Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq107965 279 6e-70 seq169634 188 8e-43 seq300680 170 2e-37 seq250312 165 1e-35 seq301434 114 2e-20 seq10884 113 5e-20 seq8631 105 8e-18 seq35354 91.5 2e-13 seq33322 91.5 2e-13 seq254652 89.7 6e-13 seq36621 86.0 7e-12 >seq107965 Length=6474 Score = 279 bits (308), Expect = 6e-70 Identities = 387/542 (71%), Gaps = 0/542 (0%) Strand=Plus/Plus Query 172033 GCAATAGGTCTCCACTTCTACCCTATCTGGGAAGCAGCAACCGTAGATGAATGGTTGTAC 172092 || |||||| | || || ||||| || ||||||||| || | || ||||||||||| ||| Sbjct 5921 GCTATAGGTTTGCATTTTTACCCAATATGGGAAGCAACATCTGTTGATGAATGGTTATAC 5980 Query 172093 AATGGTGGTCCTTATCAGTTGGTAATCTTCCACTTCCTTATCGGTATCTCAGCATACATG 172152 ||||||||||||||| | | | | | |||||| | | ||| | | |||||| Sbjct 5981 AATGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATG 6040 Query 172153 GGAAGACAGTGGGAACTATCATACAGATTAGGTATGAGACCATGGATATGTGTAGCATAT 172212 || | |||||||||| | | | |||||| || | ||||| ||| |||||| Sbjct 6041 GGTCGTGAGTGGGAACTTAGTTTTCGTCTGGGTATGCGAACTTGGATGGTTGTTGCATAT 6100 Query 172213 TCAGCACCTGTATCAGCAGCATTTGCTGTGTTCCTTGTGTATCCATTCGGTCAGGGTTCA 172272 ||||| ||||| |||| || || ||| ||| | | || ||| | ||||| || Sbjct 6101 TCAGCTCCTGTTGCAGCTGCGAGTGTTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGC 6160 Query 172273 TTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTTATGTTCGTGTTCCAA 172332 || |||||||||||||| ||||| || || ||||| |||||||| ||| | || ||||| Sbjct 6161 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 6220 Query 172333 GCAGAGCATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTTGGA 172392 || ||||| |||||||| ||||| || || |||||| ||| ||||| || | | || Sbjct 6221 GCTGAGCACAACATTCTTATGCACCCATTTCACATGCTAGGTGTAGCTGGTGTAATCGGC 6280 Query 172393 GGATCTTTATTCTCAGCAATGCACGGTTCTTTAGTTACATCTTCTCTAATCAGAGAGACA 172452 || || ||||| || ||||| ||||| || || || |||| | | ||||| || || Sbjct 6281 GGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTTGTTTGATCAGGGAAACC 6340 Query 172453 ACTGAAGCAGAATCACAGAACTACGGATACAAGTTCGGACAAGAAGAAGAAACATACAAC 172512 || ||| |||| || | || |||| || || | |||||| ||||| || || Sbjct 6341 ACAGAAAATAAATCTGCTAATGAAGGTTACAGATTTGGTCTAGAAGATGAAACTTATAAT 6400 Query 172513 ATAGTAGCAGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAACAAC 172572 || ||||| | || ||||| ||||| || | |||||||| |||||| |||||||||| Sbjct 6401 ATCGTAGCCGTTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAAC 6460 Query 172573 TC 172574 || Sbjct 6461 TC 6462 >seq169634 Length=720 Score = 188 bits (208), Expect = 8e-43 Identities = 307/442 (69%), Gaps = 0/442 (0%) Strand=Plus/Minus Query 171854 TTTATGTTGGTTGGTTCGGTGTACTCATGATCCCATGTTTGCTCACAGCAGCAGCATGCT 171913 |||| |||| ||||| ||||| | |||||||| || | || ||| | | | Sbjct 443 TTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCTGTAT 384 Query 171914 TCATCGTTGCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTTG 171973 | || | || |||||||| || ||||| || ||||| || || || | ||||| ||| Sbjct 383 TTATTATCGCTTTCATTGCTGCTCCTCCAGTGGATATTGATGGTATTCGTGAACCTGTTT 324 Query 171974 CGGGTTCTTTCTTATATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACG 172033 || ||| | ||||| ||||| || || || |||| || |||| | || | Sbjct 323 ATGGATCTCTAAGTTATGGAAACAATATTATTTCAGGTGTCATTATTCCTACTTCTGCAG 264 Query 172034 CAATAGGTCTCCACTTCTACCCTATCTGGGAAGCAGCAACCGTAGATGAATGGTTGTACA 172093 | |||||| | || || ||||| || |||||||||||| |||| ||||||||||| |||| Sbjct 263 CTATAGGTTTGCATTTTTACCCAATATGGGAAGCAGCATCCGTTGATGAATGGTTATACA 204 Query 172094 ATGGTGGTCCTTATCAGTTGGTAATCTTCCACTTCCTTATCGGTATCTCAGCATACATGG 172153 |||||||||||||| | | | | | |||||| | | ||| | | ||||||| Sbjct 203 ATGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGG 144 Query 172154 GAAGACAGTGGGAACTATCATACAGATTAGGTATGAGACCATGGATATGTGTAGCATATT 172213 | | |||||||||| | | | | |||||| |||| ||||| ||| ||||||| Sbjct 143 GTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGACCTTGGATTGTTGTTGCATATT 84 Query 172214 CAGCACCTGTATCAGCAGCATTTGCTGTGTTCCTTGTGTATCCATTCGGTCAGGGTTCAT 172273 |||| |||| |||| ||| |||||| ||| | | || ||| | ||||| || | Sbjct 83 CAGCTTCTGTTGCAGCTGCAACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCT 24 Query 172274 TCTCTGATGGTATGCCACTAGG 172295 | |||||||||||||| ||||| Sbjct 23 TTTCTGATGGTATGCCTCTAGG 2 >seq300680 Length=3790 Score = 170 bits (188), Expect = 2e-37 Identities = 221/303 (73%), Gaps = 2/303 (1%) Strand=Plus/Minus Query 172273 TTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTTATGTTCGTGTTCCAA 172332 || |||||||||||||| ||||| || || ||||| |||||||| ||| | || ||||| Sbjct 670 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 611 Query 172333 GCAGAGCATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTTGGA 172392 | ||||| |||||||| ||||| || || |||||| | | ||||| || | | | Sbjct 610 GTTGAGCACAACATTCTTATGCACCCATTTCACATGCTAAGCGTAGCTGGTGTACTCGTC 551 Query 172393 GGATCTTTATTCTCAGCAATGCACGGTTCTTTAGTTACATCTTCTCTAATCAGAGAGACA 172452 | || |||| || ||||| ||||| || || || ||| | ||||||| || || Sbjct 550 AGCTCCCTATTTAATGCTATGCATGGTTCCTTGGTAACCTCTAGTTTAATCAG-GAAACC 492 Query 172453 ACTGAAGCAGAATCACAGAACTACGGATACAAGTTCGGACAAGAAGAAG-AAACATACAA 172511 | ||| |||| || | || ||||| ||||| |||||||||| |||| || || Sbjct 491 AGAGAAAATGAATTTGCTAATGAAGGTTACAAATTCGGTCAAGAAGAAGAAAACTTATAA 432 Query 172512 CATAGTAGCAGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAACAA 172571 || ||||| || || ||||| ||||| || | |||||||||||||| ||||||||| Sbjct 431 TATCGTAGCCGCTCATGGTTATTTTGGCCGATTGGTCTTCCAGTATGCTAGTTTCAACAA 372 Query 172572 CTC 172574 ||| Sbjct 371 CTC 369 >seq250312 Length=8481 Score = 165 bits (182), Expect = 1e-35 Identities = 320/467 (69%), Gaps = 19/467 (4%) Strand=Plus/Plus Query 172336 GAGCATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTTGGAGGA 172395 ||||| |||||||| | ||| | || |||||| ||| ||||| || | |||| | Sbjct 1574 GAGCACAACATTCTTAGGCACTCATTTCACATGCTAGGCGTAGCTGGTGTAATTGGCAGC 1633 Query 172396 TCTTTATTCTCAGCAATGCACGGTTCTTTAGTTACATCTTCTCTAATCAGAGAGACAACT 172455 || ||||| || |||| ||||| || || || || | | ||||| || || || Sbjct 1634 TCCCTATTCAGTGCTATGCGTGGTTCCTTGGTAACCCCTAGTTTGATCAGGGAAACCACA 1693 Query 172456 GAAGCA-GAATCACAGAACTACGGATACAAGTTCGGACAAGAAGAAGAAACATACAACAT 172514 ||| | |||| | || | || || | ||||| ||||||| ||||| || || || Sbjct 1694 -AAGAATGAATAAGCTAATGAAGGTTATATATTCGGTCAAGAAGGAGAAAATTAGAATAT 1752 Query 172515 AGTAGCAGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAACAACTC 172574 ||||| || || ||||| |||||||| | ||||||| ||||| |||||||||||| Sbjct 1753 TGTAGCCGCTCATGGTTATTTTGGTCGATTGATCTTCCGACATGCTAGTTTCAACAACTC 1812 Query 172575 AAGAAGTCTTCACTTCTTCCTAGC-AGTTTTCC---CTGTTGTATGTGTATGGTTAACCT 172630 | | | | || ||||||||||| | || || ||| | ||| ||| |||| Sbjct 1813 ACGTTTTTTACATTTCTTCCTAGCTACTTGGCCTATCTGGTTTAT-TGT---GTTA---- 1864 Query 172631 CTATGGGTATCTGTACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCAGTTG 172690 |||||| | || ||||| | |||||| || ||||| | ||| | ||||| || | Sbjct 1865 -----GGTATCAGCACTATGGCTTACAACCTAAATGGTTTTAGTTTCCATCAATCTGTAG 1919 Query 172691 TAGATGCTAACGGTAAGATTGTTCCTACATGGGGTGACGTTCTTAACAGAGCAAACCTAG 172750 | || | | || | | || ||| |||| ||| | ||||| | || ||||| | Sbjct 1920 TCGACAGTCAATGTCATGTAATTAATACTTGGGCTGATATCATTAACTGTGCTAACCTTG 1979 Query 172751 GTATGGAAGTTATGCATGAAAGAAATGCACACAACTTCCCATTAGAC 172797 |||||||||||||| ||||| | ||||| || || ||||| ||||| Sbjct 1980 GTATGGAAGTTATGTATGAATGTAATGCTCATAATTTCCCTCTAGAC 2026 >seq301434 Length=6657 Score = 114 bits (126), Expect = 2e-20 Identities = 171/241 (71%), Gaps = 4/241 (2%) Strand=Plus/Plus Query 158407 GGTGAGTGGGGATTTGACATTGCTGTAGGTAGTATGCAAAGGTTTGGTATTCCTATGGGA 158466 ||||||| ||| |||| |||| || ||| ||||| ||||| |||| ||||| Sbjct 3156 GGTGAGTTTGGAGTTGATATTGTGGTGGGTTCGGCTCAAAGATTTGGAGTTCCGATGGGG 3215 Query 158467 TACGGAGGTCCTCATGCTGCATTCTTTGCAACAACAGACAAGTATAAGAGAAAGATACCT 158526 || |||||||||||||| || || ||||||| || | |||| ||||| | ||| || Sbjct 3216 TATGGAGGTCCTCATGCGGCGTTTCTTGCAACGTCACAAGAGTACAAGAGGATGATGCCC 3275 Query 158527 GGCAGAATTGTAG--GTCAGTCAGTAGATAGCGAAGGTAATAAAGCATACAGATTAGCAC 158584 || |||||| | | || ||| || ||| || || || | | | || Sbjct 3276 GGAAGAATTATTGGTGTTAGT--GTTGATTCTTCGGGCAAGCCTGCTTTACGTATGGCGA 3333 Query 158585 TACAGACTAGAGAGCAGCATATCAGAAGAGACAAAGCAACCAGTAACATCTGCACAGCAC 158644 | ||||| |||||||| |||||||| ||||||||||| ||||| ||||| |||||||| | Sbjct 3334 TGCAGACAAGAGAGCAACATATCAGGAGAGACAAAGCTACCAGCAACATTTGCACAGCTC 3393 Query 158645 A 158645 | Sbjct 3394 A 3394 >seq10884 Length=5042 Score = 113 bits (124), Expect = 5e-20 Identities = 122/162 (75%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 172273 TTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTTATGTTCGTGTTCCAA 172332 || |||||||||||||| ||||| || || ||||| |||||||| ||| | || ||||| Sbjct 3789 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 3848 Query 172333 GCAGAGCATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTTGGA 172392 || ||||| |||||||| ||||| || || |||||| ||| ||||| || | || || Sbjct 3849 GCTGAGCACAACATTCTTATGCACCCATTTCACATGCTAGGCGTAGCTGGTGTATTCGGC 3908 Query 172393 GGATCTTTATTCTCAGCAATGCACGGTTCTTTAGTTACATCT 172434 || || ||||| || || || ||||| | || || ||| Sbjct 3909 GGCTCCCTATTCATTGCTATACATGGTTCCTCGGTAACCTCT 3950 >seq8631 Length=609 Score = 105 bits (116), Expect = 8e-18 Identities = 119/158 (75%), Gaps = 1/158 (1%) Strand=Plus/Minus Query 172278 TGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTTATGTTCGTGTTCCAAGCAGA 172337 |||||||||||| ||||| || || ||||| |||||||| ||| | || ||||| || || Sbjct 330 TGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCCGA 271 Query 172338 GCATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTTGGAGGAT- 172396 ||| |||||||| ||||| || || |||||| || ||||| || | || || || | Sbjct 270 GCACAACATTCTTATGCACCCATTTCACATGCTAGACGTAGCTGGTGTATTCGGCGGCTC 211 Query 172397 CTTTATTCTCAGCAATGCACGGTTCTTTAGTTACATCT 172434 | | |||| || ||||| ||||| || || || ||| Sbjct 210 CCTAATTCAGTGCTATGCATGGTTCCTTGGTAACCTCT 173 >seq35354 Length=12468 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 172033 GCAATAGGTCTCCACTTCTACCCTATCTGGGAAGCAGCAACCGTAGATGAATGGTTGTAC 172092 || |||||| | || || ||||| || |||||||||||| |||| ||||||||||| ||| Sbjct 10537 GCTATAGGTTTGCATTTTTACCCAATATGGGAAGCAGCATCCGTTGATGAATGGTTATAC 10596 Query 172093 AATGGTGGTCCTTAT 172107 ||||||||||||||| Sbjct 10597 AATGGTGGTCCTTAT 10611 >seq33322 Length=15627 Score = 91.5 bits (100), Expect = 2e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 173434 GCAGCAATCTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTACATTGAATCCA 173493 ||||| || ||||| | |||| | || | ||||| || || ||| |||||||| ||| Sbjct 6657 GCAGCTATATTTCGATTTATCCTCTTTTTTCAAGGATTTCATAACTGGACATTGAACCCA 6716 Query 173494 TTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTACTATGTGCCATTCATGGT 173553 ||||| |||||||| ||||| || || | |||| || || ||||| || ||||||||| Sbjct 6717 TTTCATATGATGGGAGTTGCCGGTGTATTGGGTGCTGCTTTGCTATGCGCTATTCATGGT 6776 Query 173554 GCAACAGT 173561 || || || Sbjct 6777 GCTACCGT 6784 >seq254652 Length=6058 Score = 89.7 bits (98), Expect = 6e-13 Identities = 168/246 (68%), Gaps = 1/246 (0%) Strand=Plus/Plus Query 171988 TATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCAATAGGTCTCCAC 172047 ||||| ||||| || || || |||| ||| |||| | || | || | |||| | || Sbjct 711 TATGGAAACAATATTATTTCAGGTGTTGTTATTCCTACTTCTACAGCTACAGGTTTGCAT 770 Query 172048 TTCTACCCTATCTGGGAAGCAGCAACCGTAGATGAATGG-TTGTACAATGGTGGTCCTTA 172106 || |||| || | ||||||| || || ||||||||| || ||||||||||||||||| Sbjct 771 TTTTACCTAATATAGGAAGCAACATTTGTTGATGAATGGTTTATACAATGGTGGTCCTTA 830 Query 172107 TCAGTTGGTAATCTTCCACTTCCTTATCGGTATCTCAGCATACATGGGAAGACAGTGGGA 172166 | | | | | | |||||| | | ||| | | |||||||| | ||||||| Sbjct 831 TGAACTAATTGTACTACACTTCTTACTTGGTGTAGCGTGTTACATGGGTCGCGAGTGGGA 890 Query 172167 ACTATCATACAGATTAGGTATGAGACCATGGATATGTGTAGCATATTCAGCACCTGTATC 172226 ||| | | | | ||| || |||| | ||| ||| ||||||||||| ||| | | Sbjct 891 ACTTAGTTTCCGTCTGGGTGTGCGACCTTTGATTGTTGTTGCATATTCAGCTCCTATTAC 950 Query 172227 AGCAGC 172232 ||| || Sbjct 951 AGCTGC 956 >seq36621 Length=13842 Score = 86.0 bits (94), Expect = 7e-12 Identities = 205/309 (66%), Gaps = 1/309 (0%) Strand=Plus/Minus Query 172498 GAAGAAACATACAACATAGTAGCAGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTAT 172557 |||||||| || || || ||| || || ||||| ||||| | | |||||| | ||| Sbjct 7968 GAAGAAACTTATAATATCGTATATGCTCATGGTTA-TTTGGCTGATTGATCTTCTAATAT 7910 Query 172558 GCTTCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGCAGTTTTCCCTGTTGTATGT 172617 ||| ||||||| |||| | | | || || ||||| | || |||||| | || Sbjct 7909 GCTAGTTTCAACGACTCTCATTTTATATATTTTTTTCTAGCTGCTTGGCCTGTTTTTGGT 7850 Query 172618 GTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACCTTAACGGTTTCAACTTC 172677 ||||||| || | |||||| | | ||||| |||||||| || |||| || Sbjct 7849 ATATGGTTCACTGCGTTGGGTACTAGCATTATGGCTTTCAACCTAAATGGTTGAAATCGA 7790 Query 172678 AACCAATCAGTTGTAGATGCTAACGGTAAGATTGTTCCTACATGGGGTGACGTTCTTAAC 172737 ||||||| || || ||| | || | | | ||| || ||||| | |||| Sbjct 7789 AACCAATTGGTAGTTGATAGTCACAGCCGTGTAATGAATACTTGAGGTGATATCAGTAAC 7730 Query 172738 AGAGCAAACCTAGGTATGGAAGTTATGCATGAAAGAAATGCACACAACTTCCCATTAGAC 172797 || ||||| | |||| | |||||||||||| | ||||| || || | ||| ||||| Sbjct 7729 CATGCTAACCTTGTTATGAATGTTATGCATGAACGTAATGCTCATAATTCCCCTCTAGAC 7670 Query 172798 CTTGCTTCT 172806 | ||| || Sbjct 7669 TTGGCTGCT 7661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 584641194000160