Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq107965 369 4e-97 seq169634 255 7e-63 seq300680 201 1e-46 seq250312 188 8e-43 seq10884 134 2e-26 seq254652 132 5e-26 seq8631 123 3e-23 seq36621 111 2e-19 >seq107965 Length=6474 Score = 369 bits (408), Expect = 4e-97 Identities = 438/594 (74%), Gaps = 0/594 (0%) Strand=Plus/Minus Query 84194 AGAACGACTATTGTTGAAGGAAGCATACTGGAAGATAAGACGACCGAAGTAGCCGTGAGC 84253 ||||||| |||||||| |||||| |||||||| | || || || || || ||| | Sbjct 6469 AGAACGAGAGTTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAAC 6410 Query 84254 AGCAACAATATTATAAGTTTCCTCTTCTTGACCGAACTTGTAACCATAGTTTTGTGAGAC 84313 || || |||||||||||||| |||||| |||| || ||||||| | || || Sbjct 6409 GGCTACGATATTATAAGTTTCATCTTCTAGACCAAATCTGTAACCTTCATTAGCAGATTT 6350 Query 84314 ATTTTCTGTAGTTTCTCGGATTAGAGAAGAAGTGACAAGTGAACCATGCATTGCAGAGAA 84373 ||||||||| ||||| | ||| | | |||| || || | ||||||||||| ||| ||| Sbjct 6349 ATTTTCTGTGGTTTCCCTGATCAAACAAGAGGTTACCAAGGAACCATGCATAGCACTGAA 6290 Query 84374 TAGAGCTCCACCGAATACACCAGCAACTCCCAACATGTGAAAGGGATGCATAAGGATGTT 84433 ||| | || |||| ||||||||| || || | ||||||||| || |||||||| ||||| Sbjct 6289 TAGGGAGCCGCCGATTACACCAGCTACACCTAGCATGTGAAATGGGTGCATAAGAATGTT 6230 Query 84434 ATGTTCCGCCTGGAAGACAAGCATGTAGTTGAACGTTCCTGAGATACCAAGTGGCATGCC 84493 || || |||||||| |||| |||| ||||||| || || || || || || ||||| || Sbjct 6229 GTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACC 6170 Query 84494 ATCAGAGAAAGAACCTTGCCCGAAAGGATACACAAGGAATACAGCAGATGCCGCTGCAAC 84553 |||||| || ||||| || | || || | | ||| ||| || || |||||||| Sbjct 6169 ATCAGAAAAGCTTCCTTGACCAATTGGGTAGATCAAGAAAACAACACTCGCAGCTGCAAC 6110 Query 84554 TGGAGCAGAGTAAGCAACACAGATCCATGGACGCATACCGAGACGATATGAAAGTTCCCA 84613 ||||| || || |||||| ||||| | |||||||| |||||| | ||||||||| Sbjct 6109 AGGAGCTGAATATGCAACAACCATCCAAGTTCGCATACCCAGACGAAAACTAAGTTCCCA 6050 Query 84614 TTCACGACCCATGTAAGCAAATGCACCAATCAGGAAGTGAAAGACAACAAGTTGATAAGG 84673 ||||||||||||||| | | |||||| | |||||| | |||| |||| |||||| Sbjct 6049 CTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGG 5990 Query 84674 TCCACCATTATATAGCCATTCGTCCATACTTGCTGCTTCCCAAATAGGATAGAAATGTAG 84733 |||||||| |||| |||||| || | | || ||||||||| || || || ||||| | Sbjct 5989 ACCACCATTGTATAACCATTCATCAACAGATGTTGCTTCCCATATTGGGTAAAAATGCAA 5930 Query 84734 ACCAATAGCATTAGAGGATGGAACTACGGCACCAGAAATGATGTTGTTTCCGTA 84787 ||| ||||| ||| |||| | || ||| |||| || |||||||| || Sbjct 5929 ACCTATAGCTGCAGAAATAGGAATAATGGTACCTAAAATAATATTGTTTCCATA 5876 >seq169634 Length=720 Score = 255 bits (282), Expect = 7e-63 Identities = 328/450 (73%), Gaps = 2/450 (0%) Strand=Plus/Plus Query 84480 CCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCCGAAAGGATACACAAGGAATACAGCA 84539 || || ||||| |||||||| || ||||| || | || || | | ||| |||||| Sbjct 2 CCTAGAGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCA 61 Query 84540 GATGCCGCTGCAACTGGAGCAGAGTAAGCAACACAGATCCATGGACGCATACCGAGACGA 84599 | ||| |||||||| | ||| || || |||||| ||||| || |||||||| ||||| Sbjct 62 GTTGCAGCTGCAACAGAAGCTGAATATGCAACAACAATCCAAGGTCGCATACCCAGACGG 121 Query 84600 TATGAAAGTTCCCATTCACGACCCATGTAAGCAAATGCACCAATCAGGAAGTGAAAGACA 84659 | ||||||||| ||||||||||||||| | | |||||| | |||||| | ||| Sbjct 122 AAACTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACA 181 Query 84660 ACAAGTTGATAAGGTCCACCATTATATAGCCATTCGTCCATACTTGCTGCTTCCCAAATA 84719 | |||| |||||| |||||||| |||| |||||| || | |||||||||||| || Sbjct 182 ATTAGTTCATAAGGACCACCATTGTATAACCATTCATCAACGGATGCTGCTTCCCATATT 241 Query 84720 GGATAGAAATGTAGACCAATAGCATTAGAGGATGGAACTACGGCACCAGAAATGATGTTG 84779 || || ||||| | ||| ||||| ||| | |||| | | |||| ||||| || ||| Sbjct 242 GGGTAAAAATGCAAACCTATAGCTGCAGAAGTAGGAATAATGACACCTGAAATAATATTG 301 Query 84780 TTTCCGTACATGAGAGAACCAGCGACTGGCTCACGGATACCGTCAATATCAACTGGGGGT 84839 ||||| || | ||||| ||| || || ||||| ||||| |||||||| ||||| || Sbjct 302 TTTCCATAACTTAGAGATCCATAAACAGGTTCACGAATACCATCAATATCCACTGGAGGA 361 Query 84840 GCACCAACGAATGCAATGATGAA-ACAGACAGTGGCAGCAAGTAGAGTTGGAATCATAAG 84898 ||| ||| ||| || || || || ||||| ||| || | | || || || ||||| | Sbjct 362 GCAGCAATGAAAGCGATAATAAATACAGA-AGTTGCGGTCAATAAGGTAGGGATCATCAA 420 Query 84899 AGTTCCAAACCAACCAACATAGATACGGTT 84928 | |||||||| |||| || | |||||| Sbjct 421 AACACCAAACCATCCAATGTAAAGACGGTT 450 >seq300680 Length=3790 Score = 201 bits (222), Expect = 1e-46 Identities = 237/318 (75%), Gaps = 2/318 (1%) Strand=Plus/Plus Query 84186 AAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGGAAGATAAGACGACCGAAGTAG 84245 || || | ||||||| |||||||| |||||||||||||| | || || || || Sbjct 354 AAATGTAAAGAACGAGAGTTGTTGAAACTAGCATACTGGAAGACCAATCGGCCAAAATAA 413 Query 84246 CCGTGAGCAGCAACAATATTATAAGTTTCCT-CTTCTTGACCGAACTTGTAACCATAGTT 84304 || ||||| || || ||||||||||||| || ||||||||||||| |||||||| | || Sbjct 414 CCATGAGCGGCTACGATATTATAAGTTTTCTTCTTCTTGACCGAATTTGTAACCTTCATT 473 Query 84305 TTGTGAGACATTTTCTGTAGTTTCTCGGATTAGAGAAGAAGTGACAAGTGAACCATGCAT 84364 | |||||||| | ||||| | ||||| | ||| || || | ||||||||||| Sbjct 474 AGCAAATTCATTTTCTCTGGTTTC-CTGATTAAACTAGAGGTTACCAAGGAACCATGCAT 532 Query 84365 TGCAGAGAATAGAGCTCCACCGAATACACCAGCAACTCCCAACATGTGAAAGGGATGCAT 84424 ||| ||||| | | ||| ||||||||| || | | ||||||||| || ||||| Sbjct 533 AGCATTAAATAGGGAGCTGACGAGTACACCAGCTACGCTTAGCATGTGAAATGGGTGCAT 592 Query 84425 AAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTTGAACGTTCCTGAGATACCAAG 84484 ||| ||||| || || ||||||| |||| |||| ||||||| || || || || || || Sbjct 593 AAGAATGTTGTGCTCAACCTGGAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAG 652 Query 84485 TGGCATGCCATCAGAGAA 84502 ||||| |||||||| || Sbjct 653 AGGCATACCATCAGAAAA 670 >seq250312 Length=8481 Score = 188 bits (208), Expect = 8e-43 Identities = 314/455 (69%), Gaps = 9/455 (2%) Strand=Plus/Minus Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044 ||||| ||||| || |||| ||| | ||| |||||||||||||| |||| |||| Sbjct 2019 GGGAAATTATGAGCATTACATTCATACATAACTTCCATACCAAGGTTAGCACAGTTAATG 1960 Query 84045 ACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTA 84104 | ||| ||||| ||||| | ||| | ||| || ||||| | | |||| ||| || Sbjct 1959 ATATCAGCCCAAGTATTAATTACATGACATTGACTGTCGACTACAGATTGATGGAAACTA 1900 Query 84105 AATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACC 84164 || ||||| || || | ||||| ||||| | ||| | || |||||| || Sbjct 1899 AAACCATTTAGGTTGTAAGCCATAGTGCTGATACCTAACACAATAAACCAGATA------ 1846 Query 84165 ACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGG 84224 ||||||| ||| | ||| || || | | |||| |||||||| ||||| || Sbjct 1845 ---GGCCAAGTAGCTAGGAAGAAATGTAAAAAACGTGAGTTGTTGAAACTAGCATGTCGG 1789 Query 84225 AAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGA 84284 ||||| | ||||| || || || ||||| || |||||||| ||| |||| |||||||| Sbjct 1788 AAGATCAATCGACCAAAATAACCATGAGCGGCTACAATATTCTAATTTTCTCCTTCTTGA 1729 Query 84285 CCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAGAGAAGAA 84344 ||||| | ||||| | || | | |||| | ||| ||||| | ||| | | || Sbjct 1728 CCGAATATATAACCTTCATTAGCTTATTCATTCTTTGTGGTTTCCCTGATCAAACTAGGG 1669 Query 84345 GTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACTCCC 84404 || || | |||||| |||| ||| |||||| | | || | ||||||||| || || Sbjct 1668 GTTACCAAGGAACCACGCATAGCACTGAATAGGGAGCTGCCAATTACACCAGCTACGCCT 1609 Query 84405 AACATGTGAAAGGGATGCATAAGGATGTTATGTTC 84439 | ||||||||| | ||| |||| ||||| || || Sbjct 1608 AGCATGTGAAATGAGTGCCTAAGAATGTTGTGCTC 1574 >seq10884 Length=5042 Score = 134 bits (148), Expect = 2e-26 Identities = 119/149 (80%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 84354 GAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACTCCCAACATGTGA 84413 |||||||| || ||| |||||| | || |||||||||||||| || || | ||||||| Sbjct 3937 GAACCATGTATAGCAATGAATAGGGAGCCGCCGAATACACCAGCTACGCCTAGCATGTGA 3878 Query 84414 AAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTTGAACGTTCCT 84473 || || |||||||| ||||| || || |||||||| |||| |||| ||||||| || || Sbjct 3877 AATGGGTGCATAAGAATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCA 3818 Query 84474 GAGATACCAAGTGGCATGCCATCAGAGAA 84502 || || || || ||||| |||||||| || Sbjct 3817 GAAATTCCTAGAGGCATACCATCAGAAAA 3789 >seq254652 Length=6058 Score = 132 bits (146), Expect = 5e-26 Identities = 203/288 (70%), Gaps = 1/288 (0%) Strand=Plus/Minus Query 84543 GCCGCTGCAACTGGAGCAGAGTAAGCAACACAGATCCATGGACGCATACCGAGACGATAT 84602 || |||| || ||||| || || |||||| ||| | || |||| ||| ||||| | Sbjct 956 GCAGCTGTAATAGGAGCTGAATATGCAACAACAATCAAAGGTCGCACACCCAGACGGAAA 897 Query 84603 GAAAGTTCCCATTCACGACCCATGTAAGCAAATGCACCAATCAGGAAGTGAAAGACAACA 84662 ||||||||| || |||||||||||| | |||||| | |||||| | |||| Sbjct 896 CTAAGTTCCCACTCGCGACCCATGTAACACGCTACACCAAGTAAGAAGTGTAGTACAATT 837 Query 84663 AGTTGATAAGGTCCACCATTATAT-AGCCATTCGTCCATACTTGCTGCTTCCCAAATAGG 84721 |||| |||||| |||||||| ||| | |||||| || | | || ||||||| | || | Sbjct 836 AGTTCATAAGGACCACCATTGTATAAACCATTCATCAACAAATGTTGCTTCCTATATTAG 777 Query 84722 ATAGAAATGTAGACCAATAGCATTAGAGGATGGAACTACGGCACCAGAAATGATGTTGTT 84781 || ||||| | ||| |||| |||| | |||| || |||| ||||| || ||||| Sbjct 776 GTAAAAATGCAAACCTGTAGCTGTAGAAGTAGGAATAACAACACCTGAAATAATATTGTT 717 Query 84782 TCCGTACATGAGAGAACCAGCGACTGGCTCACGGATACCGTCAATATC 84829 ||| || | ||||| | | || ||| | ||||| |||||||| Sbjct 716 TCCATAAAGTAGAGATGTAAAAATAGGTTCATGAATACCATCAATATC 669 >seq8631 Length=609 Score = 123 bits (136), Expect = 3e-23 Identities = 119/150 (79%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 84349 CAAGTGAACCATGCATTGCAGAGAAT-AGAGCTCCACCGAATACACCAGCAACTCCCAAC 84407 |||| ||||||||||| ||| |||| || | || |||||||||||||| || | | | Sbjct 182 CAAG-GAACCATGCATAGCACTGAATTAGGGAGCCGCCGAATACACCAGCTACGTCTAGC 240 Query 84408 ATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTTGAAC 84467 |||||||| || |||||||| ||||| || || |||||||| |||| |||| ||||||| Sbjct 241 ATGTGAAATGGGTGCATAAGAATGTTGTGCTCGGCCTGGAATACAATCATGAAGTTGAAA 300 Query 84468 GTTCCTGAGATACCAAGTGGCATGCCATCA 84497 || || || || || || ||||| |||||| Sbjct 301 GTACCAGAAATTCCTAGAGGCATACCATCA 330 Score = 118 bits (130), Expect = 1e-21 Identities = 119/155 (77%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 84576 ATCCATGGACGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCATGTAAGCAAAT 84635 ||||| || |||||| | ||||| | ||||||||| ||||||||||||||| | | Sbjct 343 ATCCAAGGGCGCATATCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAACAAGCT 402 Query 84636 GCACCAATCAGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTATATAGCCATTCG 84695 |||||| | |||||| | |||| |||| |||||| |||||||| |||| |||||| Sbjct 403 ACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCATTGTATAACCATTCA 462 Query 84696 TCCATACTTGCTGCTTCCCAAATAGGATAGAAATG 84730 || || |||||||||||| || || || ||||| Sbjct 463 TCAATGGATGCTGCTTCCCATATTGGGTAAAAATG 497 >seq36621 Length=13842 Score = 111 bits (122), Expect = 2e-19 Identities = 204/294 (69%), Gaps = 4/294 (1%) Strand=Plus/Plus Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044 ||||| ||||| || |||||||| ||||| || | |||| |||| ||| | ||| Sbjct 7678 GGGAA-TTATGAGCATTACGTTCATGCATAACATTCATAACAAGGTTAGCATGGTTACTG 7736 Query 84045 ACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAG-ACTCTGATTGAAGTT 84103 | ||| | || ||||| | |||||| | || ||||| || | | | | || | || Sbjct 7737 ATATCACCTCAAGTATTCATTACACGGCTGTGACTATCAACTACCAATTGGTTTCGATTT 7796 Query 84104 AAATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAAC 84163 || ||||| || || || ||||| ||||| ||||| |||| ||||| || |||| Sbjct 7797 CAA-CCATTTAGGTTGAAAGCCATAATGCTAGTACCCAACGCAGTGAACCATATACCAAA 7855 Query 84164 CACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTG 84223 || ||||||||||| | ||||| | | | || || | |||||| |||||| | Sbjct 7856 AACAGGCCAAGCAGCTAGAAAAAAATATATAAAATGAGAGTCGTTGAAACTAGCATATTA 7915 Query 84224 GAAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTC 84277 |||||| | | | | || || || |||||| || |||||||||||||| || Sbjct 7916 GAAGATCA-ATCAGCCAAATAACCATGAGCATATACGATATTATAAGTTTCTTC 7968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567960884366480