Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27]
463,906 sequences; 661,937,708 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq180108 104 3e-17
seq161111 96.9 4e-15
>seq180108
Length=14591
Score = 104 bits (114), Expect = 3e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 48600 GTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTA 48659
||||| | ||| || | || ||||| |||||| | ||||| ||| ||| | ||| | |
Sbjct 8717 GTTCCAGCATTGAAGAGGGTGGGAGAAGCATGAGTGAACCACCTCTGTGACATCAAGTGA 8776
Query 48660 TATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAAC 48719
|| || ||||||||||| |||| | ||| || || | | || | ||| | |
Sbjct 8777 TAAGTCCTGATAACAGAATCAATATTATCCTTATGAATCCCAACTGCAACCCTCATCAGC 8836
Query 48720 ATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAAT 48779
|||| |||||| |||||||||| ||| | || ||||| ||||| ||| | || |
Sbjct 8837 ATATGTTGAGGCCTTTCAACAACTTTCCCTTGGATCTTCAATAGATAAGATCTCTCAAGG 8896
Query 48780 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCATTAATAAT 48826
||||||||||||||||| | || |||||| | |||| |||||
Sbjct 8897 GTTTTAAAACCAAAATAATCATAGTCAAAGTCCCTGTCATATATAAT 8943
>seq161111
Length=12134
Score = 96.9 bits (106), Expect = 4e-15
Identities = 142/200 (71%), Gaps = 6/200 (3%)
Strand=Plus/Minus
Query 48600 GTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTA 48659
||||| | ||| || | || ||||| |||||| | ||||| ||| ||| | ||| | |
Sbjct 4895 GTTCCAGCATTGAAGAGGGTGGGAGAAGCATGAGTGAACCACCTCTGTGACATCAAGTGA 4836
Query 48660 TATGTTTCAATAACAGAATCTAT---ATCCCATTGATGTATACCTATAGATACACGCATT 48716
|| || || |||||||| || |||| | ||| || || | || || | |||
Sbjct 4835 TAAGTCCTGATTACAGAATCGATGTTATCC---TTATGAATTCCAACTGAAACCCTCATC 4779
Query 48717 AACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCC 48776
| ||||| |||||| |||||||||| ||| | || ||||| ||||| ||| | ||
Sbjct 4778 AGCATATGTTGAGGCCTTTCAACAACTTTCCCTTGGATCTTCAATAGATAAGATCTCTCA 4719
Query 48777 AATGTTTTAAAACCAAAATA 48796
| |||||||||||||||||
Sbjct 4718 AGGGTTTTAAAACCAAAATA 4699
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 558849229437840
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |