Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_015283.1 Length=176428 Score E Sequences producing significant alignments: (Bits) Value seq107965 354 9e-93 seq300680 237 2e-57 seq169634 224 1e-53 seq250312 192 7e-44 seq10884 158 1e-33 seq8631 150 2e-31 seq231965 105 8e-18 seq254652 95.1 1e-14 seq138223 87.8 2e-12 seq176507 86.0 7e-12 seq463071 82.4 9e-11 >seq107965 Length=6474 Score = 354 bits (392), Expect = 9e-93 Identities = 433/588 (74%), Gaps = 2/588 (0%) Strand=Plus/Plus Query 168659 TATGGAAACAACATCATCTCAGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTACAC 168718 ||||||||||| || || | |||| | || |||| ||| || || ||| | || Sbjct 5876 TATGGAAACAATATTATTTTAGGTACCATTATTCCTATTTCTGCAGCTATAGGTTTGCAT 5935 Query 168719 TTCTACCCAATTTGGGAAGCAGCTACAATCGATGAGTGGTTATATAATGGTGGTCCTTAC 168778 || |||||||| ||||||||| | | | ||||| |||||||| |||||||||||||| Sbjct 5936 TTTTACCCAATATGGGAAGCAACATCTGTTGATGAATGGTTATACAATGGTGGTCCTTAT 5995 Query 168779 CAGTTGGTAATCTTCCACTTCCTAATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAA 168838 | | | | | |||||| || | || | || ||||||||| | |||||||| Sbjct 5996 GAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAA 6055 Query 168839 -TTATCATACAGACTAGGTATGAGACCTTGGATCTGTGTTGCTTATTCAGCACCAGTATC 168897 ||| | | | || |||||| || ||||||| |||||| |||||||| || || | Sbjct 6056 CTTAGTTTTC-GTCTGGGTATGCGAACTTGGATGGTTGTTGCATATTCAGCTCCTGTTGC 6114 Query 168898 TGCAGCATTTGCAGTATTCCTTGTATACCCATTTGGTCAGGGTTCTTTCTCTGATGGTAT 168957 || || || || ||| | | |||||| ||||||| || || ||||||||||| Sbjct 6115 AGCTGCGAGTGTTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTAT 6174 Query 168958 GCCTCTAGGAATTTCTGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAGCACAACAT 169017 |||||||||||||||||| || |||||||||||| | |||||||| || ||||||||||| Sbjct 6175 GCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACAT 6234 Query 169018 TCTTATGCATCCCTTCCATATGGCAGGAGTAGCAGGTATGTTCGGTGGATCTCTATTCTC 169077 ||||||||| || || || ||| ||| ||||| ||| | |||| || || |||||| Sbjct 6235 TCTTATGCACCCATTTCACATGCTAGGTGTAGCTGGTGTAATCGGCGGCTCCCTATTCAG 6294 Query 169078 CGCAATGCATGGTTCACTTGTAACATCTTCTCTAATCAGAGAGACTACTGAGGAAGAATC 169137 || ||||||||||| | ||||| |||| | | ||||| || || || || | |||| Sbjct 6295 TGCTATGCATGGTTCCTTGGTAACCTCTTGTTTGATCAGGGAAACCACAGAAAATAAATC 6354 Query 169138 TCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCACA 169197 | || | ||||||| || |||| |||||| ||||| |||||||| || || | || Sbjct 6355 TGCTAATGAAGGTTACAGATTTGGTCTAGAAGATGAAACTTATAATATCGTAGCCGTTCA 6414 Query 169198 TGGATACTTCGGTAGATTAATCTTCCAGTATGCAAGTTTCAACAACTC 169245 ||| || || || |||| |||||||| ||||| |||||||||||||| Sbjct 6415 TGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTC 6462 >seq300680 Length=3790 Score = 237 bits (262), Expect = 2e-57 Identities = 236/303 (78%), Gaps = 2/303 (1%) Strand=Plus/Minus Query 168944 TTCTCTGATGGTATGCCTCTAGGAATTTCTGGAACATTCAACTTCATGTTCGTATTCCAA 169003 || ||||||||||||||||||||||||||||| || |||||||||||| | |||||||| Sbjct 670 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 611 Query 169004 GCAGAGCACAACATTCTTATGCATCCCTTCCATATGGCAGGAGTAGCAGGTATGTTCGGT 169063 | |||||||||||||||||||| || || || ||| | | ||||| ||| | ||| Sbjct 610 GTTGAGCACAACATTCTTATGCACCCATTTCACATGCTAAGCGTAGCTGGTGTACTCGTC 551 Query 169064 GGATCTCTATTCTCCGCAATGCATGGTTCACTTGTAACATCTTCTCTAATCAGAGAGACT 169123 | || ||||| || ||||||||||| | ||||| ||| | ||||||| || || Sbjct 550 AGCTCCCTATTTAATGCTATGCATGGTTCCTTGGTAACCTCTAGTTTAATCAG-GAAACC 492 Query 169124 ACTGAGGAAGAATCTCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAG-AAACCTATAA 169182 | || | |||| | || | |||||||| |||||||||||||||| |||| ||||| Sbjct 491 AGAGAAAATGAATTTGCTAATGAAGGTTACAAATTCGGTCAAGAAGAAGAAAACTTATAA 432 Query 169183 TATTGTTGCAGCACATGGATACTTCGGTAGATTAATCTTCCAGTATGCAAGTTTCAACAA 169242 ||| || || || ||||| || || || |||| ||||||||||||| ||||||||||| Sbjct 431 TATCGTAGCCGCTCATGGTTATTTTGGCCGATTGGTCTTCCAGTATGCTAGTTTCAACAA 372 Query 169243 CTC 169245 ||| Sbjct 371 CTC 369 >seq169634 Length=720 Score = 224 bits (248), Expect = 1e-53 Identities = 322/451 (71%), Gaps = 2/451 (0%) Strand=Plus/Minus Query 168518 AACAGACTTTATGTTGGTTGGTTCGGTGTCTTAATGATCCCATGTTTATTAACAGCAGCA 168577 ||| | ||||| |||| ||||| ||||| || |||||||| ||||| || ||| | Sbjct 450 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACT 391 Query 168578 GCATGT-TTCATTGTTGCATTTATTGCTGCACCACCTGTCGATATCGACGGAATCAGAGA 168636 | ||| || ||| | || || |||||||| || || || ||||| || || || | || Sbjct 390 TC-TGTATTTATTATCGCTTTCATTGCTGCTCCTCCAGTGGATATTGATGGTATTCGTGA 332 Query 168637 ACCTGTAGCAGGTGCTCTAATGTATGGAAACAACATCATCTCAGGTGCAGTTGTTCCATC 168696 |||||| || |||||| ||||||||||| || || ||||||| || |||| | Sbjct 331 ACCTGTTTATGGATCTCTAAGTTATGGAAACAATATTATTTCAGGTGTCATTATTCCTAC 272 Query 168697 TTCAAACGCAATCGGTCTACACTTCTACCCAATTTGGGAAGCAGCTACAATCGATGAGTG 168756 ||| || || ||| | || || |||||||| ||||||||||| | | ||||| || Sbjct 271 TTCTGCAGCTATAGGTTTGCATTTTTACCCAATATGGGAAGCAGCATCCGTTGATGAATG 212 Query 168757 GTTATATAATGGTGGTCCTTACCAGTTGGTAATCTTCCACTTCCTAATCGGAATCTCTGC 168816 |||||| |||||||||||||| | | | | | |||||| || | || | || Sbjct 211 GTTATACAATGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTG 152 Query 168817 CTACATGGGTAGACAGTGGGAATTATCATACAGACTAGGTATGAGACCTTGGATCTGTGT 168876 ||||||||| | |||||||| | | | | || |||||| |||||||||| ||| Sbjct 151 TTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGACCTTGGATTGTTGT 92 Query 168877 TGCTTATTCAGCACCAGTATCTGCAGCATTTGCAGTATTCCTTGTATACCCATTTGGTCA 168936 ||| |||||||| | || | || ||| ||| || ||| | | |||||| ||||||| Sbjct 91 TGCATATTCAGCTTCTGTTGCAGCTGCAACTGCTGTTTTCTTGATCTACCCAATTGGTCA 32 Query 168937 GGGTTCTTTCTCTGATGGTATGCCTCTAGGA 168967 || || ||||||||||||||||||||| Sbjct 31 AGGAAGCTTTTCTGATGGTATGCCTCTAGGA 1 >seq250312 Length=8481 Score = 192 bits (212), Expect = 7e-44 Identities = 321/462 (69%), Gaps = 9/462 (2%) Strand=Plus/Plus Query 169007 GAGCACAACATTCTTATGCATCCCTTCCATATGGCAGGAGTAGCAGGTATGTTCGGTGGA 169066 |||||||||||||||| ||| | || || ||| ||| ||||| ||| | | || | Sbjct 1574 GAGCACAACATTCTTAGGCACTCATTTCACATGCTAGGCGTAGCTGGTGTAATTGGCAGC 1633 Query 169067 TCTCTATTCTCCGCAATGCATGGTTCACTTGTAACATCTTCTCTAATCAGAGAGACTACT 169126 || |||||| || |||| |||||| | ||||| || | | ||||| || || || Sbjct 1634 TCCCTATTCAGTGCTATGCGTGGTTCCTTGGTAACCCCTAGTTTGATCAGGGAAACCACA 1693 Query 169127 GAGGAAGAATCTCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAAACCTATAATATT 169186 || | |||| || | ||||| | ||||||||||||| ||||| || |||||| Sbjct 1694 AAGAATGAATAAGCTAATGAAGGTTATATATTCGGTCAAGAAGGAGAAAATTAGAATATT 1753 Query 169187 GTTGCAGCACATGGATACTTCGGTAGATTAATCTTCCAGTATGCAAGTTTCAACAACTCA 169246 || || || ||||| || || ||| |||| ||||||| |||| ||||||||||||||| Sbjct 1754 GTAGCCGCTCATGGTTATTTTGGTCGATTGATCTTCCGACATGCTAGTTTCAACAACTCA 1813 Query 169247 AGAAGTCTTCACTTCTTCCTAGCAGTGTTCCCAGTTGTATGTGTATGGTTAACCTCTATG 169306 | | | || ||||||||||| | | | ||| || | ||| | | | Sbjct 1814 CGTTTTTTACATTTCTTCCTAGC-----TACTTGGCCTATCTG---GTTTATTGTGT-TA 1864 Query 169307 GGTATCTGTACAATGGCATTCAACTTGAACGGATTTAACTTTAACCAATCAGTTGTAGAT 169366 |||||| | || ||||| | |||| | || || |||| || | ||||| || || || Sbjct 1865 GGTATCAGCACTATGGCTTACAACCTAAATGGTTTTAGTTTCCATCAATCTGTAGTCGAC 1924 Query 169367 GTTAACGGTAAGATCATTCCTACATGGGGTGACGTACTTAACAGAGCAAACCTTGGTATG 169426 | | || | | ||| ||| |||| ||| | ||||| | || |||||||||||| Sbjct 1925 AGTCAATGTCATGTAATTAATACTTGGGCTGATATCATTAACTGTGCTAACCTTGGTATG 1984 Query 169427 GAAGTAATGCATGAGCGTAACGCTCACAACTTCCCACTAGAC 169468 ||||| ||| |||| |||| ||||| || ||||| |||||| Sbjct 1985 GAAGTTATGTATGAATGTAATGCTCATAATTTCCCTCTAGAC 2026 >seq10884 Length=5042 Score = 158 bits (174), Expect = 1e-33 Identities = 132/162 (81%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 168944 TTCTCTGATGGTATGCCTCTAGGAATTTCTGGAACATTCAACTTCATGTTCGTATTCCAA 169003 || ||||||||||||||||||||||||||||| || |||||||||||| | |||||||| Sbjct 3789 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 3848 Query 169004 GCAGAGCACAACATTCTTATGCATCCCTTCCATATGGCAGGAGTAGCAGGTATGTTCGGT 169063 || |||||||||||||||||||| || || || ||| ||| ||||| ||| | ||||| Sbjct 3849 GCTGAGCACAACATTCTTATGCACCCATTTCACATGCTAGGCGTAGCTGGTGTATTCGGC 3908 Query 169064 GGATCTCTATTCTCCGCAATGCATGGTTCACTTGTAACATCT 169105 || || |||||| || || |||||||| ||||| ||| Sbjct 3909 GGCTCCCTATTCATTGCTATACATGGTTCCTCGGTAACCTCT 3950 >seq8631 Length=609 Score = 150 bits (166), Expect = 2e-31 Identities = 129/158 (82%), Gaps = 1/158 (1%) Strand=Plus/Minus Query 168949 TGATGGTATGCCTCTAGGAATTTCTGGAACATTCAACTTCATGTTCGTATTCCAAGCAGA 169008 ||||||||||||||||||||||||||| || |||||||||||| | |||||||| || || Sbjct 330 TGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCCGA 271 Query 169009 GCACAACATTCTTATGCATCCCTTCCATATGGCAGGAGTAGCAGGTATGTTCGGTGGATC 169068 |||||||||||||||||| || || || ||| || ||||| ||| | ||||| || || Sbjct 270 GCACAACATTCTTATGCACCCATTTCACATGCTAGACGTAGCTGGTGTATTCGGCGGCTC 211 Query 169069 TCT-ATTCTCCGCAATGCATGGTTCACTTGTAACATCT 169105 || |||| || ||||||||||| | ||||| ||| Sbjct 210 CCTAATTCAGTGCTATGCATGGTTCCTTGGTAACCTCT 173 >seq231965 Length=7494 Score = 105 bits (116), Expect = 8e-18 Identities = 136/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 168862 ACCTTGGATCTGTGTTGCTTATTCAGCACCAGTATCTGCAGCATTTGCAGTATTCCTTGT 168921 ||||||||| |||||| ||| |||| | || | | || || || ||| | | Sbjct 6581 ACCTTGGATTATTGTTGCATATCCAGCTCTTGTTGCAACTGCGACTGATGTTTTCTTGAT 6640 Query 168922 ATACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGAATTTCTGGAACATT 168981 |||||| || |||| | || ||| ||||||| ||||||||||||| ||| || || Sbjct 6641 CTACCCAATTTGTCAATGAAGCTTTTCTCATGGTATTCCTCTAGGAATTTATGGTACTTT 6700 Query 168982 CAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCATCCCTTCCATATGGC 169041 |||||||||| | ||||| | | |||||||||||||||||||| || || | ||| Sbjct 6701 CAACTTCATGATTGTATTTAAGGTTGAGCACAACATTCTTATGCACCCATTTTACATGCT 6760 Query 169042 AGGAGTAG 169049 ||| |||| Sbjct 6761 AGGCGTAG 6768 >seq254652 Length=6058 Score = 95.1 bits (104), Expect = 1e-14 Identities = 167/242 (69%), Gaps = 1/242 (0%) Strand=Plus/Plus Query 168651 CTCTAATGTATGGAAACAACATCATCTCAGGTGCAGTTGTTCCATCTTCAAACGCAATCG 168710 ||||| | ||||||||||| || || ||||||| ||| |||| |||| | || | | Sbjct 703 CTCTACTTTATGGAAACAATATTATTTCAGGTGTTGTTATTCCTACTTCTACAGCTACAG 762 Query 168711 GTCTACACTTCTACCCAATTTGGGAAGCAGCTACAATCGATGAGTGG-TTATATAATGGT 168769 || | || || |||| ||| | ||||||| | | ||||| ||| ||||| |||||| Sbjct 763 GTTTGCATTTTTACCTAATATAGGAAGCAACATTTGTTGATGAATGGTTTATACAATGGT 822 Query 168770 GGTCCTTACCAGTTGGTAATCTTCCACTTCCTAATCGGAATCTCTGCCTACATGGGTAGA 168829 |||||||| | | | | | |||||| || | || | | ||||||||| | Sbjct 823 GGTCCTTATGAACTAATTGTACTACACTTCTTACTTGGTGTAGCGTGTTACATGGGTCGC 882 Query 168830 CAGTGGGAATTATCATACAGACTAGGTATGAGACCTTGGATCTGTGTTGCTTATTCAGCA 168889 |||||||| | | | | || ||| || |||||| ||| |||||| |||||||| Sbjct 883 GAGTGGGAACTTAGTTTCCGTCTGGGTGTGCGACCTTTGATTGTTGTTGCATATTCAGCT 942 Query 168890 CC 168891 || Sbjct 943 CC 944 >seq138223 Length=10580 Score = 87.8 bits (96), Expect = 2e-12 Identities = 174/252 (69%), Gaps = 17/252 (7%) Strand=Plus/Minus Query 168812 TCTGCCTACATGGGTAGACAGTGGGAA-TTATCATACAGACTAGGTATGAGACCTTGGAT 168870 |||| |||||| || |||||||| |||| | || ||||||||||||| |||||| Sbjct 406 TCTGGTTACATGAGTCATGAGTGGGAACTTATTTTTCAT-CTAGGTATGAGACATTGGAT 348 Query 168871 CTGTGTTGCTTATTCAGCACCAGTATCTGCAGCATTTGCAGTATTCCTTGTATACCCATT 168930 | | |||| |||| ||| || || | | | || || ||| | | |||||| | Sbjct 347 TTCTTTTGCATATTTAGCTCCTGTTGCAACTGGGACTGTTGTTTTCTTAATCTACCCAAT 288 Query 168931 TGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGAATT------TCTGGAACATTCA- 168983 |||||| || | | || ||||||||||||||||||| ||| ||| ||||| Sbjct 287 TGGTCAAGGAACCATGTC---TGGTATGCCTCTAGGAATTTTGATATCTTGAA-ATTCAT 232 Query 168984 -ACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCATCCCTTCCATATGGCA 169042 | | || || |||||| | | || ||||||| |||||| || || || ||| | Sbjct 231 TATTGTATATTTGTATTCTAGGTCGAACACAACA---ATATGCACCCATTTCACATGTTA 175 Query 169043 GGAGTAGCAGGT 169054 |||||||| ||| Sbjct 174 GGAGTAGCCGGT 163 >seq176507 Length=311 Score = 86.0 bits (94), Expect = 7e-12 Identities = 61/70 (87%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 169404 TTAACAGAGCAAACCTTGGTATGGAAGTAATGCATGAGCGTAACGCTCACAACTTCCCAC 169463 ||||| | || ||||||||||||||||| |||||||| ||||| ||||| || ||||| | Sbjct 107 TTAACCGGGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAATTTCCCTC 166 Query 169464 TAGACTTAGC 169473 |||||||||| Sbjct 167 TAGACTTAGC 176 >seq463071 Length=4227 Score = 82.4 bits (90), Expect = 9e-11 Identities = 83/107 (78%), Gaps = 2/107 (2%) Strand=Plus/Minus Query 168942 CTTTCTCTGATGGTATGCCTCTAGGAATTTCTGGAACATTCAACTTCATGTTCGTATTCC 169001 ||||||| ||||||||| | ||||||||||| | || || |||||||| | ||||| | Sbjct 1539 CTTTCTC--ATGGTATGCTTTTAGGAATTTCTAGTACTTTTTACTTCATGATTGTATTAC 1482 Query 169002 AAGCAGAGCACAACATTCTTATGCATCCCTTCCATATGGCAGGAGTA 169048 | | ||||||||||||||||| || | || || ||| ||| ||| Sbjct 1481 AGGTTGAGCACAACATTCTTATACACCTGTTTCACATGCTAGGTGTA 1435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561168501938880