Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27]
463,906 sequences; 661,937,708 total letters
Query= NC_015290.1
Length=182180
Score E
Sequences producing significant alignments: (Bits) Value
seq107965 306 4e-78
seq169634 197 2e-45
seq250312 183 4e-41
seq300680 179 4e-40
seq10884 125 8e-24
seq8631 122 1e-22
seq254652 95.1 1e-14
seq231965 82.4 9e-11
>seq107965
Length=6474
Score = 306 bits (338), Expect = 4e-78
Identities = 418/584 (72%), Gaps = 0/584 (0%)
Strand=Plus/Plus
Query 169858 TATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCAC 169917
||||| ||||| || || | ||| | || |||| ||| || || ||| | ||
Sbjct 5876 TATGGAAACAATATTATTTTAGGTACCATTATTCCTATTTCTGCAGCTATAGGTTTGCAT 5935
Query 169918 TTCTATCCTATTTGGGAAGCAGCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTAT 169977
|| || || || ||||||||| || || | ||||| ||||| || || ||||||||||||
Sbjct 5936 TTTTACCCAATATGGGAAGCAACATCTGTTGATGAATGGTTATACAATGGTGGTCCTTAT 5995
Query 169978 CAATTAGTTATCTTCCACTTCCTTATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAA 170037
|| || || | | |||||| | | || | || ||||||||| | ||||||||
Sbjct 5996 GAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAA 6055
Query 170038 CTATCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTAGCATATTCTGCTCCAGTGTCA 170097
|| | ||| | |||||||| ||||||| ||| |||||||| ||||| || ||
Sbjct 6056 CTTAGTTTTCGTCTGGGTATGCGAACTTGGATGGTTGTTGCATATTCAGCTCCTGTTGCA 6115
Query 170098 GCAGCATTCGCTGTATTCTTAGTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATG 170157
|| || | ||| ||||| | || || | ||||| ||| || || || || |||
Sbjct 6116 GCTGCGAGTGTTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATG 6175
Query 170158 CCTCTAGGTATCTCAGGTACATTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACATT 170217
|||||||| || || ||||| || ||||||||| | |||||||| || ||||||||||||
Sbjct 6176 CCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATT 6235
Query 170218 CTTATGCACCCATTCCATATGGCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTTCTCA 170277
|||||||||||||| || ||| ||| || |||||| | |||| || | || |||
Sbjct 6236 CTTATGCACCCATTTCACATGCTAGGTGTAGCTGGTGTAATCGGCGGCTCCCTATTCAGT 6295
Query 170278 GCAATGCACGGTTCACTTGTAACATCTTCTCTAATCAGAGAGACAACAGATAACGAGTCA 170337
|| ||||| ||||| | ||||| |||| | | ||||| || || ||||| || | ||
Sbjct 6296 GCTATGCATGGTTCCTTGGTAACCTCTTGTTTGATCAGGGAAACCACAGAAAATAAATCT 6355
Query 170338 CAGAACTATGGATACAAATTCGGACAAGAAGAAGAAACATACAACATTGTTGCAGCACAT 170397
|| | || |||| ||| || | |||||| ||||| || || || || || | |||
Sbjct 6356 GCTAATGAAGGTTACAGATTTGGTCTAGAAGATGAAACTTATAATATCGTAGCCGTTCAT 6415
Query 170398 GGATACTTTGGTAGACTTATCTTCCAATATGCTAGCTTTAACAA 170441
|| || ||||| || | ||||||||||||||||| || |||||
Sbjct 6416 GGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAA 6459
>seq169634
Length=720
Score = 197 bits (218), Expect = 2e-45
Identities = 313/449 (70%), Gaps = 0/449 (0%)
Strand=Plus/Minus
Query 169717 AACCGCATCTATGTTGGTTGGTTCGGTGTCTTGATGATCCCATGTCTATTAGCAGCAGCA 169776
||||| | || |||| ||||| ||||| ||||||||||| |||| | ||| |
Sbjct 450 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACT 391
Query 169777 ACCTGCTTTATCGTTGCTTTCATCGCAGCTCCACCTGTGGACATCGATGGAATCAGAGAA 169836
| ||||| | |||||||| || ||||| || ||||| || ||||| || | |||
Sbjct 390 TCTGTATTTATTATCGCTTTCATTGCTGCTCCTCCAGTGGATATTGATGGTATTCGTGAA 331
Query 169837 CCTGTAGCAGGTTCATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCT 169896
||||| || || | | ||||| ||||| || || || |||| || |||| ||
Sbjct 330 CCTGTTTATGGATCTCTAAGTTATGGAAACAATATTATTTCAGGTGTCATTATTCCTACT 271
Query 169897 TCAAACGCAATCGGTCTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTAGATGAGTGG 169956
|| || || ||| | || || || || || |||||||||||| | | ||||| |||
Sbjct 270 TCTGCAGCTATAGGTTTGCATTTTTACCCAATATGGGAAGCAGCATCCGTTGATGAATGG 211
Query 169957 TTGTATAACGGTGGTCCTTATCAATTAGTTATCTTCCACTTCCTTATCGGAATCTCTGCC 170016
|| || || |||||||||||| || || || | | |||||| | | || | ||
Sbjct 210 TTATACAATGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGT 151
Query 170017 TACATGGGTAGACAGTGGGAACTATCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTA 170076
||||||||| | |||||||||| | |||| | |||||||| |||||||| |||
Sbjct 150 TACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGACCTTGGATTGTTGTT 91
Query 170077 GCATATTCTGCTCCAGTGTCAGCAGCATTCGCTGTATTCTTAGTGTATCCTTTCGGTCAG 170136
|||||||| ||| | || |||| ||| ||||| ||||| | || || | |||||
Sbjct 90 GCATATTCAGCTTCTGTTGCAGCTGCAACTGCTGTTTTCTTGATCTACCCAATTGGTCAA 31
Query 170137 GGATCTTTCTCAGACGGAATGCCTCTAGG 170165
||| || || || || |||||||||||
Sbjct 30 GGAAGCTTTTCTGATGGTATGCCTCTAGG 2
>seq250312
Length=8481
Score = 183 bits (202), Expect = 4e-41
Identities = 317/462 (69%), Gaps = 9/462 (2%)
Strand=Plus/Plus
Query 170206 GAGCACAACATTCTTATGCACCCATTCCATATGGCAGGGGTTGCTGGTATGTTCGGAGGA 170265
|||||||||||||||| |||| |||| || ||| ||| || |||||| | | || |
Sbjct 1574 GAGCACAACATTCTTAGGCACTCATTTCACATGCTAGGCGTAGCTGGTGTAATTGGCAGC 1633
Query 170266 GCACTCTTCTCAGCAATGCACGGTTCACTTGTAACATCTTCTCTAATCAGAGAGACAACA 170325
| || ||| || |||| ||||| | ||||| || | | ||||| || || |||
Sbjct 1634 TCCCTATTCAGTGCTATGCGTGGTTCCTTGGTAACCCCTAGTTTGATCAGGGAAACCACA 1693
Query 170326 GATAACGAGTCACAGAACTATGGATACAAATTCGGACAAGAAGAAGAAACATACAACATT 170385
| || || | | || | || || | |||||| ||||||| ||||| || || |||
Sbjct 1694 AAGAATGAATAAGCTAATGAAGGTTATATATTCGGTCAAGAAGGAGAAAATTAGAATATT 1753
Query 170386 GTTGCAGCACATGGATACTTTGGTAGACTTATCTTCCAATATGCTAGCTTTAACAATAGT 170445
|| || || ||||| || |||||| || | ||||||| | ||||||| || |||||
Sbjct 1754 GTAGCCGCTCATGGTTATTTTGGTCGATTGATCTTCCGACATGCTAGTTTCAACAACTCA 1813
Query 170446 CGTAGTCTTCACTTCTTCCTTGCTACATTCCCTGTAGTATGCATCTGGTTAACTTCAATG 170505
||| | | || |||||||| ||||| | ||| |||||||| | | |
Sbjct 1814 CGTTTTTTACATTTCTTCCTAGCTACTTGGCCT---------ATCTGGTTTATTGTGTTA 1864
Query 170506 GGTATTTGCACAATGGCATTTAACCTTAATGGATTTAACTTCAACCAGTCAATCGTAGAT 170565
||||| |||| ||||| | ||||| ||||| |||| ||| | || || | || ||
Sbjct 1865 GGTATCAGCACTATGGCTTACAACCTAAATGGTTTTAGTTTCCATCAATCTGTAGTCGAC 1924
Query 170566 GGATCTGGTAAAGTAGTTCCTACATGGGCAGACGTTCTTAACAGAGCAAACCTAGGTATG 170625
| || | ||| || ||| ||||| || | ||||| | || ||||| ||||||
Sbjct 1925 AGTCAATGTCATGTAATTAATACTTGGGCTGATATCATTAACTGTGCTAACCTTGGTATG 1984
Query 170626 GAAGTAATGCATGAGCGTAATGCACACAACTTCCCACTTGAC 170667
||||| ||| |||| ||||||| || || ||||| || |||
Sbjct 1985 GAAGTTATGTATGAATGTAATGCTCATAATTTCCCTCTAGAC 2026
>seq300680
Length=3790
Score = 179 bits (198), Expect = 4e-40
Identities = 237/324 (73%), Gaps = 5/324 (2%)
Strand=Plus/Minus
Query 170143 TTCTCAGACGGAATGCCTCTAGGTATCTCAGGTACATTTAACTTCATGTTCGTATTCCAA 170202
|| || || || ||||||||||| || || ||||| || ||||||||| | ||||||||
Sbjct 670 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 611
Query 170203 GCAGAGCACAACATTCTTATGCACCCATTCCATATGGCAGGGGTTGCTGGTATGTTCGGA 170262
| |||||||||||||||||||||||||| || ||| | | || |||||| | |||
Sbjct 610 GTTGAGCACAACATTCTTATGCACCCATTTCACATGCTAAGCGTAGCTGGTGTACTCGTC 551
Query 170263 GGAGCACTCTTCTCAGCAATGCACGGTTCACTTGTAACATCTTCTCTAATCAGAGAGACA 170322
| | || || || ||||| ||||| | ||||| ||| | ||||||| || ||
Sbjct 550 AGCTCCCTATTTAATGCTATGCATGGTTCCTTGGTAACCTCTAGTTTAATCAG-GAAACC 492
Query 170323 ACAGATAACGAGTCACAGAACTATGGATACAAATTCGGACAAGAAGAAG-AAACATACAA 170381
| ||| || || | || | || ||||||||||| |||||||||| |||| || ||
Sbjct 491 AGAGAAAATGAATTTGCTAATGAAGGTTACAAATTCGGTCAAGAAGAAGAAAACTTATAA 432
Query 170382 CATTGTTGCAGCACATGGATACTTTGGTAGACTTATCTTCCAATATGCTAGCTTTAACAA 170441
|| || || || ||||| || ||||| || | ||||||| |||||||| || |||||
Sbjct 431 TATCGTAGCCGCTCATGGTTATTTTGGCCGATTGGTCTTCCAGTATGCTAGTTTCAACAA 372
Query 170442 TAGTCGTAGTCTTCACTTCTTCCT 170465
|||| |||| || | |||||
Sbjct 371 CTCTCGT--TCTTTACAT-TTCCT 351
>seq10884
Length=5042
Score = 125 bits (138), Expect = 8e-24
Identities = 125/162 (77%), Gaps = 0/162 (0%)
Strand=Plus/Plus
Query 170143 TTCTCAGACGGAATGCCTCTAGGTATCTCAGGTACATTTAACTTCATGTTCGTATTCCAA 170202
|| || || || ||||||||||| || || ||||| || ||||||||| | ||||||||
Sbjct 3789 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 3848
Query 170203 GCAGAGCACAACATTCTTATGCACCCATTCCATATGGCAGGGGTTGCTGGTATGTTCGGA 170262
|| |||||||||||||||||||||||||| || ||| ||| || |||||| | |||||
Sbjct 3849 GCTGAGCACAACATTCTTATGCACCCATTTCACATGCTAGGCGTAGCTGGTGTATTCGGC 3908
Query 170263 GGAGCACTCTTCTCAGCAATGCACGGTTCACTTGTAACATCT 170304
|| | || ||| || || || ||||| ||||| |||
Sbjct 3909 GGCTCCCTATTCATTGCTATACATGGTTCCTCGGTAACCTCT 3950
>seq8631
Length=609
Score = 122 bits (134), Expect = 1e-22
Identities = 122/157 (78%), Gaps = 1/157 (1%)
Strand=Plus/Minus
Query 170149 GACGGAATGCCTCTAGGTATCTCAGGTACATTTAACTTCATGTTCGTATTCCAAGCAGAG 170208
|| || ||||||||||| || || ||||| || ||||||||| | |||||||| || |||
Sbjct 329 GATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCCGAG 270
Query 170209 CACAACATTCTTATGCACCCATTCCATATGGCAGGGGTTGCTGGTATGTTCGGAGGAGCA 170268
||||||||||||||||||||||| || ||| || || |||||| | ||||| || |
Sbjct 269 CACAACATTCTTATGCACCCATTTCACATGCTAGACGTAGCTGGTGTATTCGGCGGCTCC 210
Query 170269 CT-CTTCTCAGCAATGCACGGTTCACTTGTAACATCT 170304
|| ||| || ||||| ||||| | ||||| |||
Sbjct 209 CTAATTCAGTGCTATGCATGGTTCCTTGGTAACCTCT 173
Score = 86.0 bits (94), Expect = 7e-12
Identities = 112/155 (72%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 169915 CACTTCTATCCTATTTGGGAAGCAGCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCT 169974
|| || || || || |||||||||||| | | ||||| ||||| || || |||||||||
Sbjct 497 CATTTTTACCCAATATGGGAAGCAGCATCCATTGATGAATGGTTATACAATGGTGGTCCT 438
Query 169975 TATCAATTAGTTATCTTCCACTTCCTTATCGGAATCTCTGCCTACATGGGTAGACAGTGG 170034
||| || || || | | |||||| | | || | || ||||||||| | |||||
Sbjct 437 TATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGG 378
Query 170035 GAACTATCATACCGTTTAGGTATGCGTCCTTGGAT 170069
||||| | |||| | | |||||| ||||||||
Sbjct 377 GAACTTAGTTTCCGTCTGGATATGCGCCCTTGGAT 343
>seq254652
Length=6058
Score = 95.1 bits (104), Expect = 1e-14
Identities = 162/234 (69%), Gaps = 1/234 (0%)
Strand=Plus/Plus
Query 169858 TATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCAC 169917
||||| ||||| || || || |||| ||| |||| |||| | || | ||| | ||
Sbjct 711 TATGGAAACAATATTATTTCAGGTGTTGTTATTCCTACTTCTACAGCTACAGGTTTGCAT 770
Query 169918 TTCTATCCTATTTGGGAAGCAGCAACTCTAGATGAGTGGTTG-TATAACGGTGGTCCTTA 169976
|| || | || | ||||||| || | | ||||| ||||| || || |||||||||||
Sbjct 771 TTTTACCTAATATAGGAAGCAACATTTGTTGATGAATGGTTTATACAATGGTGGTCCTTA 830
Query 169977 TCAATTAGTTATCTTCCACTTCCTTATCGGAATCTCTGCCTACATGGGTAGACAGTGGGA 170036
| || || || | | |||||| | | || | | ||||||||| | |||||||
Sbjct 831 TGAACTAATTGTACTACACTTCTTACTTGGTGTAGCGTGTTACATGGGTCGCGAGTGGGA 890
Query 170037 ACTATCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTAGCATATTCTGCTCC 170090
||| | |||| | ||| |||| |||| ||| ||| |||||||| |||||
Sbjct 891 ACTTAGTTTCCGTCTGGGTGTGCGACCTTTGATTGTTGTTGCATATTCAGCTCC 944
>seq231965
Length=7494
Score = 82.4 bits (90), Expect = 9e-11
Identities = 120/170 (71%), Gaps = 0/170 (0%)
Strand=Plus/Plus
Query 170062 CCTTGGATCTGTGTAGCATATTCTGCTCCAGTGTCAGCAGCATTCGCTGTATTCTTAGTG 170121
|||||||| ||| |||||| | |||| || || | || | ||| ||||| |
Sbjct 6582 CCTTGGATTATTGTTGCATATCCAGCTCTTGTTGCAACTGCGACTGATGTTTTCTTGATC 6641
Query 170122 TATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATGCCTCTAGGTATCTCAGGTACATTT 170181
|| || | |||| || || || | || || |||||||| || | ||||| ||
Sbjct 6642 TACCCAATTTGTCAATGAAGCTTTTCTCATGGTATTCCTCTAGGAATTTATGGTACTTTC 6701
Query 170182 AACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCACCCATT 170231
||||||||| | ||||| | | ||||||||||||||||||||||||||
Sbjct 6702 AACTTCATGATTGTATTTAAGGTTGAGCACAACATTCTTATGCACCCATT 6751
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 579468166446400
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