Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_016656.1 Length=45890 Score E Sequences producing significant alignments: (Bits) Value seq107965 215 1e-51 seq169634 176 1e-39 seq250312 141 3e-29 seq300680 127 6e-25 seq36621 118 3e-22 seq10884 107 6e-19 seq8631 100 8e-17 >seq107965 Length=6474 Score = 215 bits (238), Expect = 1e-51 Identities = 410/598 (69%), Gaps = 8/598 (1%) Strand=Plus/Plus Query 25970 TACGGAAACAATATAATATCAGG-AGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACA 26028 || ||||||||||| || | ||| | || | ||| | ||| || || || | || Sbjct 5876 TATGGAAACAATATTATTTTAGGTACCATTATTCCTATT-TCTGCAGCTATAGGTTTGCA 5934 Query 26029 TTTTTACCCGATCTGGGAAGCTGGCACA-CTG--GACGAGTGGCTATACAATGGCGGACC 26085 ||||||||| || |||||||| ||| ||| || || ||| |||||||||| || || Sbjct 5935 TTTTTACCCAATATGGGAAGCA---ACATCTGTTGATGAATGGTTATACAATGGTGGTCC 5991 Query 26086 ATATCAACTCATTATCTTCCACTTCTTAATAGGAGTAGCAGCATATGCAGGGAGACAGTG 26145 ||| |||| ||| | | ||||||||| | || ||||| || || | |||| Sbjct 5992 TTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTG 6051 Query 26146 GGAACTATCTTACAGACTAGGAATGAGACCATGGATATTTGTTGCATATACAGCACCACT 26205 |||||| || | || || ||| || | ||||| ||||||||||| |||| || | Sbjct 6052 GGAACTTAGTTTTCGTCTGGGTATGCGAACTTGGATGGTTGTTGCATATTCAGCTCCTGT 6111 Query 26206 ATCCGCAGCTCTCGCAGTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGG 26265 | || || | || ||||| | || || | || ||||| || ||| |||||| Sbjct 6112 TGCAGCTGCGAGTGTTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGG 6171 Query 26266 AATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACATAA 26325 |||||||| || || ||||||||||| ||||| ||| | |||||||| || || || || Sbjct 6172 TATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAA 6231 Query 26326 TATACTCATGCACCCATTCCATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCTTTT 26385 || || ||||||||||| || ||| ||||| ||||| || |||| || | || || Sbjct 6232 CATTCTTATGCACCCATTTCACATGCTAGGTGTAGCTGGTGTAATCGGCGGCTCCCTATT 6291 Query 26386 CGCTGCTATGCACGGAAGTTTGGTTACTTCCTCACTTATTGCAGAAACGACAGAGGAAGT 26445 | ||||||||| || ||||| || || | | || ||||| ||||| | Sbjct 6292 CAGTGCTATGCATGGTTCCTTGGTAACCTCTTGTTTGATCAGGGAAACCACAGAAAATAA 6351 Query 26446 CTCACAGAATTATGGCTATAAGTTTGGGCAAGATGAAGAGACATATAATATTGTCGCTGC 26505 || ||| | || || | ||||| | ||| || || || |||||||| || || | Sbjct 6352 ATCTGCTAATGAAGGTTACAGATTTGGTCTAGAAGATGAAACTTATAATATCGTAGCCGT 6411 Query 26506 ACACGGGTACTTTGGGAGATTAATTTTTCAGTATGCGAGTTTTAATAACAGCCGTTCT 26563 || || || ||||| |||| || || || ||||| ||||| || ||| |||||| Sbjct 6412 TCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCT 6469 >seq169634 Length=720 Score = 176 bits (194), Expect = 1e-39 Identities = 316/459 (69%), Gaps = 2/459 (0%) Strand=Plus/Minus Query 25820 AGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTTATGATACCCTGCTTACTC 25879 ||||| || |||||||| || | |||||||| || || | ||||| || |||| | Sbjct 459 AGTACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTG 400 Query 25880 GCAGCCACTACATGT-TTTATACTTGCCTTCATCGCAGCACCGCCTGTAGATATAGATGG 25938 | || ||| | ||| ||||| | || ||||| || || || || || ||||| ||||| Sbjct 399 ACCGCAACTTC-TGTATTTATTATCGCTTTCATTGCTGCTCCTCCAGTGGATATTGATGG 341 Query 25939 CATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATAATATCAGGAGCAGT 25998 || ||||| || |||| || || ||| || ||||||||||| || ||||| | | Sbjct 340 TATTCGTGAACCTGTTTATGGATCTCTAAGTTATGGAAACAATATTATTTCAGGTGTCAT 281 Query 25999 CGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGATCTGGGAAGCTGGCACACT 26058 | || | ||| || || || | ||||||||||| || |||||||| | | | Sbjct 280 TATTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCAATATGGGAAGCAGCATCCGT 221 Query 26059 GGACGAGTGGCTATACAATGGCGGACCATATCAACTCATTATCTTCCACTTCTTAATAGG 26118 || || ||| |||||||||| || || ||| |||| ||| | | ||||||||| | || Sbjct 220 TGATGAATGGTTATACAATGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGG 161 Query 26119 AGTAGCAGCATATGCAGGGAGACAGTGGGAACTATCTTACAGACTAGGAATGAGACCATG 26178 ||||| || || | |||||||||| || | | || || ||| |||| || Sbjct 160 TGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGACCTTG 101 Query 26179 GATATTTGTTGCATATACAGCACCACTATCCGCAGCTCTCGCAGTGTTCTTAGTTTATCC 26238 ||| ||||||||||| |||| | | | || || || || ||||| | || || Sbjct 100 GATTGTTGTTGCATATTCAGCTTCTGTTGCAGCTGCAACTGCTGTTTTCTTGATCTACCC 41 Query 26239 TTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGG 26277 | || ||||| || ||| |||||| |||||||| || Sbjct 40 AATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGG 2 >seq250312 Length=8481 Score = 141 bits (156), Expect = 3e-29 Identities = 231/328 (70%), Gaps = 11/328 (3%) Strand=Plus/Plus Query 26453 AATTATGGCTATAAGTTTGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGG 26512 ||| | || |||| || || ||||| | ||| | || |||||||| || || || || Sbjct 1709 AATGAAGGTTATATATTCGGTCAAGAAGGAGAAAATTAGAATATTGTAGCCGCTCATGGT 1768 Query 26513 TACTTTGGGAGATTAATTTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTC 26572 || ||||| |||| || || | |||| ||||| || ||| |||| | | |||||| Sbjct 1769 TATTTTGGTCGATTGATCTTCCGACATGCTAGTTTCAACAACTCACGTTTTTTACATTTC 1828 Query 26573 TTTCTTGCTACTTGGCCGGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAATG 26632 || || ||||||||||| | ||| ||| | | | | |||||| |||| ||| Sbjct 1829 TTCCTAGCTACTTGGCCTATC--TGGTTTATTG------TGT-TAGGTATCAGCACTATG 1879 Query 26633 GCATTTAACCTAAATGGTTTTAACTTTAACCAGTCAGTAGTAGAT-GTTAATGGAAAGAT 26691 || | |||||||||||||||| || | || || ||||| || || |||| | | | Sbjct 1880 GCTTACAACCTAAATGGTTTTAGTTTCCATCAATCTGTAGTCGACAGTCAATGTCATG-T 1938 Query 26692 AATACCTACATGGGCTGATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCACGA 26751 ||| ||| ||||||||| | | ||| | |||||||| || | ||||||||| | || Sbjct 1939 AATTAATACTTGGGCTGATATCATTAACTGTGCTAACCTTGGTATGGAAGTTATGTATGA 1998 Query 26752 GCGTAATGCTCATAACTTTCCACTTGAC 26779 ||||||||||||| || || || ||| Sbjct 1999 ATGTAATGCTCATAATTTCCCTCTAGAC 2026 >seq300680 Length=3790 Score = 127 bits (140), Expect = 6e-25 Identities = 223/322 (69%), Gaps = 2/322 (1%) Strand=Plus/Minus Query 26252 AGTTTTAGTGATGGAATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTC 26311 || ||| |||||| |||||||| || || ||||||||||| ||||| ||| | |||||| Sbjct 673 AGCTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTC 614 Query 26312 CAAGCAGAACATAATATACTCATGCACCCATTCCATATGGCTGGTGTTGCTGGGGTTTTC 26371 || | || || || || || ||||||||||| || ||| | || ||||| || || Sbjct 613 CAGGTTGAGCACAACATTCTTATGCACCCATTTCACATGCTAAGCGTAGCTGGTGTACTC 554 Query 26372 GGTGGAGCTCTTTTCGCTGCTATGCACGGAAGTTTGGTTACTTCCTCACTTATTGCAGAA 26431 | | | || || ||||||||| || ||||| || | || ||| | ||| Sbjct 553 GTCAGCTCCCTATTTAATGCTATGCATGGTTCCTTGGTAACCT-CTAGTTTAATCAGGAA 495 Query 26432 ACGACAGAGGAAGTCTCACAGAATTATGGCTATAAGTTTGGGCAAGATGAAG-AGACATA 26490 || | ||| | | | ||| | || || || || || ||||| |||| | || || Sbjct 494 ACCAGAGAAAATGAATTTGCTAATGAAGGTTACAAATTCGGTCAAGAAGAAGAAAACTTA 435 Query 26491 TAATATTGTCGCTGCACACGGGTACTTTGGGAGATTAATTTTTCAGTATGCGAGTTTTAA 26550 |||||| || || || || || || ||||| |||| | || |||||||| ||||| || Sbjct 434 TAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGGTCTTCCAGTATGCTAGTTTCAA 375 Query 26551 TAACAGCCGTTCTCTTCATTTC 26572 ||| |||||| | |||||| Sbjct 374 CAACTCTCGTTCTTTACATTTC 353 >seq36621 Length=13842 Score = 118 bits (130), Expect = 3e-22 Identities = 212/306 (69%), Gaps = 3/306 (1%) Strand=Plus/Minus Query 26480 GAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTAATTTTTCAGTAT 26539 ||||| || |||||||| || ||| || || || ||||| |||| || || | ||| Sbjct 7968 GAAGAAACTTATAATATCGTATATGCTCATGGTTA-TTTGGCTGATTGATCTTCTAATAT 7910 Query 26540 GCGAGTTTTAATAACAGCCGTTCTCTTCATTTCTTTCTTGCTACTTGGCCGGTTGTTGGC 26599 || ||||| || || | || | | |||| ||||| ||| ||||||| ||| |||| Sbjct 7909 GCTAGTTTCAACGACTCTCATTTTATATATTTTTTTCTAGCTGCTTGGCCTGTTTTTGGT 7850 Query 26600 ATATGGCTGACATCTATGGGTATCTGCACAATGGCATTTAACCTAAATGGTTTTAACTTT 26659 |||||| | || | |||||| ||| ||||| || ||||||||||||| || Sbjct 7849 ATATGGTTCACTGCGTTGGGTACTAGCATTATGGCTTTCAACCTAAATGGTTGAAATCGA 7790 Query 26660 AACCAGTCAGTAGTAGATGTTAATGGAAAGATAATACCTACATGGGCTGATGTATTAAAC 26719 ||||| | ||||| ||| | | | |||| ||| || | |||| | ||| Sbjct 7789 AACCAATTGGTAGTTGATAGTCACAGCCGTGTAATGAATACTTGAGGTGATATCAGTAAC 7730 Query 26720 CGAGCTAACCTCGGCTTTGAA-GTTATGCACGAGCGTAATGCTCATAACTTTCCACTTGA 26778 | |||||||| | | |||| |||||||| || |||||||||||||| | || || || Sbjct 7729 CATGCTAACCT-TGTTATGAATGTTATGCATGAACGTAATGCTCATAATTCCCCTCTAGA 7671 Query 26779 CTTAGC 26784 ||| || Sbjct 7670 CTTGGC 7665 >seq10884 Length=5042 Score = 107 bits (118), Expect = 6e-19 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 26252 AGTTTTAGTGATGGAATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTC 26311 || ||| |||||| |||||||| || || ||||||||||| ||||| ||| | |||||| Sbjct 3786 AGCTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTC 3845 Query 26312 CAAGCAGAACATAATATACTCATGCACCCATTCCATATGGCTGGTGTTGCTGGGGTTTTC 26371 || || || || || || || ||||||||||| || ||| || || ||||| || ||| Sbjct 3846 CAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGCTAGGCGTAGCTGGTGTATTC 3905 Query 26372 GGTGGAGCTCTTTTCGCTGCTATGCACGG 26400 || || | || ||| |||||| || || Sbjct 3906 GGCGGCTCCCTATTCATTGCTATACATGG 3934 >seq8631 Length=609 Score = 100 bits (110), Expect = 8e-17 Identities = 113/150 (75%), Gaps = 1/150 (1%) Strand=Plus/Minus Query 26252 AGTTTTAGTGATGGAATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTC 26311 || ||| |||||| |||||||| || || ||||||||||| ||||| ||| | |||||| Sbjct 338 AGCTTTTTTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTC 279 Query 26312 CAAGCAGAACATAATATACTCATGCACCCATTCCATATGGCTGGTGTTGCTGGGGTTTTC 26371 || || || || || || || ||||||||||| || ||| | || ||||| || ||| Sbjct 278 CAGGCCGAGCACAACATTCTTATGCACCCATTTCACATGCTAGACGTAGCTGGTGTATTC 219 Query 26372 GGTGGAGCTCT-TTTCGCTGCTATGCACGG 26400 || || | || ||| ||||||||| || Sbjct 218 GGCGGCTCCCTAATTCAGTGCTATGCATGG 189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145918101319344