATGAATTTGCTAATGAAGGTTACAAATTCGGTCAAGAAGAAGAAAACTTATAA 432
Query 170094 CATAGTAGCAGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCATTCAACAA 170153
|| ||||| || || ||||| ||||| || | |||||||||||||| ||||||||
Sbjct 431 TATCGTAGCCGCTCATGGTTATTTTGGCCGATTGGTCTTCCAGTATGCTAGTTTCAACAA 372
Query 170154 CTC 170156
|||
Sbjct 371 CTC 369
>seq250312
Length=8481
Score = 161 bits (178), Expect = 1e-34
Identities = 317/466 (68%), Gaps = 17/466 (4%)
Strand=Plus/Plus
Query 169918 GAGCATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTCGGAGGA 169977
||||| |||||||| | ||| | || |||||| ||| ||||| || | | || |
Sbjct 1574 GAGCACAACATTCTTAGGCACTCATTTCACATGCTAGGCGTAGCTGGTGTAATTGGCAGC 1633
Query 169978 TCTTTATTCTCAGCAATGCATGGTTCACTTGTTACTTCATCTCTAATCAGAGAAACAACA 170037
|| ||||| || |||| |||||| | || || | | | ||||| ||||| |||
Sbjct 1634 TCCCTATTCAGTGCTATGCGTGGTTCCTTGGTAACCCCTAGTTTGATCAGGGAAACCACA 1693
Query 170038 GAGCAAGAGTCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAAACATACAACATA 170097
|| | || | | || | ||||||| ||||| ||||||| ||||| || || ||
Sbjct 1694 AAGAATGAATAAGCTAATGAAGGTTATATATTCGGTCAAGAAGGAGAAAATTAGAATATT 1753
Query 170098 GTAGCAGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCATTCAACAACTCA 170157
||||| || || ||||| |||||||| | ||||||| ||||| ||||||||||||
Sbjct 1754 GTAGCCGCTCATGGTTATTTTGGTCGATTGATCTTCCGACATGCTAGTTTCAACAACTCA 1813
Query 170158 AGAAGTCTACACTTCTTCCTAGC-AGTTTTCC---CTGTTGTATGTGTATGGTTAACCTC 170213
| | |||| ||||||||||| | || || ||| | ||| ||| ||||
Sbjct 1814 CGTTTTTTACATTTCTTCCTAGCTACTTGGCCTATCTGGTTTAT-TGT---GTTA----- 1864
Query 170214 TATGGGTATCTGCACAATGGCATTCAACTTGAATGGTTTCAACTTTAACCAATCAGTTGT 170273
|||||| |||| ||||| | |||| | |||||||| | || | ||||| || ||
Sbjct 1865 ----GGTATCAGCACTATGGCTTACAACCTAAATGGTTTTAGTTTCCATCAATCTGTAGT 1920
Query 170274 TGATGCTAACGGAAAAATCGTCCCAACATGGGGTGATGTTCTAAACAGAGCAAACTTGGG 170333
|| | | | | | | || |||| |||| | | ||| | || ||| | ||
Sbjct 1921 CGACAGTCAATGTCATGTAATTAATACTTGGGCTGATATCATTAACTGTGCTAACCTTGG 1980
Query 170334 TATGGAAGTTATGCATGAAAGAAATGCACACAACTTCCCACTAGAC 170379
||||||||||||| ||||| | ||||| || || ||||| ||||||
Sbjct 1981 TATGGAAGTTATGTATGAATGTAATGCTCATAATTTCCCTCTAGAC 2026
>seq301434
Length=6657
Score = 140 bits (154), Expect = 4e-28
Identities = 178/243 (73%), Gaps = 4/243 (2%)
Strand=Plus/Plus
Query 153732 GGTGAGTGGGGATTTGATATTGCTGTAGGTAGTATGCAAAGGTTTGGTATTCCTATGGGA 153791
||||||| ||| ||||||||| || ||| ||||| ||||| |||| |||||
Sbjct 3156 GGTGAGTTTGGAGTTGATATTGTGGTGGGTTCGGCTCAAAGATTTGGAGTTCCGATGGGG 3215
Query 153792 TATGGAGGTCCTCATGCTGCATTCTTTGCAACAACAGACAAGTATAAGAGAAAGATACCT 153851
||||||||||||||||| || || ||||||| || | |||| ||||| | ||| ||
Sbjct 3216 TATGGAGGTCCTCATGCGGCGTTTCTTGCAACGTCACAAGAGTACAAGAGGATGATGCCC 3275
Query 153852 GGCAGAATTGTAG--GTCAGTCAGTAGATAGTGAAGGTAATAAAGCATACAGATTAGCAC 153909
|| |||||| | | || ||| || ||| | || || || | | | ||
Sbjct 3276 GGAAGAATTATTGGTGTTAGT--GTTGATTCTTCGGGCAAGCCTGCTTTACGTATGGCGA 3333
Query 153910 TACAGACTAGAGAGCAGCATATCAGGAGAGACAAAGCAACCAGTAACATCTGCACAGCTC 153969
| ||||| |||||||| |||||||||||||||||||| ||||| ||||| ||||||||||
Sbjct 3334 TGCAGACAAGAGAGCAACATATCAGGAGAGACAAAGCTACCAGCAACATTTGCACAGCTC 3393
Query 153970 AGG 153972
|||
Sbjct 3394 AGG 3396
>seq10884
Length=5042
Score = 125 bits (138), Expect = 8e-24
Identities = 117/149 (79%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 169855 TTCTCTGATGGTATGCCACTAGGTATCTCAGGTACTTTCAACTTTATGTTCGTTTTCCAA 169914
|| |||||||||||||| ||||| || || |||||||||||||| ||| | || |||||
Sbjct 3789 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 3848
Query 169915 GCAGAGCATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTCGGA 169974
|| ||||| |||||||| ||||| || || |||||| ||| ||||| || | |||||
Sbjct 3849 GCTGAGCACAACATTCTTATGCACCCATTTCACATGCTAGGCGTAGCTGGTGTATTCGGC 3908
Query 169975 GGATCTTTATTCTCAGCAATGCATGGTTC 170003
|| || ||||| || || ||||||||
Sbjct 3909 GGCTCCCTATTCATTGCTATACATGGTTC 3937
>seq8631
Length=609
Score = 116 bits (128), Expect = 4e-21
Identities = 119/153 (78%), Gaps = 2/153 (1%)
Strand=Plus/Minus
Query 169860 TGATGGTATGCCACTAGGTATCTCAGGTACTTTCAACTTTATGTTCGTTTTCCAAGCAGA 169919
|||||||||||| ||||| || || |||||||||||||| ||| | || ||||| || ||
Sbjct 330 TGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCCGA 271
Query 169920 GCATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTCGGAGGAT- 169978
||| |||||||| ||||| || || |||||| || ||||| || | ||||| || |
Sbjct 270 GCACAACATTCTTATGCACCCATTTCACATGCTAGACGTAGCTGGTGTATTCGGCGGCTC 211
Query 169979 CTTTATTCTCAGCAATGCATGGTTCACTTGTTA 170011
| | |||| || ||||||||||| |||| ||
Sbjct 210 CCTAATTCAGTGCTATGCATGGTTC-CTTGGTA 179
Score = 82.4 bits (90), Expect = 9e-11
Identities = 93/125 (74%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 169627 CACTTCTACCCAATCTGGGAAGCAGCAACTGTTGATGAATGGTTGTATAATGGTGGTCCT 169686
|| || |||||||| |||||||||||| | ||||||||||||| || ||||||||||||
Sbjct 497 CATTTTTACCCAATATGGGAAGCAGCATCCATTGATGAATGGTTATACAATGGTGGTCCT 438
Query 169687 TATCAGTTGGTAATCTTCCACTTCCTTATTGGTATCTCAGCATACATGGGAAGACAGTGG 169746
||| | | | | | |||||| | ||||| | | |||||||| | |||||
Sbjct 437 TATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGG 378
Query 169747 GAACT 169751
|||||
Sbjct 377 GAACT 373
>seq254652
Length=6058
Score = 89.7 bits (98), Expect = 6e-13
Identities = 161/234 (69%), Gaps = 1/234 (0%)
Strand=Plus/Plus
Query 169570 TATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCTATCGGACTACAC 169629
||||| ||||| || || || |||| ||| |||| | || | |||| || | ||
Sbjct 711 TATGGAAACAATATTATTTCAGGTGTTGTTATTCCTACTTCTACAGCTACAGGTTTGCAT 770
Query 169630 TTCTACCCAATCTGGGAAGCAGCAACTGTTGATGAATGG-TTGTATAATGGTGGTCCTTA 169688
|| |||| ||| | ||||||| || ||||||||||||| || || ||||||||||||||
Sbjct 771 TTTTACCTAATATAGGAAGCAACATTTGTTGATGAATGGTTTATACAATGGTGGTCCTTA 830
Query 169689 TCAGTTGGTAATCTTCCACTTCCTTATTGGTATCTCAGCATACATGGGAAGACAGTGGGA 169748
| | | | | | |||||| | ||||| | | |||||||| | |||||||
Sbjct 831 TGAACTAATTGTACTACACTTCTTACTTGGTGTAGCGTGTTACATGGGTCGCGAGTGGGA 890
Query 169749 ACTATCATACAGATTAGGAATGCGTCCTTGGATCTGTGTTGCATACTCTGCACC 169802
||| | | | | || |||| |||| ||| ||||||||| || || ||
Sbjct 891 ACTTAGTTTCCGTCTGGGTGTGCGACCTTTGATTGTTGTTGCATATTCAGCTCC 944
>seq33322
Length=15627
Score = 87.8 bits (96), Expect = 2e-12
Identities = 96/128 (75%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 171012 GCAGCAATTTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTACATTGAATCCA 171071
||||| || ||||| | |||| | || | ||||| || || ||| |||||||| |||
Sbjct 6657 GCAGCTATATTTCGATTTATCCTCTTTTTTCAAGGATTTCATAACTGGACATTGAACCCA 6716
Query 171072 TTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTATTATGTGCCATTCATGGT 171131
||||| |||||||| ||||| || || | |||| || || |||| || |||||||||
Sbjct 6717 TTTCATATGATGGGAGTTGCCGGTGTATTGGGTGCTGCTTTGCTATGCGCTATTCATGGT 6776
Query 171132 GCAACAGT 171139
|| || ||
Sbjct 6777 GCTACCGT 6784
>seq231965
Length=7494
Score = 86.0 bits (94), Expect = 7e-12
Identities = 131/187 (70%), Gaps = 0/187 (0%)
Strand=Plus/Plus
Query 169774 CCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCTGCATTCGCTGTATTCTTAGTA 169833
|||||||| ||||||||| | || | || | |||| | ||| ||||| |
Sbjct 6582 CCTTGGATTATTGTTGCATATCCAGCTCTTGTTGCAACTGCGACTGATGTTTTCTTGATC 6641
Query 169834 TACCCATTTGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACTTTC 169893
|||||| || |||| | || ||| ||||||| || ||||| || | |||||||||
Sbjct 6642 TACCCAATTTGTCAATGAAGCTTTTCTCATGGTATTCCTCTAGGAATTTATGGTACTTTC 6701
Query 169894 AACTTTATGTTCGTTTTCCAAGCAGAGCATAACATTCTAATGCATCCTTTCCACATGGCA 169953
||||| ||| | || || | | ||||| |||||||| ||||| || || ||||| |
Sbjct 6702 AACTTCATGATTGTATTTAAGGTTGAGCACAACATTCTTATGCACCCATTTTACATGCTA 6761
Query 169954 GGAGTAG 169960
|| ||||
Sbjct 6762 GGCGTAG 6768
>seq35354
Length=12468
Score = 86.0 bits (94), Expect = 7e-12
Identities = 64/75 (85%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 169615 GCTATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACTGTTGATGAATGGTTGTAT 169674
||||| || | || || |||||||| |||||||||||| | |||||||||||||| ||
Sbjct 10537 GCTATAGGTTTGCATTTTTACCCAATATGGGAAGCAGCATCCGTTGATGAATGGTTATAC 10596
Query 169675 AATGGTGGTCCTTAT 169689
|||||||||||||||
Sbjct 10597 AATGGTGGTCCTTAT 10611
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 575854046335040
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