Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27]
463,906 sequences; 661,937,708 total letters
Query= NC_015284.1
Length=183806
Score E
Sequences producing significant alignments: (Bits) Value
seq107965 279 6e-70
seq169634 188 8e-43
seq300680 170 2e-37
seq250312 165 1e-35
seq301434 114 2e-20
seq10884 113 5e-20
seq8631 105 8e-18
seq35354 91.5 2e-13
seq33322 91.5 2e-13
seq254652 89.7 6e-13
seq36621 86.0 7e-12
>seq107965
Length=6474
Score = 279 bits (308), Expect = 6e-70
Identities = 387/542 (71%), Gaps = 0/542 (0%)
Strand=Plus/Plus
Query 172033 GCAATAGGTCTCCACTTCTACCCTATCTGGGAAGCAGCAACCGTAGATGAATGGTTGTAC 172092
|| |||||| | || || ||||| || ||||||||| || | || ||||||||||| |||
Sbjct 5921 GCTATAGGTTTGCATTTTTACCCAATATGGGAAGCAACATCTGTTGATGAATGGTTATAC 5980
Query 172093 AATGGTGGTCCTTATCAGTTGGTAATCTTCCACTTCCTTATCGGTATCTCAGCATACATG 172152
||||||||||||||| | | | | | |||||| | | ||| | | ||||||
Sbjct 5981 AATGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATG 6040
Query 172153 GGAAGACAGTGGGAACTATCATACAGATTAGGTATGAGACCATGGATATGTGTAGCATAT 172212
|| | |||||||||| | | | |||||| || | ||||| ||| ||||||
Sbjct 6041 GGTCGTGAGTGGGAACTTAGTTTTCGTCTGGGTATGCGAACTTGGATGGTTGTTGCATAT 6100
Query 172213 TCAGCACCTGTATCAGCAGCATTTGCTGTGTTCCTTGTGTATCCATTCGGTCAGGGTTCA 172272
||||| ||||| |||| || || ||| ||| | | || ||| | ||||| ||
Sbjct 6101 TCAGCTCCTGTTGCAGCTGCGAGTGTTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGC 6160
Query 172273 TTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTTATGTTCGTGTTCCAA 172332
|| |||||||||||||| ||||| || || ||||| |||||||| ||| | || |||||
Sbjct 6161 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 6220
Query 172333 GCAGAGCATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTTGGA 172392
|| ||||| |||||||| ||||| || || |||||| ||| ||||| || | | ||
Sbjct 6221 GCTGAGCACAACATTCTTATGCACCCATTTCACATGCTAGGTGTAGCTGGTGTAATCGGC 6280
Query 172393 GGATCTTTATTCTCAGCAATGCACGGTTCTTTAGTTACATCTTCTCTAATCAGAGAGACA 172452
|| || ||||| || ||||| ||||| || || || |||| | | ||||| || ||
Sbjct 6281 GGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTTGTTTGATCAGGGAAACC 6340
Query 172453 ACTGAAGCAGAATCACAGAACTACGGATACAAGTTCGGACAAGAAGAAGAAACATACAAC 172512
|| ||| |||| || | || |||| || || | |||||| ||||| || ||
Sbjct 6341 ACAGAAAATAAATCTGCTAATGAAGGTTACAGATTTGGTCTAGAAGATGAAACTTATAAT 6400
Query 172513 ATAGTAGCAGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAACAAC 172572
|| ||||| | || ||||| ||||| || | |||||||| |||||| ||||||||||
Sbjct 6401 ATCGTAGCCGTTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAAC 6460
Query 172573 TC 172574
||
Sbjct 6461 TC 6462
>seq169634
Length=720
Score = 188 bits (208), Expect = 8e-43
Identities = 307/442 (69%), Gaps = 0/442 (0%)
Strand=Plus/Minus
Query 171854 TTTATGTTGGTTGGTTCGGTGTACTCATGATCCCATGTTTGCTCACAGCAGCAGCATGCT 171913
|||| |||| ||||| ||||| | |||||||| || | || ||| | | |
Sbjct 443 TTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCTGTAT 384
Query 171914 TCATCGTTGCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTTG 171973
| || | || |||||||| || ||||| || ||||| || || || | ||||| |||
Sbjct 383 TTATTATCGCTTTCATTGCTGCTCCTCCAGTGGATATTGATGGTATTCGTGAACCTGTTT 324
Query 171974 CGGGTTCTTTCTTATATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACG 172033
|| ||| | ||||| ||||| || || || |||| || |||| | || |
Sbjct 323 ATGGATCTCTAAGTTATGGAAACAATATTATTTCAGGTGTCATTATTCCTACTTCTGCAG 264
Query 172034 CAATAGGTCTCCACTTCTACCCTATCTGGGAAGCAGCAACCGTAGATGAATGGTTGTACA 172093
| |||||| | || || ||||| || |||||||||||| |||| ||||||||||| ||||
Sbjct 263 CTATAGGTTTGCATTTTTACCCAATATGGGAAGCAGCATCCGTTGATGAATGGTTATACA 204
Query 172094 ATGGTGGTCCTTATCAGTTGGTAATCTTCCACTTCCTTATCGGTATCTCAGCATACATGG 172153
|||||||||||||| | | | | | |||||| | | ||| | | |||||||
Sbjct 203 ATGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGG 144
Query 172154 GAAGACAGTGGGAACTATCATACAGATTAGGTATGAGACCATGGATATGTGTAGCATATT 172213
| | |||||||||| | | | | |||||| |||| ||||| ||| |||||||
Sbjct 143 GTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGACCTTGGATTGTTGTTGCATATT 84
Query 172214 CAGCACCTGTATCAGCAGCATTTGCTGTGTTCCTTGTGTATCCATTCGGTCAGGGTTCAT 172273
|||| |||| |||| ||| |||||| ||| | | || ||| | ||||| || |
Sbjct 83 CAGCTTCTGTTGCAGCTGCAACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCT 24
Query 172274 TCTCTGATGGTATGCCACTAGG 172295
| |||||||||||||| |||||
Sbjct 23 TTTCTGATGGTATGCCTCTAGG 2
>seq300680
Length=3790
Score = 170 bits (188), Expect = 2e-37
Identities = 221/303 (73%), Gaps = 2/303 (1%)
Strand=Plus/Minus
Query 172273 TTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTTATGTTCGTGTTCCAA 172332
|| |||||||||||||| ||||| || || ||||| |||||||| ||| | || |||||
Sbjct 670 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 611
Query 172333 GCAGAGCATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTTGGA 172392
| ||||| |||||||| ||||| || || |||||| | | ||||| || | | |
Sbjct 610 GTTGAGCACAACATTCTTATGCACCCATTTCACATGCTAAGCGTAGCTGGTGTACTCGTC 551
Query 172393 GGATCTTTATTCTCAGCAATGCACGGTTCTTTAGTTACATCTTCTCTAATCAGAGAGACA 172452
| || |||| || ||||| ||||| || || || ||| | ||||||| || ||
Sbjct 550 AGCTCCCTATTTAATGCTATGCATGGTTCCTTGGTAACCTCTAGTTTAATCAG-GAAACC 492
Query 172453 ACTGAAGCAGAATCACAGAACTACGGATACAAGTTCGGACAAGAAGAAG-AAACATACAA 172511
| ||| |||| || | || ||||| ||||| |||||||||| |||| || ||
Sbjct 491 AGAGAAAATGAATTTGCTAATGAAGGTTACAAATTCGGTCAAGAAGAAGAAAACTTATAA 432
Query 172512 CATAGTAGCAGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAACAA 172571
|| ||||| || || ||||| ||||| || | |||||||||||||| |||||||||
Sbjct 431 TATCGTAGCCGCTCATGGTTATTTTGGCCGATTGGTCTTCCAGTATGCTAGTTTCAACAA 372
Query 172572 CTC 172574
|||
Sbjct 371 CTC 369
>seq250312
Length=8481
Score = 165 bits (182), Expect = 1e-35
Identities = 320/467 (69%), Gaps = 19/467 (4%)
Strand=Plus/Plus
Query 172336 GAGCATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTTGGAGGA 172395
||||| |||||||| | ||| | || |||||| ||| ||||| || | |||| |
Sbjct 1574 GAGCACAACATTCTTAGGCACTCATTTCACATGCTAGGCGTAGCTGGTGTAATTGGCAGC 1633
Query 172396 TCTTTATTCTCAGCAATGCACGGTTCTTTAGTTACATCTTCTCTAATCAGAGAGACAACT 172455
|| ||||| || |||| ||||| || || || || | | ||||| || || ||
Sbjct 1634 TCCCTATTCAGTGCTATGCGTGGTTCCTTGGTAACCCCTAGTTTGATCAGGGAAACCACA 1693
Query 172456 GAAGCA-GAATCACAGAACTACGGATACAAGTTCGGACAAGAAGAAGAAACATACAACAT 172514
||| | |||| | || | || || | ||||| ||||||| ||||| || || ||
Sbjct 1694 -AAGAATGAATAAGCTAATGAAGGTTATATATTCGGTCAAGAAGGAGAAAATTAGAATAT 1752
Query 172515 AGTAGCAGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAACAACTC 172574
||||| || || ||||| |||||||| | ||||||| ||||| ||||||||||||
Sbjct 1753 TGTAGCCGCTCATGGTTATTTTGGTCGATTGATCTTCCGACATGCTAGTTTCAACAACTC 1812
Query 172575 AAGAAGTCTTCACTTCTTCCTAGC-AGTTTTCC---CTGTTGTATGTGTATGGTTAACCT 172630
| | | | || ||||||||||| | || || ||| | ||| ||| ||||
Sbjct 1813 ACGTTTTTTACATTTCTTCCTAGCTACTTGGCCTATCTGGTTTAT-TGT---GTTA---- 1864
Query 172631 CTATGGGTATCTGTACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCAGTTG 172690
|||||| | || ||||| | |||||| || ||||| | ||| | ||||| || |
Sbjct 1865 -----GGTATCAGCACTATGGCTTACAACCTAAATGGTTTTAGTTTCCATCAATCTGTAG 1919
Query 172691 TAGATGCTAACGGTAAGATTGTTCCTACATGGGGTGACGTTCTTAACAGAGCAAACCTAG 172750
| || | | || | | || ||| |||| ||| | ||||| | || ||||| |
Sbjct 1920 TCGACAGTCAATGTCATGTAATTAATACTTGGGCTGATATCATTAACTGTGCTAACCTTG 1979
Query 172751 GTATGGAAGTTATGCATGAAAGAAATGCACACAACTTCCCATTAGAC 172797
|||||||||||||| ||||| | ||||| || || ||||| |||||
Sbjct 1980 GTATGGAAGTTATGTATGAATGTAATGCTCATAATTTCCCTCTAGAC 2026
>seq301434
Length=6657
Score = 114 bits (126), Expect = 2e-20
Identities = 171/241 (71%), Gaps = 4/241 (2%)
Strand=Plus/Plus
Query 158407 GGTGAGTGGGGATTTGACATTGCTGTAGGTAGTATGCAAAGGTTTGGTATTCCTATGGGA 158466
||||||| ||| |||| |||| || ||| ||||| ||||| |||| |||||
Sbjct 3156 GGTGAGTTTGGAGTTGATATTGTGGTGGGTTCGGCTCAAAGATTTGGAGTTCCGATGGGG 3215
Query 158467 TACGGAGGTCCTCATGCTGCATTCTTTGCAACAACAGACAAGTATAAGAGAAAGATACCT 158526
|| |||||||||||||| || || ||||||| || | |||| ||||| | ||| ||
Sbjct 3216 TATGGAGGTCCTCATGCGGCGTTTCTTGCAACGTCACAAGAGTACAAGAGGATGATGCCC 3275
Query 158527 GGCAGAATTGTAG--GTCAGTCAGTAGATAGCGAAGGTAATAAAGCATACAGATTAGCAC 158584
|| |||||| | | || ||| || ||| || || || | | | ||
Sbjct 3276 GGAAGAATTATTGGTGTTAGT--GTTGATTCTTCGGGCAAGCCTGCTTTACGTATGGCGA 3333
Query 158585 TACAGACTAGAGAGCAGCATATCAGAAGAGACAAAGCAACCAGTAACATCTGCACAGCAC 158644
| ||||| |||||||| |||||||| ||||||||||| ||||| ||||| |||||||| |
Sbjct 3334 TGCAGACAAGAGAGCAACATATCAGGAGAGACAAAGCTACCAGCAACATTTGCACAGCTC 3393
Query 158645 A 158645
|
Sbjct 3394 A 3394
>seq10884
Length=5042
Score = 113 bits (124), Expect = 5e-20
Identities = 122/162 (75%), Gaps = 0/162 (0%)
Strand=Plus/Plus
Query 172273 TTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTTATGTTCGTGTTCCAA 172332
|| |||||||||||||| ||||| || || ||||| |||||||| ||| | || |||||
Sbjct 3789 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 3848
Query 172333 GCAGAGCATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTTGGA 172392
|| ||||| |||||||| ||||| || || |||||| ||| ||||| || | || ||
Sbjct 3849 GCTGAGCACAACATTCTTATGCACCCATTTCACATGCTAGGCGTAGCTGGTGTATTCGGC 3908
Query 172393 GGATCTTTATTCTCAGCAATGCACGGTTCTTTAGTTACATCT 172434
|| || ||||| || || || ||||| | || || |||
Sbjct 3909 GGCTCCCTATTCATTGCTATACATGGTTCCTCGGTAACCTCT 3950
>seq8631
Length=609
Score = 105 bits (116), Expect = 8e-18
Identities = 119/158 (75%), Gaps = 1/158 (1%)
Strand=Plus/Minus
Query 172278 TGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTTATGTTCGTGTTCCAAGCAGA 172337
|||||||||||| ||||| || || ||||| |||||||| ||| | || ||||| || ||
Sbjct 330 TGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCCGA 271
Query 172338 GCATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTTGGAGGAT- 172396
||| |||||||| ||||| || || |||||| || ||||| || | || || || |
Sbjct 270 GCACAACATTCTTATGCACCCATTTCACATGCTAGACGTAGCTGGTGTATTCGGCGGCTC 211
Query 172397 CTTTATTCTCAGCAATGCACGGTTCTTTAGTTACATCT 172434
| | |||| || ||||| ||||| || || || |||
Sbjct 210 CCTAATTCAGTGCTATGCATGGTTCCTTGGTAACCTCT 173
>seq35354
Length=12468
Score = 91.5 bits (100), Expect = 2e-13
Identities = 65/75 (87%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 172033 GCAATAGGTCTCCACTTCTACCCTATCTGGGAAGCAGCAACCGTAGATGAATGGTTGTAC 172092
|| |||||| | || || ||||| || |||||||||||| |||| ||||||||||| |||
Sbjct 10537 GCTATAGGTTTGCATTTTTACCCAATATGGGAAGCAGCATCCGTTGATGAATGGTTATAC 10596
Query 172093 AATGGTGGTCCTTAT 172107
|||||||||||||||
Sbjct 10597 AATGGTGGTCCTTAT 10611
>seq33322
Length=15627
Score = 91.5 bits (100), Expect = 2e-13
Identities = 97/128 (76%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 173434 GCAGCAATCTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTACATTGAATCCA 173493
||||| || ||||| | |||| | || | ||||| || || ||| |||||||| |||
Sbjct 6657 GCAGCTATATTTCGATTTATCCTCTTTTTTCAAGGATTTCATAACTGGACATTGAACCCA 6716
Query 173494 TTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTACTATGTGCCATTCATGGT 173553
||||| |||||||| ||||| || || | |||| || || ||||| || |||||||||
Sbjct 6717 TTTCATATGATGGGAGTTGCCGGTGTATTGGGTGCTGCTTTGCTATGCGCTATTCATGGT 6776
Query 173554 GCAACAGT 173561
|| || ||
Sbjct 6777 GCTACCGT 6784
>seq254652
Length=6058
Score = 89.7 bits (98), Expect = 6e-13
Identities = 168/246 (68%), Gaps = 1/246 (0%)
Strand=Plus/Plus
Query 171988 TATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCAATAGGTCTCCAC 172047
||||| ||||| || || || |||| ||| |||| | || | || | |||| | ||
Sbjct 711 TATGGAAACAATATTATTTCAGGTGTTGTTATTCCTACTTCTACAGCTACAGGTTTGCAT 770
Query 172048 TTCTACCCTATCTGGGAAGCAGCAACCGTAGATGAATGG-TTGTACAATGGTGGTCCTTA 172106
|| |||| || | ||||||| || || ||||||||| || |||||||||||||||||
Sbjct 771 TTTTACCTAATATAGGAAGCAACATTTGTTGATGAATGGTTTATACAATGGTGGTCCTTA 830
Query 172107 TCAGTTGGTAATCTTCCACTTCCTTATCGGTATCTCAGCATACATGGGAAGACAGTGGGA 172166
| | | | | | |||||| | | ||| | | |||||||| | |||||||
Sbjct 831 TGAACTAATTGTACTACACTTCTTACTTGGTGTAGCGTGTTACATGGGTCGCGAGTGGGA 890
Query 172167 ACTATCATACAGATTAGGTATGAGACCATGGATATGTGTAGCATATTCAGCACCTGTATC 172226
||| | | | | ||| || |||| | ||| ||| ||||||||||| ||| | |
Sbjct 891 ACTTAGTTTCCGTCTGGGTGTGCGACCTTTGATTGTTGTTGCATATTCAGCTCCTATTAC 950
Query 172227 AGCAGC 172232
||| ||
Sbjct 951 AGCTGC 956
>seq36621
Length=13842
Score = 86.0 bits (94), Expect = 7e-12
Identities = 205/309 (66%), Gaps = 1/309 (0%)
Strand=Plus/Minus
Query 172498 GAAGAAACATACAACATAGTAGCAGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTAT 172557
|||||||| || || || ||| || || ||||| ||||| | | |||||| | |||
Sbjct 7968 GAAGAAACTTATAATATCGTATATGCTCATGGTTA-TTTGGCTGATTGATCTTCTAATAT 7910
Query 172558 GCTTCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGCAGTTTTCCCTGTTGTATGT 172617
||| ||||||| |||| | | | || || ||||| | || |||||| | ||
Sbjct 7909 GCTAGTTTCAACGACTCTCATTTTATATATTTTTTTCTAGCTGCTTGGCCTGTTTTTGGT 7850
Query 172618 GTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACCTTAACGGTTTCAACTTC 172677
||||||| || | |||||| | | ||||| |||||||| || |||| ||
Sbjct 7849 ATATGGTTCACTGCGTTGGGTACTAGCATTATGGCTTTCAACCTAAATGGTTGAAATCGA 7790
Query 172678 AACCAATCAGTTGTAGATGCTAACGGTAAGATTGTTCCTACATGGGGTGACGTTCTTAAC 172737
||||||| || || ||| | || | | | ||| || ||||| | ||||
Sbjct 7789 AACCAATTGGTAGTTGATAGTCACAGCCGTGTAATGAATACTTGAGGTGATATCAGTAAC 7730
Query 172738 AGAGCAAACCTAGGTATGGAAGTTATGCATGAAAGAAATGCACACAACTTCCCATTAGAC 172797
|| ||||| | |||| | |||||||||||| | ||||| || || | ||| |||||
Sbjct 7729 CATGCTAACCTTGTTATGAATGTTATGCATGAACGTAATGCTCATAATTCCCCTCTAGAC 7670
Query 172798 CTTGCTTCT 172806
| ||| ||
Sbjct 7669 TTGGCTGCT 7661
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 584641194000160
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