Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27]
463,906 sequences; 661,937,708 total letters
Query= NC_016656.1
Length=45890
Score E
Sequences producing significant alignments: (Bits) Value
seq107965 215 1e-51
seq169634 176 1e-39
seq250312 141 3e-29
seq300680 127 6e-25
seq36621 118 3e-22
seq10884 107 6e-19
seq8631 100 8e-17
>seq107965
Length=6474
Score = 215 bits (238), Expect = 1e-51
Identities = 410/598 (69%), Gaps = 8/598 (1%)
Strand=Plus/Plus
Query 25970 TACGGAAACAATATAATATCAGG-AGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACA 26028
|| ||||||||||| || | ||| | || | ||| | ||| || || || | ||
Sbjct 5876 TATGGAAACAATATTATTTTAGGTACCATTATTCCTATT-TCTGCAGCTATAGGTTTGCA 5934
Query 26029 TTTTTACCCGATCTGGGAAGCTGGCACA-CTG--GACGAGTGGCTATACAATGGCGGACC 26085
||||||||| || |||||||| ||| ||| || || ||| |||||||||| || ||
Sbjct 5935 TTTTTACCCAATATGGGAAGCA---ACATCTGTTGATGAATGGTTATACAATGGTGGTCC 5991
Query 26086 ATATCAACTCATTATCTTCCACTTCTTAATAGGAGTAGCAGCATATGCAGGGAGACAGTG 26145
||| |||| ||| | | ||||||||| | || ||||| || || | ||||
Sbjct 5992 TTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTG 6051
Query 26146 GGAACTATCTTACAGACTAGGAATGAGACCATGGATATTTGTTGCATATACAGCACCACT 26205
|||||| || | || || ||| || | ||||| ||||||||||| |||| || |
Sbjct 6052 GGAACTTAGTTTTCGTCTGGGTATGCGAACTTGGATGGTTGTTGCATATTCAGCTCCTGT 6111
Query 26206 ATCCGCAGCTCTCGCAGTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGG 26265
| || || | || ||||| | || || | || ||||| || ||| ||||||
Sbjct 6112 TGCAGCTGCGAGTGTTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGG 6171
Query 26266 AATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACATAA 26325
|||||||| || || ||||||||||| ||||| ||| | |||||||| || || || ||
Sbjct 6172 TATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAA 6231
Query 26326 TATACTCATGCACCCATTCCATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCTTTT 26385
|| || ||||||||||| || ||| ||||| ||||| || |||| || | || ||
Sbjct 6232 CATTCTTATGCACCCATTTCACATGCTAGGTGTAGCTGGTGTAATCGGCGGCTCCCTATT 6291
Query 26386 CGCTGCTATGCACGGAAGTTTGGTTACTTCCTCACTTATTGCAGAAACGACAGAGGAAGT 26445
| ||||||||| || ||||| || || | | || ||||| ||||| |
Sbjct 6292 CAGTGCTATGCATGGTTCCTTGGTAACCTCTTGTTTGATCAGGGAAACCACAGAAAATAA 6351
Query 26446 CTCACAGAATTATGGCTATAAGTTTGGGCAAGATGAAGAGACATATAATATTGTCGCTGC 26505
|| ||| | || || | ||||| | ||| || || || |||||||| || || |
Sbjct 6352 ATCTGCTAATGAAGGTTACAGATTTGGTCTAGAAGATGAAACTTATAATATCGTAGCCGT 6411
Query 26506 ACACGGGTACTTTGGGAGATTAATTTTTCAGTATGCGAGTTTTAATAACAGCCGTTCT 26563
|| || || ||||| |||| || || || ||||| ||||| || ||| ||||||
Sbjct 6412 TCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCT 6469
>seq169634
Length=720
Score = 176 bits (194), Expect = 1e-39
Identities = 316/459 (69%), Gaps = 2/459 (0%)
Strand=Plus/Minus
Query 25820 AGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTTATGATACCCTGCTTACTC 25879
||||| || |||||||| || | |||||||| || || | ||||| || |||| |
Sbjct 459 AGTACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTG 400
Query 25880 GCAGCCACTACATGT-TTTATACTTGCCTTCATCGCAGCACCGCCTGTAGATATAGATGG 25938
| || ||| | ||| ||||| | || ||||| || || || || || ||||| |||||
Sbjct 399 ACCGCAACTTC-TGTATTTATTATCGCTTTCATTGCTGCTCCTCCAGTGGATATTGATGG 341
Query 25939 CATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATAATATCAGGAGCAGT 25998
|| ||||| || |||| || || ||| || ||||||||||| || ||||| | |
Sbjct 340 TATTCGTGAACCTGTTTATGGATCTCTAAGTTATGGAAACAATATTATTTCAGGTGTCAT 281
Query 25999 CGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGATCTGGGAAGCTGGCACACT 26058
| || | ||| || || || | ||||||||||| || |||||||| | | |
Sbjct 280 TATTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCAATATGGGAAGCAGCATCCGT 221
Query 26059 GGACGAGTGGCTATACAATGGCGGACCATATCAACTCATTATCTTCCACTTCTTAATAGG 26118
|| || ||| |||||||||| || || ||| |||| ||| | | ||||||||| | ||
Sbjct 220 TGATGAATGGTTATACAATGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGG 161
Query 26119 AGTAGCAGCATATGCAGGGAGACAGTGGGAACTATCTTACAGACTAGGAATGAGACCATG 26178
||||| || || | |||||||||| || | | || || ||| |||| ||
Sbjct 160 TGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGACCTTG 101
Query 26179 GATATTTGTTGCATATACAGCACCACTATCCGCAGCTCTCGCAGTGTTCTTAGTTTATCC 26238
||| ||||||||||| |||| | | | || || || || ||||| | || ||
Sbjct 100 GATTGTTGTTGCATATTCAGCTTCTGTTGCAGCTGCAACTGCTGTTTTCTTGATCTACCC 41
Query 26239 TTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGG 26277
| || ||||| || ||| |||||| |||||||| ||
Sbjct 40 AATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGG 2
>seq250312
Length=8481
Score = 141 bits (156), Expect = 3e-29
Identities = 231/328 (70%), Gaps = 11/328 (3%)
Strand=Plus/Plus
Query 26453 AATTATGGCTATAAGTTTGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGG 26512
||| | || |||| || || ||||| | ||| | || |||||||| || || || ||
Sbjct 1709 AATGAAGGTTATATATTCGGTCAAGAAGGAGAAAATTAGAATATTGTAGCCGCTCATGGT 1768
Query 26513 TACTTTGGGAGATTAATTTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTC 26572
|| ||||| |||| || || | |||| ||||| || ||| |||| | | ||||||
Sbjct 1769 TATTTTGGTCGATTGATCTTCCGACATGCTAGTTTCAACAACTCACGTTTTTTACATTTC 1828
Query 26573 TTTCTTGCTACTTGGCCGGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAATG 26632
|| || ||||||||||| | ||| ||| | | | | |||||| |||| |||
Sbjct 1829 TTCCTAGCTACTTGGCCTATC--TGGTTTATTG------TGT-TAGGTATCAGCACTATG 1879
Query 26633 GCATTTAACCTAAATGGTTTTAACTTTAACCAGTCAGTAGTAGAT-GTTAATGGAAAGAT 26691
|| | |||||||||||||||| || | || || ||||| || || |||| | | |
Sbjct 1880 GCTTACAACCTAAATGGTTTTAGTTTCCATCAATCTGTAGTCGACAGTCAATGTCATG-T 1938
Query 26692 AATACCTACATGGGCTGATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCACGA 26751
||| ||| ||||||||| | | ||| | |||||||| || | ||||||||| | ||
Sbjct 1939 AATTAATACTTGGGCTGATATCATTAACTGTGCTAACCTTGGTATGGAAGTTATGTATGA 1998
Query 26752 GCGTAATGCTCATAACTTTCCACTTGAC 26779
||||||||||||| || || || |||
Sbjct 1999 ATGTAATGCTCATAATTTCCCTCTAGAC 2026
>seq300680
Length=3790
Score = 127 bits (140), Expect = 6e-25
Identities = 223/322 (69%), Gaps = 2/322 (1%)
Strand=Plus/Minus
Query 26252 AGTTTTAGTGATGGAATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTC 26311
|| ||| |||||| |||||||| || || ||||||||||| ||||| ||| | ||||||
Sbjct 673 AGCTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTC 614
Query 26312 CAAGCAGAACATAATATACTCATGCACCCATTCCATATGGCTGGTGTTGCTGGGGTTTTC 26371
|| | || || || || || ||||||||||| || ||| | || ||||| || ||
Sbjct 613 CAGGTTGAGCACAACATTCTTATGCACCCATTTCACATGCTAAGCGTAGCTGGTGTACTC 554
Query 26372 GGTGGAGCTCTTTTCGCTGCTATGCACGGAAGTTTGGTTACTTCCTCACTTATTGCAGAA 26431
| | | || || ||||||||| || ||||| || | || ||| | |||
Sbjct 553 GTCAGCTCCCTATTTAATGCTATGCATGGTTCCTTGGTAACCT-CTAGTTTAATCAGGAA 495
Query 26432 ACGACAGAGGAAGTCTCACAGAATTATGGCTATAAGTTTGGGCAAGATGAAG-AGACATA 26490
|| | ||| | | | ||| | || || || || || ||||| |||| | || ||
Sbjct 494 ACCAGAGAAAATGAATTTGCTAATGAAGGTTACAAATTCGGTCAAGAAGAAGAAAACTTA 435
Query 26491 TAATATTGTCGCTGCACACGGGTACTTTGGGAGATTAATTTTTCAGTATGCGAGTTTTAA 26550
|||||| || || || || || || ||||| |||| | || |||||||| ||||| ||
Sbjct 434 TAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGGTCTTCCAGTATGCTAGTTTCAA 375
Query 26551 TAACAGCCGTTCTCTTCATTTC 26572
||| |||||| | ||||||
Sbjct 374 CAACTCTCGTTCTTTACATTTC 353
>seq36621
Length=13842
Score = 118 bits (130), Expect = 3e-22
Identities = 212/306 (69%), Gaps = 3/306 (1%)
Strand=Plus/Minus
Query 26480 GAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTAATTTTTCAGTAT 26539
||||| || |||||||| || ||| || || || ||||| |||| || || | |||
Sbjct 7968 GAAGAAACTTATAATATCGTATATGCTCATGGTTA-TTTGGCTGATTGATCTTCTAATAT 7910
Query 26540 GCGAGTTTTAATAACAGCCGTTCTCTTCATTTCTTTCTTGCTACTTGGCCGGTTGTTGGC 26599
|| ||||| || || | || | | |||| ||||| ||| ||||||| ||| ||||
Sbjct 7909 GCTAGTTTCAACGACTCTCATTTTATATATTTTTTTCTAGCTGCTTGGCCTGTTTTTGGT 7850
Query 26600 ATATGGCTGACATCTATGGGTATCTGCACAATGGCATTTAACCTAAATGGTTTTAACTTT 26659
|||||| | || | |||||| ||| ||||| || ||||||||||||| ||
Sbjct 7849 ATATGGTTCACTGCGTTGGGTACTAGCATTATGGCTTTCAACCTAAATGGTTGAAATCGA 7790
Query 26660 AACCAGTCAGTAGTAGATGTTAATGGAAAGATAATACCTACATGGGCTGATGTATTAAAC 26719
||||| | ||||| ||| | | | |||| ||| || | |||| | |||
Sbjct 7789 AACCAATTGGTAGTTGATAGTCACAGCCGTGTAATGAATACTTGAGGTGATATCAGTAAC 7730
Query 26720 CGAGCTAACCTCGGCTTTGAA-GTTATGCACGAGCGTAATGCTCATAACTTTCCACTTGA 26778
| |||||||| | | |||| |||||||| || |||||||||||||| | || || ||
Sbjct 7729 CATGCTAACCT-TGTTATGAATGTTATGCATGAACGTAATGCTCATAATTCCCCTCTAGA 7671
Query 26779 CTTAGC 26784
||| ||
Sbjct 7670 CTTGGC 7665
>seq10884
Length=5042
Score = 107 bits (118), Expect = 6e-19
Identities = 113/149 (76%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 26252 AGTTTTAGTGATGGAATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTC 26311
|| ||| |||||| |||||||| || || ||||||||||| ||||| ||| | ||||||
Sbjct 3786 AGCTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTC 3845
Query 26312 CAAGCAGAACATAATATACTCATGCACCCATTCCATATGGCTGGTGTTGCTGGGGTTTTC 26371
|| || || || || || || ||||||||||| || ||| || || ||||| || |||
Sbjct 3846 CAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGCTAGGCGTAGCTGGTGTATTC 3905
Query 26372 GGTGGAGCTCTTTTCGCTGCTATGCACGG 26400
|| || | || ||| |||||| || ||
Sbjct 3906 GGCGGCTCCCTATTCATTGCTATACATGG 3934
>seq8631
Length=609
Score = 100 bits (110), Expect = 8e-17
Identities = 113/150 (75%), Gaps = 1/150 (1%)
Strand=Plus/Minus
Query 26252 AGTTTTAGTGATGGAATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTC 26311
|| ||| |||||| |||||||| || || ||||||||||| ||||| ||| | ||||||
Sbjct 338 AGCTTTTTTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTC 279
Query 26312 CAAGCAGAACATAATATACTCATGCACCCATTCCATATGGCTGGTGTTGCTGGGGTTTTC 26371
|| || || || || || || ||||||||||| || ||| | || ||||| || |||
Sbjct 278 CAGGCCGAGCACAACATTCTTATGCACCCATTTCACATGCTAGACGTAGCTGGTGTATTC 219
Query 26372 GGTGGAGCTCT-TTTCGCTGCTATGCACGG 26400
|| || | || ||| ||||||||| ||
Sbjct 218 GGCGGCTCCCTAATTCAGTGCTATGCATGG 189
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 145918101319344
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