Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_015285.1 Length=174285 Score E Sequences producing significant alignments: (Bits) Value seq107965 300 2e-76 seq300680 172 6e-38 seq250312 172 6e-38 seq33322 120 3e-22 seq10884 116 4e-21 seq8631 116 4e-21 seq58055 114 1e-20 seq264332 104 3e-17 seq292072 93.3 5e-14 seq449122 82.4 8e-11 >seq107965 Length=6474 Score = 300 bits (332), Expect = 2e-76 Identities = 426/599 (71%), Gaps = 0/599 (0%) Strand=Plus/Plus Query 162553 TATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCAC 162612 ||||| ||||| || || | ||| | || |||| ||| || || ||| | || Sbjct 5876 TATGGAAACAATATTATTTTAGGTACCATTATTCCTATTTCTGCAGCTATAGGTTTGCAT 5935 Query 162613 TTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTC 162672 || || || || |||||||| |||| ||||||| ||| | || || |||||||||| Sbjct 5936 TTTTACCCAATATGGGAAGCAACATCTGTTGATGAATGGTTATACAATGGTGGTCCTTAT 5995 Query 162673 CAACTCGTAGTATTCCACTTCCTGATCGGCATCTATGCCTACATGGGACGTGAATGGGAA 162732 |||| | || | |||||| | | || | | |||||||| ||||| |||||| Sbjct 5996 GAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAA 6055 Query 162733 CTCTCTTACCGTCTTGGTATGCGTCCATGGATCTGCGTAGCATACTCTGCACCTGTTGCA 162792 || || ||||| |||||||| | ||||| || ||||| || || ||||||||| Sbjct 6056 CTTAGTTTTCGTCTGGGTATGCGAACTTGGATGGTTGTTGCATATTCAGCTCCTGTTGCA 6115 Query 162793 GCAGCATCGGCAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATG 162852 || || | || ||| || |||| || | |||||||| || ||||| | ||| Sbjct 6116 GCTGCGAGTGTTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATG 6175 Query 162853 CCCTTGGGTATCAGTGGTACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATT 162912 || | || || |||||| ||||||| |||| |||| ||||| || |||||||||||| Sbjct 6176 CCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATT 6235 Query 162913 CTGATGCATCCCTTCCACATGTTGGGTGTCGCAGGTGTCTTCGGTGGTTCACTGTTCAGT 162972 || ||||| || || |||||| | ||||| || ||||| |||| || || || |||||| Sbjct 6236 CTTATGCACCCATTTCACATGCTAGGTGTAGCTGGTGTAATCGGCGGCTCCCTATTCAGT 6295 Query 162973 GCAATGCACGGTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAAACTGAGTCA 163032 || ||||| ||||| ||||| || |||| | || | || || || |||| | | || Sbjct 6296 GCTATGCATGGTTCCTTGGTAACCTCTTGTTTGATCAGGGAAACCACAGAAAATAAATCT 6355 Query 163033 CAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACATACAACATCGTCGCAGCCCAT 163092 || | ||||||| || |||| |||||| || || || || ||||| || | ||| Sbjct 6356 GCTAATGAAGGTTACAGATTTGGTCTAGAAGATGAAACTTATAATATCGTAGCCGTTCAT 6415 Query 163093 GGTTACTTCGGTCGTTTGATCTTCCAATATGCATCATTCAACAACTCCCGTTCCTTGCA 163151 ||||| || || || ||||||||||||||||| ||||||||||| ||||| || || Sbjct 6416 GGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACA 6474 >seq300680 Length=3790 Score = 172 bits (190), Expect = 6e-38 Identities = 231/319 (72%), Gaps = 2/319 (1%) Strand=Plus/Minus Query 162838 TTCTCTGACGCAATGCCCTTGGGTATCAGTGGTACATTCAACTACATGCTTGTCTTCCAA 162897 || ||||| | ||||| | || || |||||| ||||||| |||| |||| ||||| Sbjct 670 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 611 Query 162898 GCAGAGCACAACATTCTGATGCATCCCTTCCACATGTTGGGTGTCGCAGGTGTCTTCGGT 162957 | |||||||||||||| ||||| || || |||||| | | || || ||||| ||| Sbjct 610 GTTGAGCACAACATTCTTATGCACCCATTTCACATGCTAAGCGTAGCTGGTGTACTCGTC 551 Query 162958 GGTTCACTGTTCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTCCGTGAGACG 163017 | || || || | ||| ||||| ||||| ||||| || ||| | || | || || Sbjct 550 AGCTCCCTATTTAATGCTATGCATGGTTCCTTGGTAACCTCTAGTTTAATCAG-GAAACC 492 Query 163018 ACTGAAACTGAGTCACAGAACTATGGTTACAAGTTCGGTCAAGAAGAAG-AGACATACAA 163076 | |||| ||| | || | |||||||| |||||||||||||||| | || || || Sbjct 491 AGAGAAAATGAATTTGCTAATGAAGGTTACAAATTCGGTCAAGAAGAAGAAAACTTATAA 432 Query 163077 CATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCATTCAACAA 163136 ||||| || || |||||||| || || || ||| ||||||| ||||| |||||||| Sbjct 431 TATCGTAGCCGCTCATGGTTATTTTGGCCGATTGGTCTTCCAGTATGCTAGTTTCAACAA 372 Query 163137 CTCCCGTTCCTTGCACTTC 163155 ||| ||||| || || ||| Sbjct 371 CTCTCGTTCTTTACATTTC 353 >seq250312 Length=8481 Score = 172 bits (190), Expect = 6e-38 Identities = 317/464 (68%), Gaps = 13/464 (3%) Strand=Plus/Plus Query 162901 GAGCACAACATTCTGATGCATCCCTTCCACATGTTGGGTGTCGCAGGTGTCTTCGGTGGT 162960 |||||||||||||| | ||| | || |||||| | || || || ||||| | || | Sbjct 1574 GAGCACAACATTCTTAGGCACTCATTTCACATGCTAGGCGTAGCTGGTGTAATTGGCAGC 1633 Query 162961 TCACTGTTCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACT 163020 || || |||||||| |||| ||||| ||||| || || | || | || || || Sbjct 1634 TCCCTATTCAGTGCTATGCGTGGTTCCTTGGTAACCCCTAGTTTGATCAGGGAAACCACA 1693 Query 163021 GAAACTGAGTCACAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACATACAACATC 163080 | | ||| | | || | ||||| | ||||||||||||| ||| | || || || Sbjct 1694 AAGAATGAATAAGCTAATGAAGGTTATATATTCGGTCAAGAAGGAGAAAATTAGAATATT 1753 Query 163081 GTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCATTCAACAACTCC 163140 || || || |||||||| || ||||| |||||||||| | |||| ||||||||||| Sbjct 1754 GTAGCCGCTCATGGTTATTTTGGTCGATTGATCTTCCGACATGCTAGTTTCAACAACTCA 1813 Query 163141 CGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTT 163200 |||| || || |||||||| ||| | |||||| |||||||| | | | Sbjct 1814 CGTTTTTTACATTTCTTCCTAGCTACTTGGCCT---------ATCTGGTTTATTGTGTTA 1864 Query 163201 GGCGTGTCA--ACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTG 163258 | || ||| || ||||| | |||||| || ||||| | ||| | || || | | | Sbjct 1865 G--GTATCAGCACTATGGCTTACAACCTAAATGGTTTTAGTTTCCATCAATCTGTAGTCG 1922 Query 163259 ATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGACGTTCTGAACCGTGCAGGTTTGGGTA 163318 | |||| ||| ||| | || || ||||| || | | ||| |||| | |||| Sbjct 1923 ACAGTCAATGTCATGTAATTAATACTTGGGCTGATATCATTAACTGTGCTAACCTTGGTA 1982 Query 163319 TGGAAGTTATGCACGAGCGCAATGCTCACAACTTCCCACTTGAC 163362 ||||||||||| | || | |||||||| || ||||| || ||| Sbjct 1983 TGGAAGTTATGTATGAATGTAATGCTCATAATTTCCCTCTAGAC 2026 >seq33322 Length=15627 Score = 120 bits (132), Expect = 3e-22 Identities = 123/161 (76%), Gaps = 6/161 (4%) Strand=Plus/Plus Query 164087 CTCCATCTTTTGGAG------TGGCAGCAATCTTCAGATTCCTCTTATTCCTTCAAGGAT 164140 ||||| || |||||| | ||||| || || |||| || | || ||||||||| Sbjct 6634 CTCCAACTATTGGAGATCCCATAGCAGCTATATTTCGATTTATCCTCTTTTTTCAAGGAT 6693 Query 164141 TTCATAACTGGACTTTGAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGCGGAG 164200 ||||||||||||| |||||||| || ||||||||||||||||| ||| || | || | | Sbjct 6694 TTCATAACTGGACATTGAACCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGTGCTG 6753 Query 164201 CATTGCTATCTGCTATTCACGGAGTCACAGTTGAAAATACA 164241 | ||||||| |||||||| || | || || ||||||||| Sbjct 6754 CTTTGCTATGCGCTATTCATGGTGCTACCGTAGAAAATACA 6794 >seq10884 Length=5042 Score = 116 bits (128), Expect = 4e-21 Identities = 123/162 (76%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 162838 TTCTCTGACGCAATGCCCTTGGGTATCAGTGGTACATTCAACTACATGCTTGTCTTCCAA 162897 || ||||| | ||||| | || || |||||| ||||||| |||| |||| ||||| Sbjct 3789 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 3848 Query 162898 GCAGAGCACAACATTCTGATGCATCCCTTCCACATGTTGGGTGTCGCAGGTGTCTTCGGT 162957 || |||||||||||||| ||||| || || |||||| | || || || ||||| ||||| Sbjct 3849 GCTGAGCACAACATTCTTATGCACCCATTTCACATGCTAGGCGTAGCTGGTGTATTCGGC 3908 Query 162958 GGTTCACTGTTCAGTGCAATGCACGGTTCTTTGGTTACATCT 162999 || || || |||| ||| || || ||||| | ||| || ||| Sbjct 3909 GGCTCCCTATTCATTGCTATACATGGTTCCTCGGTAACCTCT 3950 >seq8631 Length=609 Score = 116 bits (128), Expect = 4e-21 Identities = 107/134 (80%), Gaps = 1/134 (1%) Strand=Plus/Minus Query 162867 TGGTACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTGATGCATCCCTT 162926 |||||| ||||||| |||| |||| ||||| || |||||||||||||| ||||| || || Sbjct 306 TGGTACTTTCAACTTCATGATTGTATTCCAGGCCGAGCACAACATTCTTATGCACCCATT 247 Query 162927 CCACATGTTGGGTGTCGCAGGTGTCTTCGGTGGTTCACT-GTTCAGTGCAATGCACGGTT 162985 |||||| | | || || ||||| ||||| || || || |||||||| ||||| |||| Sbjct 246 TCACATGCTAGACGTAGCTGGTGTATTCGGCGGCTCCCTAATTCAGTGCTATGCATGGTT 187 Query 162986 CTTTGGTTACATCT 162999 | ||||| || ||| Sbjct 186 CCTTGGTAACCTCT 173 >seq58055 Length=1185 Score = 114 bits (126), Expect = 1e-20 Identities = 134/181 (74%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 164159 ACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGCGGAGCATTGCTATCTGCTATTC 164218 |||| || ||||||||||||||||| ||| || | || | || ||||||| ||||||| Sbjct 1 ACCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGTGCTGCTTTGCTATGCGCTATTC 60 Query 164219 ACGGAGTCACAGTTGAAAATACATTGTATGAAGATGGAGAACAAGCAAACACCTTTAAGG 164278 | | | || || |||||||| || | ||||||||| || ||||| || || | Sbjct 61 ATGATGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGCGCAAATACATTCTGTG 120 Query 164279 CGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGT 164338 | ||| | | || || | ||||| |||||||| ||||||||||| || ||||| |||| Sbjct 121 CTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAATCGCTTTTGGT 180 Query 164339 C 164339 | Sbjct 181 C 181 >seq264332 Length=996 Score = 104 bits (114), Expect = 3e-17 Identities = 80/95 (84%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 163102 GGTCGTTTGATCTTCCAATATGCATCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTT 163161 || || ||||||||||||||||| ||||||||||| ||||| || || |||||||| Sbjct 272 GGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCCTA 213 Query 163162 GCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGC 163196 ||||| |||||||| || |||||||||||||| || Sbjct 212 GCTGCTTGGCCTGTAGTAGGCATCTGGTTCACTGC 178 >seq292072 Length=5858 Score = 93.3 bits (102), Expect = 5e-14 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 164299 GAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTGTTGCG 164358 ||||| |||||||| ||||||||||| || ||||| ||||| || ||||| || ||||| Sbjct 1533 GAAGAAACTTATTCAATGGTCACTGCTAATCGCTTTTGGTCCCAAATCTTTGGGGTTGCC 1474 Query 164359 TTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGT 164399 |||| || || || ||| | ||||| || ||||| ||||| Sbjct 1473 TTTTTCAATAAACGTTGGTTACATTTCTTTATGTTATTTGT 1433 >seq449122 Length=870 Score = 82.4 bits (90), Expect = 8e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 163044 TTACAAGTTCGGTCAAGAAGAAGAGACATACAACATCGTCGCAGCCCATGGTTACTTCGG 163103 ||||| ||||||||||||||||| || ||||| ||||| || || |||||||| || || Sbjct 176 TTACAGATTCGGTCAAGAAGAAGAAACTTACAATATCGTAGCCGCTCATGGTTATTTTGG 235 Query 163104 TCGTTTGATCTTCCAATA 163121 | |||||||||||||| Sbjct 236 CCAATTGATCTTCCAATA 253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 554350667961200