Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_015290.1 Length=182180 Score E Sequences producing significant alignments: (Bits) Value seq107965 306 4e-78 seq169634 197 2e-45 seq250312 183 4e-41 seq300680 179 4e-40 seq10884 125 8e-24 seq8631 122 1e-22 seq254652 95.1 1e-14 seq231965 82.4 9e-11 >seq107965 Length=6474 Score = 306 bits (338), Expect = 4e-78 Identities = 418/584 (72%), Gaps = 0/584 (0%) Strand=Plus/Plus Query 169858 TATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCAC 169917 ||||| ||||| || || | ||| | || |||| ||| || || ||| | || Sbjct 5876 TATGGAAACAATATTATTTTAGGTACCATTATTCCTATTTCTGCAGCTATAGGTTTGCAT 5935 Query 169918 TTCTATCCTATTTGGGAAGCAGCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTAT 169977 || || || || ||||||||| || || | ||||| ||||| || || |||||||||||| Sbjct 5936 TTTTACCCAATATGGGAAGCAACATCTGTTGATGAATGGTTATACAATGGTGGTCCTTAT 5995 Query 169978 CAATTAGTTATCTTCCACTTCCTTATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAA 170037 || || || | | |||||| | | || | || ||||||||| | |||||||| Sbjct 5996 GAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAA 6055 Query 170038 CTATCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTAGCATATTCTGCTCCAGTGTCA 170097 || | ||| | |||||||| ||||||| ||| |||||||| ||||| || || Sbjct 6056 CTTAGTTTTCGTCTGGGTATGCGAACTTGGATGGTTGTTGCATATTCAGCTCCTGTTGCA 6115 Query 170098 GCAGCATTCGCTGTATTCTTAGTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATG 170157 || || | ||| ||||| | || || | ||||| ||| || || || || ||| Sbjct 6116 GCTGCGAGTGTTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATG 6175 Query 170158 CCTCTAGGTATCTCAGGTACATTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACATT 170217 |||||||| || || ||||| || ||||||||| | |||||||| || |||||||||||| Sbjct 6176 CCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATT 6235 Query 170218 CTTATGCACCCATTCCATATGGCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTTCTCA 170277 |||||||||||||| || ||| ||| || |||||| | |||| || | || ||| Sbjct 6236 CTTATGCACCCATTTCACATGCTAGGTGTAGCTGGTGTAATCGGCGGCTCCCTATTCAGT 6295 Query 170278 GCAATGCACGGTTCACTTGTAACATCTTCTCTAATCAGAGAGACAACAGATAACGAGTCA 170337 || ||||| ||||| | ||||| |||| | | ||||| || || ||||| || | || Sbjct 6296 GCTATGCATGGTTCCTTGGTAACCTCTTGTTTGATCAGGGAAACCACAGAAAATAAATCT 6355 Query 170338 CAGAACTATGGATACAAATTCGGACAAGAAGAAGAAACATACAACATTGTTGCAGCACAT 170397 || | || |||| ||| || | |||||| ||||| || || || || || | ||| Sbjct 6356 GCTAATGAAGGTTACAGATTTGGTCTAGAAGATGAAACTTATAATATCGTAGCCGTTCAT 6415 Query 170398 GGATACTTTGGTAGACTTATCTTCCAATATGCTAGCTTTAACAA 170441 || || ||||| || | ||||||||||||||||| || ||||| Sbjct 6416 GGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAA 6459 >seq169634 Length=720 Score = 197 bits (218), Expect = 2e-45 Identities = 313/449 (70%), Gaps = 0/449 (0%) Strand=Plus/Minus Query 169717 AACCGCATCTATGTTGGTTGGTTCGGTGTCTTGATGATCCCATGTCTATTAGCAGCAGCA 169776 ||||| | || |||| ||||| ||||| ||||||||||| |||| | ||| | Sbjct 450 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACT 391 Query 169777 ACCTGCTTTATCGTTGCTTTCATCGCAGCTCCACCTGTGGACATCGATGGAATCAGAGAA 169836 | ||||| | |||||||| || ||||| || ||||| || ||||| || | ||| Sbjct 390 TCTGTATTTATTATCGCTTTCATTGCTGCTCCTCCAGTGGATATTGATGGTATTCGTGAA 331 Query 169837 CCTGTAGCAGGTTCATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCT 169896 ||||| || || | | ||||| ||||| || || || |||| || |||| || Sbjct 330 CCTGTTTATGGATCTCTAAGTTATGGAAACAATATTATTTCAGGTGTCATTATTCCTACT 271 Query 169897 TCAAACGCAATCGGTCTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTAGATGAGTGG 169956 || || || ||| | || || || || || |||||||||||| | | ||||| ||| Sbjct 270 TCTGCAGCTATAGGTTTGCATTTTTACCCAATATGGGAAGCAGCATCCGTTGATGAATGG 211 Query 169957 TTGTATAACGGTGGTCCTTATCAATTAGTTATCTTCCACTTCCTTATCGGAATCTCTGCC 170016 || || || |||||||||||| || || || | | |||||| | | || | || Sbjct 210 TTATACAATGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGT 151 Query 170017 TACATGGGTAGACAGTGGGAACTATCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTA 170076 ||||||||| | |||||||||| | |||| | |||||||| |||||||| ||| Sbjct 150 TACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGACCTTGGATTGTTGTT 91 Query 170077 GCATATTCTGCTCCAGTGTCAGCAGCATTCGCTGTATTCTTAGTGTATCCTTTCGGTCAG 170136 |||||||| ||| | || |||| ||| ||||| ||||| | || || | ||||| Sbjct 90 GCATATTCAGCTTCTGTTGCAGCTGCAACTGCTGTTTTCTTGATCTACCCAATTGGTCAA 31 Query 170137 GGATCTTTCTCAGACGGAATGCCTCTAGG 170165 ||| || || || || ||||||||||| Sbjct 30 GGAAGCTTTTCTGATGGTATGCCTCTAGG 2 >seq250312 Length=8481 Score = 183 bits (202), Expect = 4e-41 Identities = 317/462 (69%), Gaps = 9/462 (2%) Strand=Plus/Plus Query 170206 GAGCACAACATTCTTATGCACCCATTCCATATGGCAGGGGTTGCTGGTATGTTCGGAGGA 170265 |||||||||||||||| |||| |||| || ||| ||| || |||||| | | || | Sbjct 1574 GAGCACAACATTCTTAGGCACTCATTTCACATGCTAGGCGTAGCTGGTGTAATTGGCAGC 1633 Query 170266 GCACTCTTCTCAGCAATGCACGGTTCACTTGTAACATCTTCTCTAATCAGAGAGACAACA 170325 | || ||| || |||| ||||| | ||||| || | | ||||| || || ||| Sbjct 1634 TCCCTATTCAGTGCTATGCGTGGTTCCTTGGTAACCCCTAGTTTGATCAGGGAAACCACA 1693 Query 170326 GATAACGAGTCACAGAACTATGGATACAAATTCGGACAAGAAGAAGAAACATACAACATT 170385 | || || | | || | || || | |||||| ||||||| ||||| || || ||| Sbjct 1694 AAGAATGAATAAGCTAATGAAGGTTATATATTCGGTCAAGAAGGAGAAAATTAGAATATT 1753 Query 170386 GTTGCAGCACATGGATACTTTGGTAGACTTATCTTCCAATATGCTAGCTTTAACAATAGT 170445 || || || ||||| || |||||| || | ||||||| | ||||||| || ||||| Sbjct 1754 GTAGCCGCTCATGGTTATTTTGGTCGATTGATCTTCCGACATGCTAGTTTCAACAACTCA 1813 Query 170446 CGTAGTCTTCACTTCTTCCTTGCTACATTCCCTGTAGTATGCATCTGGTTAACTTCAATG 170505 ||| | | || |||||||| ||||| | ||| |||||||| | | | Sbjct 1814 CGTTTTTTACATTTCTTCCTAGCTACTTGGCCT---------ATCTGGTTTATTGTGTTA 1864 Query 170506 GGTATTTGCACAATGGCATTTAACCTTAATGGATTTAACTTCAACCAGTCAATCGTAGAT 170565 ||||| |||| ||||| | ||||| ||||| |||| ||| | || || | || || Sbjct 1865 GGTATCAGCACTATGGCTTACAACCTAAATGGTTTTAGTTTCCATCAATCTGTAGTCGAC 1924 Query 170566 GGATCTGGTAAAGTAGTTCCTACATGGGCAGACGTTCTTAACAGAGCAAACCTAGGTATG 170625 | || | ||| || ||| ||||| || | ||||| | || ||||| |||||| Sbjct 1925 AGTCAATGTCATGTAATTAATACTTGGGCTGATATCATTAACTGTGCTAACCTTGGTATG 1984 Query 170626 GAAGTAATGCATGAGCGTAATGCACACAACTTCCCACTTGAC 170667 ||||| ||| |||| ||||||| || || ||||| || ||| Sbjct 1985 GAAGTTATGTATGAATGTAATGCTCATAATTTCCCTCTAGAC 2026 >seq300680 Length=3790 Score = 179 bits (198), Expect = 4e-40 Identities = 237/324 (73%), Gaps = 5/324 (2%) Strand=Plus/Minus Query 170143 TTCTCAGACGGAATGCCTCTAGGTATCTCAGGTACATTTAACTTCATGTTCGTATTCCAA 170202 || || || || ||||||||||| || || ||||| || ||||||||| | |||||||| Sbjct 670 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 611 Query 170203 GCAGAGCACAACATTCTTATGCACCCATTCCATATGGCAGGGGTTGCTGGTATGTTCGGA 170262 | |||||||||||||||||||||||||| || ||| | | || |||||| | ||| Sbjct 610 GTTGAGCACAACATTCTTATGCACCCATTTCACATGCTAAGCGTAGCTGGTGTACTCGTC 551 Query 170263 GGAGCACTCTTCTCAGCAATGCACGGTTCACTTGTAACATCTTCTCTAATCAGAGAGACA 170322 | | || || || ||||| ||||| | ||||| ||| | ||||||| || || Sbjct 550 AGCTCCCTATTTAATGCTATGCATGGTTCCTTGGTAACCTCTAGTTTAATCAG-GAAACC 492 Query 170323 ACAGATAACGAGTCACAGAACTATGGATACAAATTCGGACAAGAAGAAG-AAACATACAA 170381 | ||| || || | || | || ||||||||||| |||||||||| |||| || || Sbjct 491 AGAGAAAATGAATTTGCTAATGAAGGTTACAAATTCGGTCAAGAAGAAGAAAACTTATAA 432 Query 170382 CATTGTTGCAGCACATGGATACTTTGGTAGACTTATCTTCCAATATGCTAGCTTTAACAA 170441 || || || || ||||| || ||||| || | ||||||| |||||||| || ||||| Sbjct 431 TATCGTAGCCGCTCATGGTTATTTTGGCCGATTGGTCTTCCAGTATGCTAGTTTCAACAA 372 Query 170442 TAGTCGTAGTCTTCACTTCTTCCT 170465 |||| |||| || | ||||| Sbjct 371 CTCTCGT--TCTTTACAT-TTCCT 351 >seq10884 Length=5042 Score = 125 bits (138), Expect = 8e-24 Identities = 125/162 (77%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 170143 TTCTCAGACGGAATGCCTCTAGGTATCTCAGGTACATTTAACTTCATGTTCGTATTCCAA 170202 || || || || ||||||||||| || || ||||| || ||||||||| | |||||||| Sbjct 3789 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 3848 Query 170203 GCAGAGCACAACATTCTTATGCACCCATTCCATATGGCAGGGGTTGCTGGTATGTTCGGA 170262 || |||||||||||||||||||||||||| || ||| ||| || |||||| | ||||| Sbjct 3849 GCTGAGCACAACATTCTTATGCACCCATTTCACATGCTAGGCGTAGCTGGTGTATTCGGC 3908 Query 170263 GGAGCACTCTTCTCAGCAATGCACGGTTCACTTGTAACATCT 170304 || | || ||| || || || ||||| ||||| ||| Sbjct 3909 GGCTCCCTATTCATTGCTATACATGGTTCCTCGGTAACCTCT 3950 >seq8631 Length=609 Score = 122 bits (134), Expect = 1e-22 Identities = 122/157 (78%), Gaps = 1/157 (1%) Strand=Plus/Minus Query 170149 GACGGAATGCCTCTAGGTATCTCAGGTACATTTAACTTCATGTTCGTATTCCAAGCAGAG 170208 || || ||||||||||| || || ||||| || ||||||||| | |||||||| || ||| Sbjct 329 GATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCCGAG 270 Query 170209 CACAACATTCTTATGCACCCATTCCATATGGCAGGGGTTGCTGGTATGTTCGGAGGAGCA 170268 ||||||||||||||||||||||| || ||| || || |||||| | ||||| || | Sbjct 269 CACAACATTCTTATGCACCCATTTCACATGCTAGACGTAGCTGGTGTATTCGGCGGCTCC 210 Query 170269 CT-CTTCTCAGCAATGCACGGTTCACTTGTAACATCT 170304 || ||| || ||||| ||||| | ||||| ||| Sbjct 209 CTAATTCAGTGCTATGCATGGTTCCTTGGTAACCTCT 173 Score = 86.0 bits (94), Expect = 7e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 169915 CACTTCTATCCTATTTGGGAAGCAGCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCT 169974 || || || || || |||||||||||| | | ||||| ||||| || || ||||||||| Sbjct 497 CATTTTTACCCAATATGGGAAGCAGCATCCATTGATGAATGGTTATACAATGGTGGTCCT 438 Query 169975 TATCAATTAGTTATCTTCCACTTCCTTATCGGAATCTCTGCCTACATGGGTAGACAGTGG 170034 ||| || || || | | |||||| | | || | || ||||||||| | ||||| Sbjct 437 TATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGG 378 Query 170035 GAACTATCATACCGTTTAGGTATGCGTCCTTGGAT 170069 ||||| | |||| | | |||||| |||||||| Sbjct 377 GAACTTAGTTTCCGTCTGGATATGCGCCCTTGGAT 343 >seq254652 Length=6058 Score = 95.1 bits (104), Expect = 1e-14 Identities = 162/234 (69%), Gaps = 1/234 (0%) Strand=Plus/Plus Query 169858 TATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCAC 169917 ||||| ||||| || || || |||| ||| |||| |||| | || | ||| | || Sbjct 711 TATGGAAACAATATTATTTCAGGTGTTGTTATTCCTACTTCTACAGCTACAGGTTTGCAT 770 Query 169918 TTCTATCCTATTTGGGAAGCAGCAACTCTAGATGAGTGGTTG-TATAACGGTGGTCCTTA 169976 || || | || | ||||||| || | | ||||| ||||| || || ||||||||||| Sbjct 771 TTTTACCTAATATAGGAAGCAACATTTGTTGATGAATGGTTTATACAATGGTGGTCCTTA 830 Query 169977 TCAATTAGTTATCTTCCACTTCCTTATCGGAATCTCTGCCTACATGGGTAGACAGTGGGA 170036 | || || || | | |||||| | | || | | ||||||||| | ||||||| Sbjct 831 TGAACTAATTGTACTACACTTCTTACTTGGTGTAGCGTGTTACATGGGTCGCGAGTGGGA 890 Query 170037 ACTATCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTAGCATATTCTGCTCC 170090 ||| | |||| | ||| |||| |||| ||| ||| |||||||| ||||| Sbjct 891 ACTTAGTTTCCGTCTGGGTGTGCGACCTTTGATTGTTGTTGCATATTCAGCTCC 944 >seq231965 Length=7494 Score = 82.4 bits (90), Expect = 9e-11 Identities = 120/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 170062 CCTTGGATCTGTGTAGCATATTCTGCTCCAGTGTCAGCAGCATTCGCTGTATTCTTAGTG 170121 |||||||| ||| |||||| | |||| || || | || | ||| ||||| | Sbjct 6582 CCTTGGATTATTGTTGCATATCCAGCTCTTGTTGCAACTGCGACTGATGTTTTCTTGATC 6641 Query 170122 TATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATGCCTCTAGGTATCTCAGGTACATTT 170181 || || | |||| || || || | || || |||||||| || | ||||| || Sbjct 6642 TACCCAATTTGTCAATGAAGCTTTTCTCATGGTATTCCTCTAGGAATTTATGGTACTTTC 6701 Query 170182 AACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCACCCATT 170231 ||||||||| | ||||| | | |||||||||||||||||||||||||| Sbjct 6702 AACTTCATGATTGTATTTAAGGTTGAGCACAACATTCTTATGCACCCATT 6751 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579468166446400