Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_015287.1 Length=232878 Score E Sequences producing significant alignments: (Bits) Value seq107965 320 2e-82 seq300680 199 6e-46 seq169634 185 1e-41 seq250312 165 1e-35 seq10884 152 8e-32 seq8631 138 2e-27 seq231965 96.9 5e-15 seq254652 87.8 3e-12 seq463071 86.0 9e-12 >seq107965 Length=6474 Score = 320 bits (354), Expect = 2e-82 Identities = 423/587 (72%), Gaps = 0/587 (0%) Strand=Plus/Plus Query 215462 TATGGTAACAACATCATCTCTGGTGCTGTTGTACCTAGTTCAAACGCAATCGGATTACAC 215521 ||||| ||||| || || | ||| | || | |||| ||| || || || || || Sbjct 5876 TATGGAAACAATATTATTTTAGGTACCATTATTCCTATTTCTGCAGCTATAGGTTTGCAT 5935 Query 215522 TTCTACCCTATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGTGGACCTTTC 215581 || ||||| || ||||||||| || | ||||| |||||| | ||||||||||| |||| Sbjct 5936 TTTTACCCAATATGGGAAGCAACATCTGTTGATGAATGGTTATACAATGGTGGTCCTTAT 5995 Query 215582 CAACTGGTTATCTTCCACTTCCTCATTGGTATTTCTGCATACTGCGGAAGACAGTGGGAA 215641 |||| || | | |||||| | ||||| | || ||| || | |||||||| Sbjct 5996 GAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAA 6055 Query 215642 CTTTCTTACAGATTAGGTATGAGACCTTGGATCTGTGTTGCTTACTCCGCACCTGTATCT 215701 ||| || | | |||||| || ||||||| |||||| || || || ||||| | Sbjct 6056 CTTAGTTTTCGTCTGGGTATGCGAACTTGGATGGTTGTTGCATATTCAGCTCCTGTTGCA 6115 Query 215702 GCTGCCTTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCTTTCTCTGATGCTATG 215761 ||||| || || ||| | | || ||| | ||||| || || ||||||| |||| Sbjct 6116 GCTGCGAGTGTTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATG 6175 Query 215762 CCACTTGGAATCTCTGGAACATTCAACTACATGTTTGTTTTCCAGGCTGAGCACAACATT 215821 || || ||||| ||||| || ||||||| |||| |||| ||||||||||||||||||||| Sbjct 6176 CCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATT 6235 Query 215822 CTGATGCACCCATTCCACATGTTAGGTGTGGCTGGTGTCTTCGGTGGTTCATTGTTCTCT 215881 || ||||||||||| |||||| ||||||| |||||||| |||| || || | ||| | Sbjct 6236 CTTATGCACCCATTTCACATGCTAGGTGTAGCTGGTGTAATCGGCGGCTCCCTATTCAGT 6295 Query 215882 GCAATGCACGGTTCACTTGTTACATCTTCTCTAATCAGAGAGACAACTGAGCAAGAATCT 215941 || ||||| ||||| | || || |||| | | ||||| || || || || | ||||| Sbjct 6296 GCTATGCATGGTTCCTTGGTAACCTCTTGTTTGATCAGGGAAACCACAGAAAATAAATCT 6355 Query 215942 CAGAACTACGGTTACAAGTTCGGACAAGAGGAGGAAACATACAACATCGTAGCTGCACAC 216001 || | ||||||| || || | ||| || ||||| || || |||||||| | || Sbjct 6356 GCTAATGAAGGTTACAGATTTGGTCTAGAAGATGAAACTTATAATATCGTAGCCGTTCAT 6415 Query 216002 GGTTACTTTGGTCGCCTCATCTTCCAATACGCATCTTTCAACAACTC 216048 ||||| ||||| || | ||||||||||| || |||||||||||| Sbjct 6416 GGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTC 6462 >seq300680 Length=3790 Score = 199 bits (220), Expect = 6e-46 Identities = 247/332 (74%), Gaps = 6/332 (2%) Strand=Plus/Minus Query 215747 TTCTCTGATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATGTTTGTTTTCCAG 215806 || ||||||| |||||| || ||||| ||||| || ||||||| |||| |||| |||||| Sbjct 670 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 611 Query 215807 GCTGAGCACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCTGGTGTCTTCGGT 215866 | ||||||||||||||| ||||||||||| |||||| || | || |||||||| ||| Sbjct 610 GTTGAGCACAACATTCTTATGCACCCATTTCACATGCTAAGCGTAGCTGGTGTACTCGTC 551 Query 215867 GGTTCATTGTTCTCTGCAATGCACGGTTCACTTGTTACATCTTCTCTAATCAGAGAGACA 215926 | || | || ||| ||||| ||||| | || || ||| | ||||||| || || Sbjct 550 AGCTCCCTATTTAATGCTATGCATGGTTCCTTGGTAACCTCTAGTTTAATCAG-GAAACC 492 Query 215927 ACTGAGCAAGAATCTCAGAACTACGGTTACAAGTTCGGACAAG-AGGAGGAAACATACAA 215985 | || | |||| | || | |||||||| ||||| |||| || || |||| || || Sbjct 491 AGAGAAAATGAATTTGCTAATGAAGGTTACAAATTCGGTCAAGAAGAAGAAAACTTATAA 432 Query 215986 CATCGTAGCTGCACACGGTTACTTTGGTCGCCTCATCTTCCAATACGCATCTTTCAACAA 216045 |||||||| || || ||||| ||||| || | ||||||| || || ||||||||| Sbjct 431 TATCGTAGCCGCTCATGGTTATTTTGGCCGATTGGTCTTCCAGTATGCTAGTTTCAACAA 372 Query 216046 CTCAAGAAGTCTTCACTTCTTCCTTGCAGCAT 216077 ||| | |||| || | |||| |||||||| Sbjct 371 CTCTCG--TTCTTTACAT-TTCC-TGCAGCAT 344 >seq169634 Length=720 Score = 185 bits (204), Expect = 1e-41 Identities = 315/457 (69%), Gaps = 0/457 (0%) Strand=Plus/Minus Query 215314 TACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTCATGATTCCTTGCCTCCTCGC 215373 ||| || || ||| | ||| |||| ||||||||||| | ||||| ||| | | | | Sbjct 457 TACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGAC 398 Query 215374 AGCTACCACTTGTTTCATCGTAGCATTCATCGCTGCACCTCCTGTCGATATCGACGGAAT 215433 || || || || || | || ||||| ||||| ||||| || ||||| || || || Sbjct 397 CGCAACTTCTGTATTTATTATCGCTTTCATTGCTGCTCCTCCAGTGGATATTGATGGTAT 338 Query 215434 CAGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGT 215493 | || || ||| ||| ||| ||| ||||| ||||| || || || |||| || | Sbjct 337 TCGTGAACCTGTTTATGGATCTCTAAGTTATGGAAACAATATTATTTCAGGTGTCATTAT 278 Query 215494 ACCTAGTTCAAACGCAATCGGATTACACTTCTACCCTATCTGGGAAGCAGCAACAGTTGA 215553 |||| ||| || || || || || || ||||| || |||||||||||| | ||||| Sbjct 277 TCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCAATATGGGAAGCAGCATCCGTTGA 218 Query 215554 CGAATGGCTCTACAATGGTGGACCTTTCCAACTGGTTATCTTCCACTTCCTCATTGGTAT 215613 |||||| | ||||||||||| |||| |||| || | | |||||| | ||||| | Sbjct 217 TGAATGGTTATACAATGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGT 158 Query 215614 TTCTGCATACTGCGGAAGACAGTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGAT 215673 || ||| || | ||||||||||| || | | | |||||| |||||||||| Sbjct 157 AGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGACCTTGGAT 98 Query 215674 CTGTGTTGCTTACTCCGCACCTGTATCTGCTGCCTTTGCAGTATTCCTTGTGTATCCATT 215733 |||||| || || || |||| | ||||| ||| || ||| | | || ||| | Sbjct 97 TGTTGTTGCATATTCAGCTTCTGTTGCAGCTGCAACTGCTGTTTTCTTGATCTACCCAAT 38 Query 215734 CGGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGA 215770 ||||| || || ||||||| |||||| || ||| Sbjct 37 TGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGA 1 >seq250312 Length=8481 Score = 165 bits (182), Expect = 1e-35 Identities = 316/467 (68%), Gaps = 9/467 (2%) Strand=Plus/Plus Query 215805 AGGCTGAGCACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCTGGTGTCTTCG 215864 ||| ||||||||||||||| | |||| |||| |||||| |||| || |||||||| | | Sbjct 1569 AGGTTGAGCACAACATTCTTAGGCACTCATTTCACATGCTAGGCGTAGCTGGTGTAATTG 1628 Query 215865 GTGGTTCATTGTTCTCTGCAATGCACGGTTCACTTGTTACATCTTCTCTAATCAGAGAGA 215924 | | || | ||| ||| |||| ||||| | || || || | | ||||| || | Sbjct 1629 GCAGCTCCCTATTCAGTGCTATGCGTGGTTCCTTGGTAACCCCTAGTTTGATCAGGGAAA 1688 Query 215925 CAACTGAGCAAGAATCTCAGAACTACGGTTACAAGTTCGGACAAGAGGAGGAAACATACA 215984 | || || | |||| || | ||||| | ||||| ||||| | |||| || | Sbjct 1689 CCACAAAGAATGAATAAGCTAATGAAGGTTATATATTCGGTCAAGAAGGAGAAAATTAGA 1748 Query 215985 ACATCGTAGCTGCACACGGTTACTTTGGTCGCCTCATCTTCCAATACGCATCTTTCAACA 216044 | || ||||| || || ||||| |||||||| | ||||||| | | || |||||||| Sbjct 1749 ATATTGTAGCCGCTCATGGTTATTTTGGTCGATTGATCTTCCGACATGCTAGTTTCAACA 1808 Query 216045 ACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCTGTTATTTGTATCTGGGCAACTG 216104 ||||| | | | || |||||||| || | | || ||||||| | || Sbjct 1809 ACTCACGTTTTTTACATTTCTTCCTAGCTACTTGGCC---------TATCTGGTTTATTG 1859 Query 216105 CAATGGGTGTCTCAACTATGGCGTTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCG 216164 | ||| || |||||||| | |||||| || ||||| | ||| | || ||||| | Sbjct 1860 TGTTAGGTATCAGCACTATGGCTTACAACCTAAATGGTTTTAGTTTCCATCAATCTGTAG 1919 Query 216165 TAGACGCATCTGGTAAAGTTATTCCTACTTGGGCAGACGTTCTTAACAGAGCAGGACTTG 216224 | ||| || | || ||| ||||||||| || | ||||| | || |||| Sbjct 1920 TCGACAGTCAATGTCATGTAATTAATACTTGGGCTGATATCATTAACTGTGCTAACCTTG 1979 Query 216225 GTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCATTAGAC 216271 |||||||||| ||| | || |||| ||||| || ||||| ||||| Sbjct 1980 GTATGGAAGTTATGTATGAATGTAATGCTCATAATTTCCCTCTAGAC 2026 >seq10884 Length=5042 Score = 152 bits (168), Expect = 8e-32 Identities = 123/149 (83%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 215747 TTCTCTGATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATGTTTGTTTTCCAG 215806 || ||||||| |||||| || ||||| ||||| || ||||||| |||| |||| |||||| Sbjct 3789 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 3848 Query 215807 GCTGAGCACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCTGGTGTCTTCGGT 215866 ||||||||||||||||| ||||||||||| |||||| |||| || |||||||| ||||| Sbjct 3849 GCTGAGCACAACATTCTTATGCACCCATTTCACATGCTAGGCGTAGCTGGTGTATTCGGC 3908 Query 215867 GGTTCATTGTTCTCTGCAATGCACGGTTC 215895 || || | ||| ||| || || ||||| Sbjct 3909 GGCTCCCTATTCATTGCTATACATGGTTC 3937 >seq8631 Length=609 Score = 138 bits (152), Expect = 2e-27 Identities = 124/153 (81%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 215752 TGATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATGTTTGTTTTCCAGGCTGA 215811 ||||| |||||| || ||||| ||||| || ||||||| |||| |||| |||||||| || Sbjct 330 TGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCCGA 271 Query 215812 GCACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCTGGTGTCTTCGGTGG-TT 215870 |||||||||||| ||||||||||| |||||| ||| || |||||||| ||||| || | Sbjct 270 GCACAACATTCTTATGCACCCATTTCACATGCTAGACGTAGCTGGTGTATTCGGCGGCTC 211 Query 215871 CATTGTTCTCTGCAATGCACGGTTCACTTGTTA 215903 | | ||| ||| ||||| ||||| |||| || Sbjct 210 CCTAATTCAGTGCTATGCATGGTTC-CTTGGTA 179 >seq231965 Length=7494 Score = 96.9 bits (106), Expect = 5e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 215747 TTCTCTGATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATGTTTGTTTTCCAG 215806 || ||| ||| ||| || || ||||| | ||| || ||||||| |||| |||| || || Sbjct 6663 TTTTCTCATGGTATTCCTCTAGGAATTTATGGTACTTTCAACTTCATGATTGTATTTAAG 6722 Query 215807 GCTGAGCACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCTGGTGT 215859 | ||||||||||||||| ||||||||||| ||||| |||| || | ||||| Sbjct 6723 GTTGAGCACAACATTCTTATGCACCCATTTTACATGCTAGGCGTAGACGGTGT 6775 >seq254652 Length=6058 Score = 87.8 bits (96), Expect = 3e-12 Identities = 173/255 (68%), Gaps = 1/255 (0%) Strand=Plus/Plus Query 215453 TCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTACCTAGTTCAAACGCAATC 215512 ||| || | ||||| ||||| || || || |||| |||| | |||| ||| | || | Sbjct 702 TCTCTACTTTATGGAAACAATATTATTTCAGGTGTTGTTATTCCTACTTCTACAGCTACA 761 Query 215513 GGATTACACTTCTACCCTATCTGGGAAGCAGCAACAGTTGACGAATGGCTC-TACAATGG 215571 || || || || |||| || | ||||||| || ||||| |||||| | |||||||| Sbjct 762 GGTTTGCATTTTTACCTAATATAGGAAGCAACATTTGTTGATGAATGGTTTATACAATGG 821 Query 215572 TGGACCTTTCCAACTGGTTATCTTCCACTTCCTCATTGGTATTTCTGCATACTGCGGAAG 215631 ||| |||| |||| || | | |||||| | ||||| | | ||| || | Sbjct 822 TGGTCCTTATGAACTAATTGTACTACACTTCTTACTTGGTGTAGCGTGTTACATGGGTCG 881 Query 215632 ACAGTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGATCTGTGTTGCTTACTCCGC 215691 ||||||||||| || | | | ||| || |||||| ||| |||||| || || || Sbjct 882 CGAGTGGGAACTTAGTTTCCGTCTGGGTGTGCGACCTTTGATTGTTGTTGCATATTCAGC 941 Query 215692 ACCTGTATCTGCTGC 215706 ||| | | ||||| Sbjct 942 TCCTATTACAGCTGC 956 >seq463071 Length=4227 Score = 86.0 bits (94), Expect = 9e-12 Identities = 92/121 (76%), Gaps = 2/121 (2%) Strand=Plus/Minus Query 215745 CTTTCTCTGATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATGTTTGTTTTCC 215804 ||||||| ||| ||||| | ||||| ||| | || || ||| |||| |||| || | Sbjct 1539 CTTTCTC--ATGGTATGCTTTTAGGAATTTCTAGTACTTTTTACTTCATGATTGTATTAC 1482 Query 215805 AGGCTGAGCACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCTGGTGTCTTCG 215864 ||| ||||||||||||||| || |||| || |||||| ||||||| || |||| || | Sbjct 1481 AGGTTGAGCACAACATTCTTATACACCTGTTTCACATGCTAGGTGTACCTAGTGTATTTG 1422 Query 215865 G 215865 | Sbjct 1421 G 1421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740761002190880