Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27]
463,906 sequences; 661,937,708 total letters
Query= NC_015283.1
Length=176428
Score E
Sequences producing significant alignments: (Bits) Value
seq107965 354 9e-93
seq300680 237 2e-57
seq169634 224 1e-53
seq250312 192 7e-44
seq10884 158 1e-33
seq8631 150 2e-31
seq231965 105 8e-18
seq254652 95.1 1e-14
seq138223 87.8 2e-12
seq176507 86.0 7e-12
seq463071 82.4 9e-11
>seq107965
Length=6474
Score = 354 bits (392), Expect = 9e-93
Identities = 433/588 (74%), Gaps = 2/588 (0%)
Strand=Plus/Plus
Query 168659 TATGGAAACAACATCATCTCAGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTACAC 168718
||||||||||| || || | |||| | || |||| ||| || || ||| | ||
Sbjct 5876 TATGGAAACAATATTATTTTAGGTACCATTATTCCTATTTCTGCAGCTATAGGTTTGCAT 5935
Query 168719 TTCTACCCAATTTGGGAAGCAGCTACAATCGATGAGTGGTTATATAATGGTGGTCCTTAC 168778
|| |||||||| ||||||||| | | | ||||| |||||||| ||||||||||||||
Sbjct 5936 TTTTACCCAATATGGGAAGCAACATCTGTTGATGAATGGTTATACAATGGTGGTCCTTAT 5995
Query 168779 CAGTTGGTAATCTTCCACTTCCTAATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAA 168838
| | | | | |||||| || | || | || ||||||||| | ||||||||
Sbjct 5996 GAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAA 6055
Query 168839 -TTATCATACAGACTAGGTATGAGACCTTGGATCTGTGTTGCTTATTCAGCACCAGTATC 168897
||| | | | || |||||| || ||||||| |||||| |||||||| || || |
Sbjct 6056 CTTAGTTTTC-GTCTGGGTATGCGAACTTGGATGGTTGTTGCATATTCAGCTCCTGTTGC 6114
Query 168898 TGCAGCATTTGCAGTATTCCTTGTATACCCATTTGGTCAGGGTTCTTTCTCTGATGGTAT 168957
|| || || || ||| | | |||||| ||||||| || || |||||||||||
Sbjct 6115 AGCTGCGAGTGTTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTAT 6174
Query 168958 GCCTCTAGGAATTTCTGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAGCACAACAT 169017
|||||||||||||||||| || |||||||||||| | |||||||| || |||||||||||
Sbjct 6175 GCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACAT 6234
Query 169018 TCTTATGCATCCCTTCCATATGGCAGGAGTAGCAGGTATGTTCGGTGGATCTCTATTCTC 169077
||||||||| || || || ||| ||| ||||| ||| | |||| || || ||||||
Sbjct 6235 TCTTATGCACCCATTTCACATGCTAGGTGTAGCTGGTGTAATCGGCGGCTCCCTATTCAG 6294
Query 169078 CGCAATGCATGGTTCACTTGTAACATCTTCTCTAATCAGAGAGACTACTGAGGAAGAATC 169137
|| ||||||||||| | ||||| |||| | | ||||| || || || || | ||||
Sbjct 6295 TGCTATGCATGGTTCCTTGGTAACCTCTTGTTTGATCAGGGAAACCACAGAAAATAAATC 6354
Query 169138 TCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCACA 169197
| || | ||||||| || |||| |||||| ||||| |||||||| || || | ||
Sbjct 6355 TGCTAATGAAGGTTACAGATTTGGTCTAGAAGATGAAACTTATAATATCGTAGCCGTTCA 6414
Query 169198 TGGATACTTCGGTAGATTAATCTTCCAGTATGCAAGTTTCAACAACTC 169245
||| || || || |||| |||||||| ||||| ||||||||||||||
Sbjct 6415 TGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTC 6462
>seq300680
Length=3790
Score = 237 bits (262), Expect = 2e-57
Identities = 236/303 (78%), Gaps = 2/303 (1%)
Strand=Plus/Minus
Query 168944 TTCTCTGATGGTATGCCTCTAGGAATTTCTGGAACATTCAACTTCATGTTCGTATTCCAA 169003
|| ||||||||||||||||||||||||||||| || |||||||||||| | ||||||||
Sbjct 670 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 611
Query 169004 GCAGAGCACAACATTCTTATGCATCCCTTCCATATGGCAGGAGTAGCAGGTATGTTCGGT 169063
| |||||||||||||||||||| || || || ||| | | ||||| ||| | |||
Sbjct 610 GTTGAGCACAACATTCTTATGCACCCATTTCACATGCTAAGCGTAGCTGGTGTACTCGTC 551
Query 169064 GGATCTCTATTCTCCGCAATGCATGGTTCACTTGTAACATCTTCTCTAATCAGAGAGACT 169123
| || ||||| || ||||||||||| | ||||| ||| | ||||||| || ||
Sbjct 550 AGCTCCCTATTTAATGCTATGCATGGTTCCTTGGTAACCTCTAGTTTAATCAG-GAAACC 492
Query 169124 ACTGAGGAAGAATCTCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAG-AAACCTATAA 169182
| || | |||| | || | |||||||| |||||||||||||||| |||| |||||
Sbjct 491 AGAGAAAATGAATTTGCTAATGAAGGTTACAAATTCGGTCAAGAAGAAGAAAACTTATAA 432
Query 169183 TATTGTTGCAGCACATGGATACTTCGGTAGATTAATCTTCCAGTATGCAAGTTTCAACAA 169242
||| || || || ||||| || || || |||| ||||||||||||| |||||||||||
Sbjct 431 TATCGTAGCCGCTCATGGTTATTTTGGCCGATTGGTCTTCCAGTATGCTAGTTTCAACAA 372
Query 169243 CTC 169245
|||
Sbjct 371 CTC 369
>seq169634
Length=720
Score = 224 bits (248), Expect = 1e-53
Identities = 322/451 (71%), Gaps = 2/451 (0%)
Strand=Plus/Minus
Query 168518 AACAGACTTTATGTTGGTTGGTTCGGTGTCTTAATGATCCCATGTTTATTAACAGCAGCA 168577
||| | ||||| |||| ||||| ||||| || |||||||| ||||| || ||| |
Sbjct 450 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACT 391
Query 168578 GCATGT-TTCATTGTTGCATTTATTGCTGCACCACCTGTCGATATCGACGGAATCAGAGA 168636
| ||| || ||| | || || |||||||| || || || ||||| || || || | ||
Sbjct 390 TC-TGTATTTATTATCGCTTTCATTGCTGCTCCTCCAGTGGATATTGATGGTATTCGTGA 332
Query 168637 ACCTGTAGCAGGTGCTCTAATGTATGGAAACAACATCATCTCAGGTGCAGTTGTTCCATC 168696
|||||| || |||||| ||||||||||| || || ||||||| || |||| |
Sbjct 331 ACCTGTTTATGGATCTCTAAGTTATGGAAACAATATTATTTCAGGTGTCATTATTCCTAC 272
Query 168697 TTCAAACGCAATCGGTCTACACTTCTACCCAATTTGGGAAGCAGCTACAATCGATGAGTG 168756
||| || || ||| | || || |||||||| ||||||||||| | | ||||| ||
Sbjct 271 TTCTGCAGCTATAGGTTTGCATTTTTACCCAATATGGGAAGCAGCATCCGTTGATGAATG 212
Query 168757 GTTATATAATGGTGGTCCTTACCAGTTGGTAATCTTCCACTTCCTAATCGGAATCTCTGC 168816
|||||| |||||||||||||| | | | | | |||||| || | || | ||
Sbjct 211 GTTATACAATGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTG 152
Query 168817 CTACATGGGTAGACAGTGGGAATTATCATACAGACTAGGTATGAGACCTTGGATCTGTGT 168876
||||||||| | |||||||| | | | | || |||||| |||||||||| |||
Sbjct 151 TTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGACCTTGGATTGTTGT 92
Query 168877 TGCTTATTCAGCACCAGTATCTGCAGCATTTGCAGTATTCCTTGTATACCCATTTGGTCA 168936
||| |||||||| | || | || ||| ||| || ||| | | |||||| |||||||
Sbjct 91 TGCATATTCAGCTTCTGTTGCAGCTGCAACTGCTGTTTTCTTGATCTACCCAATTGGTCA 32
Query 168937 GGGTTCTTTCTCTGATGGTATGCCTCTAGGA 168967
|| || |||||||||||||||||||||
Sbjct 31 AGGAAGCTTTTCTGATGGTATGCCTCTAGGA 1
>seq250312
Length=8481
Score = 192 bits (212), Expect = 7e-44
Identities = 321/462 (69%), Gaps = 9/462 (2%)
Strand=Plus/Plus
Query 169007 GAGCACAACATTCTTATGCATCCCTTCCATATGGCAGGAGTAGCAGGTATGTTCGGTGGA 169066
|||||||||||||||| ||| | || || ||| ||| ||||| ||| | | || |
Sbjct 1574 GAGCACAACATTCTTAGGCACTCATTTCACATGCTAGGCGTAGCTGGTGTAATTGGCAGC 1633
Query 169067 TCTCTATTCTCCGCAATGCATGGTTCACTTGTAACATCTTCTCTAATCAGAGAGACTACT 169126
|| |||||| || |||| |||||| | ||||| || | | ||||| || || ||
Sbjct 1634 TCCCTATTCAGTGCTATGCGTGGTTCCTTGGTAACCCCTAGTTTGATCAGGGAAACCACA 1693
Query 169127 GAGGAAGAATCTCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAAACCTATAATATT 169186
|| | |||| || | ||||| | ||||||||||||| ||||| || ||||||
Sbjct 1694 AAGAATGAATAAGCTAATGAAGGTTATATATTCGGTCAAGAAGGAGAAAATTAGAATATT 1753
Query 169187 GTTGCAGCACATGGATACTTCGGTAGATTAATCTTCCAGTATGCAAGTTTCAACAACTCA 169246
|| || || ||||| || || ||| |||| ||||||| |||| |||||||||||||||
Sbjct 1754 GTAGCCGCTCATGGTTATTTTGGTCGATTGATCTTCCGACATGCTAGTTTCAACAACTCA 1813
Query 169247 AGAAGTCTTCACTTCTTCCTAGCAGTGTTCCCAGTTGTATGTGTATGGTTAACCTCTATG 169306
| | | || ||||||||||| | | | ||| || | ||| | | |
Sbjct 1814 CGTTTTTTACATTTCTTCCTAGC-----TACTTGGCCTATCTG---GTTTATTGTGT-TA 1864
Query 169307 GGTATCTGTACAATGGCATTCAACTTGAACGGATTTAACTTTAACCAATCAGTTGTAGAT 169366
|||||| | || ||||| | |||| | || || |||| || | ||||| || || ||
Sbjct 1865 GGTATCAGCACTATGGCTTACAACCTAAATGGTTTTAGTTTCCATCAATCTGTAGTCGAC 1924
Query 169367 GTTAACGGTAAGATCATTCCTACATGGGGTGACGTACTTAACAGAGCAAACCTTGGTATG 169426
| | || | | ||| ||| |||| ||| | ||||| | || ||||||||||||
Sbjct 1925 AGTCAATGTCATGTAATTAATACTTGGGCTGATATCATTAACTGTGCTAACCTTGGTATG 1984
Query 169427 GAAGTAATGCATGAGCGTAACGCTCACAACTTCCCACTAGAC 169468
||||| ||| |||| |||| ||||| || ||||| ||||||
Sbjct 1985 GAAGTTATGTATGAATGTAATGCTCATAATTTCCCTCTAGAC 2026
>seq10884
Length=5042
Score = 158 bits (174), Expect = 1e-33
Identities = 132/162 (81%), Gaps = 0/162 (0%)
Strand=Plus/Plus
Query 168944 TTCTCTGATGGTATGCCTCTAGGAATTTCTGGAACATTCAACTTCATGTTCGTATTCCAA 169003
|| ||||||||||||||||||||||||||||| || |||||||||||| | ||||||||
Sbjct 3789 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 3848
Query 169004 GCAGAGCACAACATTCTTATGCATCCCTTCCATATGGCAGGAGTAGCAGGTATGTTCGGT 169063
|| |||||||||||||||||||| || || || ||| ||| ||||| ||| | |||||
Sbjct 3849 GCTGAGCACAACATTCTTATGCACCCATTTCACATGCTAGGCGTAGCTGGTGTATTCGGC 3908
Query 169064 GGATCTCTATTCTCCGCAATGCATGGTTCACTTGTAACATCT 169105
|| || |||||| || || |||||||| ||||| |||
Sbjct 3909 GGCTCCCTATTCATTGCTATACATGGTTCCTCGGTAACCTCT 3950
>seq8631
Length=609
Score = 150 bits (166), Expect = 2e-31
Identities = 129/158 (82%), Gaps = 1/158 (1%)
Strand=Plus/Minus
Query 168949 TGATGGTATGCCTCTAGGAATTTCTGGAACATTCAACTTCATGTTCGTATTCCAAGCAGA 169008
||||||||||||||||||||||||||| || |||||||||||| | |||||||| || ||
Sbjct 330 TGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCCGA 271
Query 169009 GCACAACATTCTTATGCATCCCTTCCATATGGCAGGAGTAGCAGGTATGTTCGGTGGATC 169068
|||||||||||||||||| || || || ||| || ||||| ||| | ||||| || ||
Sbjct 270 GCACAACATTCTTATGCACCCATTTCACATGCTAGACGTAGCTGGTGTATTCGGCGGCTC 211
Query 169069 TCT-ATTCTCCGCAATGCATGGTTCACTTGTAACATCT 169105
|| |||| || ||||||||||| | ||||| |||
Sbjct 210 CCTAATTCAGTGCTATGCATGGTTCCTTGGTAACCTCT 173
>seq231965
Length=7494
Score = 105 bits (116), Expect = 8e-18
Identities = 136/188 (72%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 168862 ACCTTGGATCTGTGTTGCTTATTCAGCACCAGTATCTGCAGCATTTGCAGTATTCCTTGT 168921
||||||||| |||||| ||| |||| | || | | || || || ||| | |
Sbjct 6581 ACCTTGGATTATTGTTGCATATCCAGCTCTTGTTGCAACTGCGACTGATGTTTTCTTGAT 6640
Query 168922 ATACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGAATTTCTGGAACATT 168981
|||||| || |||| | || ||| ||||||| ||||||||||||| ||| || ||
Sbjct 6641 CTACCCAATTTGTCAATGAAGCTTTTCTCATGGTATTCCTCTAGGAATTTATGGTACTTT 6700
Query 168982 CAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCATCCCTTCCATATGGC 169041
|||||||||| | ||||| | | |||||||||||||||||||| || || | |||
Sbjct 6701 CAACTTCATGATTGTATTTAAGGTTGAGCACAACATTCTTATGCACCCATTTTACATGCT 6760
Query 169042 AGGAGTAG 169049
||| ||||
Sbjct 6761 AGGCGTAG 6768
>seq254652
Length=6058
Score = 95.1 bits (104), Expect = 1e-14
Identities = 167/242 (69%), Gaps = 1/242 (0%)
Strand=Plus/Plus
Query 168651 CTCTAATGTATGGAAACAACATCATCTCAGGTGCAGTTGTTCCATCTTCAAACGCAATCG 168710
||||| | ||||||||||| || || ||||||| ||| |||| |||| | || | |
Sbjct 703 CTCTACTTTATGGAAACAATATTATTTCAGGTGTTGTTATTCCTACTTCTACAGCTACAG 762
Query 168711 GTCTACACTTCTACCCAATTTGGGAAGCAGCTACAATCGATGAGTGG-TTATATAATGGT 168769
|| | || || |||| ||| | ||||||| | | ||||| ||| ||||| ||||||
Sbjct 763 GTTTGCATTTTTACCTAATATAGGAAGCAACATTTGTTGATGAATGGTTTATACAATGGT 822
Query 168770 GGTCCTTACCAGTTGGTAATCTTCCACTTCCTAATCGGAATCTCTGCCTACATGGGTAGA 168829
|||||||| | | | | | |||||| || | || | | ||||||||| |
Sbjct 823 GGTCCTTATGAACTAATTGTACTACACTTCTTACTTGGTGTAGCGTGTTACATGGGTCGC 882
Query 168830 CAGTGGGAATTATCATACAGACTAGGTATGAGACCTTGGATCTGTGTTGCTTATTCAGCA 168889
|||||||| | | | | || ||| || |||||| ||| |||||| ||||||||
Sbjct 883 GAGTGGGAACTTAGTTTCCGTCTGGGTGTGCGACCTTTGATTGTTGTTGCATATTCAGCT 942
Query 168890 CC 168891
||
Sbjct 943 CC 944
>seq138223
Length=10580
Score = 87.8 bits (96), Expect = 2e-12
Identities = 174/252 (69%), Gaps = 17/252 (7%)
Strand=Plus/Minus
Query 168812 TCTGCCTACATGGGTAGACAGTGGGAA-TTATCATACAGACTAGGTATGAGACCTTGGAT 168870
|||| |||||| || |||||||| |||| | || ||||||||||||| ||||||
Sbjct 406 TCTGGTTACATGAGTCATGAGTGGGAACTTATTTTTCAT-CTAGGTATGAGACATTGGAT 348
Query 168871 CTGTGTTGCTTATTCAGCACCAGTATCTGCAGCATTTGCAGTATTCCTTGTATACCCATT 168930
| | |||| |||| ||| || || | | | || || ||| | | |||||| |
Sbjct 347 TTCTTTTGCATATTTAGCTCCTGTTGCAACTGGGACTGTTGTTTTCTTAATCTACCCAAT 288
Query 168931 TGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGAATT------TCTGGAACATTCA- 168983
|||||| || | | || ||||||||||||||||||| ||| ||| |||||
Sbjct 287 TGGTCAAGGAACCATGTC---TGGTATGCCTCTAGGAATTTTGATATCTTGAA-ATTCAT 232
Query 168984 -ACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCATCCCTTCCATATGGCA 169042
| | || || |||||| | | || ||||||| |||||| || || || ||| |
Sbjct 231 TATTGTATATTTGTATTCTAGGTCGAACACAACA---ATATGCACCCATTTCACATGTTA 175
Query 169043 GGAGTAGCAGGT 169054
|||||||| |||
Sbjct 174 GGAGTAGCCGGT 163
>seq176507
Length=311
Score = 86.0 bits (94), Expect = 7e-12
Identities = 61/70 (87%), Gaps = 0/70 (0%)
Strand=Plus/Plus
Query 169404 TTAACAGAGCAAACCTTGGTATGGAAGTAATGCATGAGCGTAACGCTCACAACTTCCCAC 169463
||||| | || ||||||||||||||||| |||||||| ||||| ||||| || ||||| |
Sbjct 107 TTAACCGGGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAATTTCCCTC 166
Query 169464 TAGACTTAGC 169473
||||||||||
Sbjct 167 TAGACTTAGC 176
>seq463071
Length=4227
Score = 82.4 bits (90), Expect = 9e-11
Identities = 83/107 (78%), Gaps = 2/107 (2%)
Strand=Plus/Minus
Query 168942 CTTTCTCTGATGGTATGCCTCTAGGAATTTCTGGAACATTCAACTTCATGTTCGTATTCC 169001
||||||| ||||||||| | ||||||||||| | || || |||||||| | ||||| |
Sbjct 1539 CTTTCTC--ATGGTATGCTTTTAGGAATTTCTAGTACTTTTTACTTCATGATTGTATTAC 1482
Query 169002 AAGCAGAGCACAACATTCTTATGCATCCCTTCCATATGGCAGGAGTA 169048
| | ||||||||||||||||| || | || || ||| ||| |||
Sbjct 1481 AGGTTGAGCACAACATTCTTATACACCTGTTTCACATGCTAGGTGTA 1435
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 561168501938880
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