Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq156932 111 1e-19 seq25275 111 1e-19 seq228143 105 4e-18 seq62239 86.0 4e-12 seq284040 84.2 1e-11 >seq156932 Length=6713 Score = 111 bits (122), Expect = 1e-19 Identities = 166/232 (72%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 |||||||||||||||| || | || | || ||| ||||| ||||| || |||| | Sbjct 3757 CCTCCCCTCAACCTCAGCACAAGATGCAGGGTCGATTCCTTCTGGATGTTGTAATCCGCA 3816 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | || |||| |||||||||||||||||||| || |||| ||| |||||| | || Sbjct 3817 AGAGTCCGCCCATCTTCCAGCTGTTTTCCGGCAAAGATGAGTCTTTGTTGGTCTGGTGGG 3876 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT--TCACCG-GC-CTC 34930 | || |||||||| |||||| ||| || | | ||||| | ||| || ||| Sbjct 3877 ATTCCTTCCTTGTCTTGAATCTTGGCTTTCAC----GTTGTCGATGGTATCCGAGCTCTC 3932 Query 34931 AACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || | || || || || || ||||| || || || || ||||||||| Sbjct 3933 GACTTCCAAAGTGATCGTCTTCCCAGTGAGGGTTTTGACGAAAATCTGCATA 3984 >seq25275 Length=8276 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 |||| || ||||| | | |||||| |||| || ||| ||||||||||| ||||| | Sbjct 5703 TTCCACCTCTCAATCGAAGAACCAAATGAAGGGTCGATTCCTTCTGAATGTTGTAGTCAG 5644 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 ||| | || |||| || ||||| || || ||||| || || | ||||||||| | | Sbjct 5643 CAAGCGTACGACCATCCTCGAGCTGCTTACCCGCAAAGATCAGCCTCTGCTGGTCTGGTG 5584 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | |||||||| || |||||| || ||| | || | || | ||||| Sbjct 5583 GGATACCCTCCTTATCTTGAATCTTAGCCTTCACGTTGTCGATGGTGTCGGAGCTCTCAA 5524 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | |||| || ||||| ||||| || | |||||||||||||||||||| Sbjct 5523 CCTCGAGAGTGATGGTCTTTCCGGTCAATGTCTTCACAAAGATCTGCAT 5475 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || || ||||| | | |||||||||| || ||| ||||||||||| ||||| | | Sbjct 5473 CCACCTCTCAATCGAAGCACCAAGTGAAGGGTTGATTCCTTCTGAATGTTGTAGTCTGCA 5414 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | || |||| || ||||| || |||||||| || | || ||| |||||| | || Sbjct 5413 AGGGTACGGCCATCCTCAAGCTGCTTGCCGGCAAAGATCAATCTTTGTTGGTCTGGTGGG 5354 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | ||||| || || || ||| || ||| | || | || | |||||| Sbjct 5353 ATTCCCTCTTTATCTTGGATTTTCGCCTTCACGTTGTCGATGGTGTCGGAGCTCTCAACT 5294 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || | || ||||| ||||| || | |||||||||||||||||||||| Sbjct 5293 TCCAGTGTGATGGTCTTTCCGGTCAAAGTCTTCACAAAGATCTGCATA 5246 Score = 95.1 bits (104), Expect = 8e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||||||||| || || ||||| ||||||||||| | ||| | || | || || Sbjct 5000 AACCAAGTGAAGGGTTGACTCCTTCTGGATGTTATAGTCGGCAAGAGTACGGCCGTCCTC 4941 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 ||||| ||||||||||| || |||| ||||||||| | || | || |||||||| Sbjct 4940 GAGCTGCTTTCCGGCAAAGATCAGTCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCTTG 4881 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 ||| || || ||| | || | ||| | || || || | || |||||||| Sbjct 4880 AATTTTAGCCTTCACGTTGTCAATGGTGTCAGAGCTTTCGACCTCCAGCGTGATGGTTTT 4821 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || ||||| || || |||||||| ||||| Sbjct 4820 GCCGGTGAGGGTTTTGACAAAGATTTGCAT 4791 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/214 (70%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 |||||| |||| || || ||||| |||||||| |||| ||| | | | |||| || Sbjct 6140 AACCAAATGAAGGGTAGACTCCTTCTGGATGTTATAATCCGCAAGAGTCCTTCCATCCTC 6081 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 ||||| || || ||||| || || | ||||| || | || | |||||||||||| Sbjct 6080 AAGCTGCTTCCCAGCAAAAATCAGCCTCTGCTGATCCGGTGGGATCCCCTCCTTGTCCTG 6021 Query 34892 AATCTTCTGTTTGACGGATGCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGG 34947 ||||||| ||| || || | ||||| | ||| ||| || || | || |||| Sbjct 6020 AATCTTCGCTTTCAC--AT--TGTCGATCGTGTCCGAACTCTCCACCTCCAGCGTGATGG 5965 Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || || || | ||||| |||||||||||||| Sbjct 5964 TCTTCCCTGTCAACGTCTTAACAAAGATCTGCAT 5931 >seq228143 Length=6931 Score = 105 bits (116), Expect = 4e-18 Identities = 152/214 (71%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 ||||| || | ||| ||| ||||| ||||| ||||| | ||| |||| | || || Sbjct 2621 ACCAAATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCTGCGAGGGTTCGGCCGTCCTCG 2562 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 |||||||| |||||||| || |||| ||||||||| | || | || |||||||| Sbjct 2561 AGCTGTTTACCGGCAAAGATGAGTCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCTTGG 2502 Query 34893 ATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGT 34948 ||||| |||||| ||||||| || | ||| || || | || ||||| Sbjct 2501 ATCTTGGCCTTGACGT----TATCGATGGTGTCGGAGCTCTCGACCTCCAAAGTGATGGT 2446 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||| || ||||| ||||| || |||||||||||| Sbjct 2445 TTTCCCAGTGAGGGTCTTGACGAAGATCTGCATA 2412 Score = 102 bits (112), Expect = 5e-17 Identities = 154/215 (72%), Gaps = 12/215 (6%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG--AAAGGCTTCGTTCATCAT 34830 ||||| || | ||| ||| ||||| ||||| ||||| | |||| | || |||| | Sbjct 2393 ACCAAATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCTAAAG--TACGGCCATCTT 2336 Query 34831 CCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGC 34890 | ||||| ||||||||||| || || | |||||||||| | || | || |||||||| Sbjct 2335 CGAGCTGCTTTCCGGCAAAGATGAGCCTTTGCTGGTCTGGGGGAATGCCTTCCTTGTCTT 2276 Query 34891 TAATCTTCTGTTTGACGGATGCTATCGATT-CACCGG---CCTCAACATCGACGGTTATG 34946 ||||| ||||| | | |||||| ||| |||||| |||| || || Sbjct 2275 GGATCTTGGCCTTGAC----GTTGTCGATTGTGTCGGAACTCTCAACCTCGAGAGTGATT 2220 Query 34947 GTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || ||||| ||||| ||||| |||||||||||||| Sbjct 2219 GTCTTTCCAGTGAGGGTCTTAACAAAGATCTGCAT 2185 >seq62239 Length=9780 Score = 86.0 bits (94), Expect = 4e-12 Identities = 139/198 (70%), Gaps = 8/198 (4%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| | ||| | | | || || ||||| || ||||| || Sbjct 5367 TCCTTCTGGATGTTGTAGTCGGCTAGGGTCCTGCCGTCCTCGAGCTGCTTCCCGGCGAAG 5426 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || ||||||||||| |||| | || |||||||| ||||| ||||| || Sbjct 5427 ATGAGGCGTTGCTGGTCCGGCGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTGAC--AT 5484 Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | ||||| || || || || || | |||||||||||| || || || || || Sbjct 5485 --TGTCGATGGTGTCGGAGGATTCGACCTCTAGGGTTATGGTTTTCCCGGTTAGGGTTTT 5542 Query 34967 CACAAAGATCTGCATATT 34984 ||| ||||||||||| || Sbjct 5543 CACGAAGATCTGCATCTT 5560 >seq284040 Length=2693 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTC--CG 34812 ||||||||||||| || ||||| || | ||| || ||||| ||||| || || | Sbjct 985 CCTCCCCTCAACCGCAGAACCAGATGCAACGTGGACTCCTTCTGGATGTTGTAATCGGCC 926 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 |||| | | | | || || ||||| || ||||| || || | || |||||||| | | Sbjct 925 AAAG--TCCTTCCGTCTTCGAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCCGGTG 868 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | || |||||||| ||||||| || ||| | |||| || | || | Sbjct 867 GGATTCCTTCCTTGTCCTGAATCTTCGCCTTCACGTTATCGATCGTGTCGGAGCTTTCCA 808 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | || || |||||||| || | |||||||| ||||||||||| Sbjct 807 CCTCCAACGTGATCGTTTTTCCGGTCAACGTCTTCACGAAGATCTGCAT 759 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322798168900368