Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27]
463,906 sequences; 661,937,708 total letters
Query= NC_015285.1
Length=174285
Score E
Sequences producing significant alignments: (Bits) Value
seq107965 300 2e-76
seq300680 172 6e-38
seq250312 172 6e-38
seq33322 120 3e-22
seq10884 116 4e-21
seq8631 116 4e-21
seq58055 114 1e-20
seq264332 104 3e-17
seq292072 93.3 5e-14
seq449122 82.4 8e-11
>seq107965
Length=6474
Score = 300 bits (332), Expect = 2e-76
Identities = 426/599 (71%), Gaps = 0/599 (0%)
Strand=Plus/Plus
Query 162553 TATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCAC 162612
||||| ||||| || || | ||| | || |||| ||| || || ||| | ||
Sbjct 5876 TATGGAAACAATATTATTTTAGGTACCATTATTCCTATTTCTGCAGCTATAGGTTTGCAT 5935
Query 162613 TTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTC 162672
|| || || || |||||||| |||| ||||||| ||| | || || ||||||||||
Sbjct 5936 TTTTACCCAATATGGGAAGCAACATCTGTTGATGAATGGTTATACAATGGTGGTCCTTAT 5995
Query 162673 CAACTCGTAGTATTCCACTTCCTGATCGGCATCTATGCCTACATGGGACGTGAATGGGAA 162732
|||| | || | |||||| | | || | | |||||||| ||||| ||||||
Sbjct 5996 GAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAA 6055
Query 162733 CTCTCTTACCGTCTTGGTATGCGTCCATGGATCTGCGTAGCATACTCTGCACCTGTTGCA 162792
|| || ||||| |||||||| | ||||| || ||||| || || |||||||||
Sbjct 6056 CTTAGTTTTCGTCTGGGTATGCGAACTTGGATGGTTGTTGCATATTCAGCTCCTGTTGCA 6115
Query 162793 GCAGCATCGGCAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATG 162852
|| || | || ||| || |||| || | |||||||| || ||||| | |||
Sbjct 6116 GCTGCGAGTGTTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATG 6175
Query 162853 CCCTTGGGTATCAGTGGTACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATT 162912
|| | || || |||||| ||||||| |||| |||| ||||| || ||||||||||||
Sbjct 6176 CCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATT 6235
Query 162913 CTGATGCATCCCTTCCACATGTTGGGTGTCGCAGGTGTCTTCGGTGGTTCACTGTTCAGT 162972
|| ||||| || || |||||| | ||||| || ||||| |||| || || || ||||||
Sbjct 6236 CTTATGCACCCATTTCACATGCTAGGTGTAGCTGGTGTAATCGGCGGCTCCCTATTCAGT 6295
Query 162973 GCAATGCACGGTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAAACTGAGTCA 163032
|| ||||| ||||| ||||| || |||| | || | || || || |||| | | ||
Sbjct 6296 GCTATGCATGGTTCCTTGGTAACCTCTTGTTTGATCAGGGAAACCACAGAAAATAAATCT 6355
Query 163033 CAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACATACAACATCGTCGCAGCCCAT 163092
|| | ||||||| || |||| |||||| || || || || ||||| || | |||
Sbjct 6356 GCTAATGAAGGTTACAGATTTGGTCTAGAAGATGAAACTTATAATATCGTAGCCGTTCAT 6415
Query 163093 GGTTACTTCGGTCGTTTGATCTTCCAATATGCATCATTCAACAACTCCCGTTCCTTGCA 163151
||||| || || || ||||||||||||||||| ||||||||||| ||||| || ||
Sbjct 6416 GGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACA 6474
>seq300680
Length=3790
Score = 172 bits (190), Expect = 6e-38
Identities = 231/319 (72%), Gaps = 2/319 (1%)
Strand=Plus/Minus
Query 162838 TTCTCTGACGCAATGCCCTTGGGTATCAGTGGTACATTCAACTACATGCTTGTCTTCCAA 162897
|| ||||| | ||||| | || || |||||| ||||||| |||| |||| |||||
Sbjct 670 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 611
Query 162898 GCAGAGCACAACATTCTGATGCATCCCTTCCACATGTTGGGTGTCGCAGGTGTCTTCGGT 162957
| |||||||||||||| ||||| || || |||||| | | || || ||||| |||
Sbjct 610 GTTGAGCACAACATTCTTATGCACCCATTTCACATGCTAAGCGTAGCTGGTGTACTCGTC 551
Query 162958 GGTTCACTGTTCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTCCGTGAGACG 163017
| || || || | ||| ||||| ||||| ||||| || ||| | || | || ||
Sbjct 550 AGCTCCCTATTTAATGCTATGCATGGTTCCTTGGTAACCTCTAGTTTAATCAG-GAAACC 492
Query 163018 ACTGAAACTGAGTCACAGAACTATGGTTACAAGTTCGGTCAAGAAGAAG-AGACATACAA 163076
| |||| ||| | || | |||||||| |||||||||||||||| | || || ||
Sbjct 491 AGAGAAAATGAATTTGCTAATGAAGGTTACAAATTCGGTCAAGAAGAAGAAAACTTATAA 432
Query 163077 CATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCATTCAACAA 163136
||||| || || |||||||| || || || ||| ||||||| ||||| ||||||||
Sbjct 431 TATCGTAGCCGCTCATGGTTATTTTGGCCGATTGGTCTTCCAGTATGCTAGTTTCAACAA 372
Query 163137 CTCCCGTTCCTTGCACTTC 163155
||| ||||| || || |||
Sbjct 371 CTCTCGTTCTTTACATTTC 353
>seq250312
Length=8481
Score = 172 bits (190), Expect = 6e-38
Identities = 317/464 (68%), Gaps = 13/464 (3%)
Strand=Plus/Plus
Query 162901 GAGCACAACATTCTGATGCATCCCTTCCACATGTTGGGTGTCGCAGGTGTCTTCGGTGGT 162960
|||||||||||||| | ||| | || |||||| | || || || ||||| | || |
Sbjct 1574 GAGCACAACATTCTTAGGCACTCATTTCACATGCTAGGCGTAGCTGGTGTAATTGGCAGC 1633
Query 162961 TCACTGTTCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACT 163020
|| || |||||||| |||| ||||| ||||| || || | || | || || ||
Sbjct 1634 TCCCTATTCAGTGCTATGCGTGGTTCCTTGGTAACCCCTAGTTTGATCAGGGAAACCACA 1693
Query 163021 GAAACTGAGTCACAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACATACAACATC 163080
| | ||| | | || | ||||| | ||||||||||||| ||| | || || ||
Sbjct 1694 AAGAATGAATAAGCTAATGAAGGTTATATATTCGGTCAAGAAGGAGAAAATTAGAATATT 1753
Query 163081 GTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCATTCAACAACTCC 163140
|| || || |||||||| || ||||| |||||||||| | |||| |||||||||||
Sbjct 1754 GTAGCCGCTCATGGTTATTTTGGTCGATTGATCTTCCGACATGCTAGTTTCAACAACTCA 1813
Query 163141 CGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTT 163200
|||| || || |||||||| ||| | |||||| |||||||| | | |
Sbjct 1814 CGTTTTTTACATTTCTTCCTAGCTACTTGGCCT---------ATCTGGTTTATTGTGTTA 1864
Query 163201 GGCGTGTCA--ACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTG 163258
| || ||| || ||||| | |||||| || ||||| | ||| | || || | | |
Sbjct 1865 G--GTATCAGCACTATGGCTTACAACCTAAATGGTTTTAGTTTCCATCAATCTGTAGTCG 1922
Query 163259 ATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGACGTTCTGAACCGTGCAGGTTTGGGTA 163318
| |||| ||| ||| | || || ||||| || | | ||| |||| | ||||
Sbjct 1923 ACAGTCAATGTCATGTAATTAATACTTGGGCTGATATCATTAACTGTGCTAACCTTGGTA 1982
Query 163319 TGGAAGTTATGCACGAGCGCAATGCTCACAACTTCCCACTTGAC 163362
||||||||||| | || | |||||||| || ||||| || |||
Sbjct 1983 TGGAAGTTATGTATGAATGTAATGCTCATAATTTCCCTCTAGAC 2026
>seq33322
Length=15627
Score = 120 bits (132), Expect = 3e-22
Identities = 123/161 (76%), Gaps = 6/161 (4%)
Strand=Plus/Plus
Query 164087 CTCCATCTTTTGGAG------TGGCAGCAATCTTCAGATTCCTCTTATTCCTTCAAGGAT 164140
||||| || |||||| | ||||| || || |||| || | || |||||||||
Sbjct 6634 CTCCAACTATTGGAGATCCCATAGCAGCTATATTTCGATTTATCCTCTTTTTTCAAGGAT 6693
Query 164141 TTCATAACTGGACTTTGAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGCGGAG 164200
||||||||||||| |||||||| || ||||||||||||||||| ||| || | || | |
Sbjct 6694 TTCATAACTGGACATTGAACCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGTGCTG 6753
Query 164201 CATTGCTATCTGCTATTCACGGAGTCACAGTTGAAAATACA 164241
| ||||||| |||||||| || | || || |||||||||
Sbjct 6754 CTTTGCTATGCGCTATTCATGGTGCTACCGTAGAAAATACA 6794
>seq10884
Length=5042
Score = 116 bits (128), Expect = 4e-21
Identities = 123/162 (76%), Gaps = 0/162 (0%)
Strand=Plus/Plus
Query 162838 TTCTCTGACGCAATGCCCTTGGGTATCAGTGGTACATTCAACTACATGCTTGTCTTCCAA 162897
|| ||||| | ||||| | || || |||||| ||||||| |||| |||| |||||
Sbjct 3789 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 3848
Query 162898 GCAGAGCACAACATTCTGATGCATCCCTTCCACATGTTGGGTGTCGCAGGTGTCTTCGGT 162957
|| |||||||||||||| ||||| || || |||||| | || || || ||||| |||||
Sbjct 3849 GCTGAGCACAACATTCTTATGCACCCATTTCACATGCTAGGCGTAGCTGGTGTATTCGGC 3908
Query 162958 GGTTCACTGTTCAGTGCAATGCACGGTTCTTTGGTTACATCT 162999
|| || || |||| ||| || || ||||| | ||| || |||
Sbjct 3909 GGCTCCCTATTCATTGCTATACATGGTTCCTCGGTAACCTCT 3950
>seq8631
Length=609
Score = 116 bits (128), Expect = 4e-21
Identities = 107/134 (80%), Gaps = 1/134 (1%)
Strand=Plus/Minus
Query 162867 TGGTACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTGATGCATCCCTT 162926
|||||| ||||||| |||| |||| ||||| || |||||||||||||| ||||| || ||
Sbjct 306 TGGTACTTTCAACTTCATGATTGTATTCCAGGCCGAGCACAACATTCTTATGCACCCATT 247
Query 162927 CCACATGTTGGGTGTCGCAGGTGTCTTCGGTGGTTCACT-GTTCAGTGCAATGCACGGTT 162985
|||||| | | || || ||||| ||||| || || || |||||||| ||||| ||||
Sbjct 246 TCACATGCTAGACGTAGCTGGTGTATTCGGCGGCTCCCTAATTCAGTGCTATGCATGGTT 187
Query 162986 CTTTGGTTACATCT 162999
| ||||| || |||
Sbjct 186 CCTTGGTAACCTCT 173
>seq58055
Length=1185
Score = 114 bits (126), Expect = 1e-20
Identities = 134/181 (74%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 164159 ACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGCGGAGCATTGCTATCTGCTATTC 164218
|||| || ||||||||||||||||| ||| || | || | || ||||||| |||||||
Sbjct 1 ACCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGTGCTGCTTTGCTATGCGCTATTC 60
Query 164219 ACGGAGTCACAGTTGAAAATACATTGTATGAAGATGGAGAACAAGCAAACACCTTTAAGG 164278
| | | || || |||||||| || | ||||||||| || ||||| || || |
Sbjct 61 ATGATGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGCGCAAATACATTCTGTG 120
Query 164279 CGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGT 164338
| ||| | | || || | ||||| |||||||| ||||||||||| || ||||| ||||
Sbjct 121 CTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAATCGCTTTTGGT 180
Query 164339 C 164339
|
Sbjct 181 C 181
>seq264332
Length=996
Score = 104 bits (114), Expect = 3e-17
Identities = 80/95 (84%), Gaps = 0/95 (0%)
Strand=Plus/Minus
Query 163102 GGTCGTTTGATCTTCCAATATGCATCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTT 163161
|| || ||||||||||||||||| ||||||||||| ||||| || || ||||||||
Sbjct 272 GGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCCTA 213
Query 163162 GCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGC 163196
||||| |||||||| || |||||||||||||| ||
Sbjct 212 GCTGCTTGGCCTGTAGTAGGCATCTGGTTCACTGC 178
>seq292072
Length=5858
Score = 93.3 bits (102), Expect = 5e-14
Identities = 81/101 (80%), Gaps = 0/101 (0%)
Strand=Plus/Minus
Query 164299 GAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTGTTGCG 164358
||||| |||||||| ||||||||||| || ||||| ||||| || ||||| || |||||
Sbjct 1533 GAAGAAACTTATTCAATGGTCACTGCTAATCGCTTTTGGTCCCAAATCTTTGGGGTTGCC 1474
Query 164359 TTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGT 164399
|||| || || || ||| | ||||| || ||||| |||||
Sbjct 1473 TTTTTCAATAAACGTTGGTTACATTTCTTTATGTTATTTGT 1433
>seq449122
Length=870
Score = 82.4 bits (90), Expect = 8e-11
Identities = 65/78 (83%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 163044 TTACAAGTTCGGTCAAGAAGAAGAGACATACAACATCGTCGCAGCCCATGGTTACTTCGG 163103
||||| ||||||||||||||||| || ||||| ||||| || || |||||||| || ||
Sbjct 176 TTACAGATTCGGTCAAGAAGAAGAAACTTACAATATCGTAGCCGCTCATGGTTATTTTGG 235
Query 163104 TCGTTTGATCTTCCAATA 163121
| ||||||||||||||
Sbjct 236 CCAATTGATCTTCCAATA 253
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 554350667961200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |