Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_016657.1 Length=47055 Score E Sequences producing significant alignments: (Bits) Value seq107965 291 2e-74 seq169634 253 6e-63 seq300680 150 5e-32 seq250312 127 6e-25 seq10884 120 9e-23 seq8631 109 2e-19 seq92275 95.1 4e-15 seq254652 93.3 1e-14 seq138223 89.7 2e-13 >seq107965 Length=6474 Score = 291 bits (322), Expect = 2e-74 Identities = 388/539 (72%), Gaps = 0/539 (0%) Strand=Plus/Minus Query 36204 TTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATG 36263 || || || |||||||| |||||||| | || ||||| || |||||| | || || || Sbjct 6459 TTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAACGGCTACGATA 6400 Query 36264 TTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTT 36323 ||||| || || |||||| | || ||| | || || | || ||||| | | || Sbjct 6399 TTATAAGTTTCATCTTCTAGACCAAATCTGTAACCTTCATTAGCAGATTTATTTTCTGTG 6340 Query 36324 GTTTCACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCA 36383 ||||| | || | | || || || | || ||||||||| ||||| | || Sbjct 6339 GTTTCCCTGATCAAACAAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCG 6280 Query 36384 CCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCC 36443 |||| ||| || || ||||| ||||| || || || |||||||| || ||||| || ||| Sbjct 6279 CCGATTACACCAGCTACACCTAGCATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGCC 6220 Query 36444 TGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAA 36503 || || |||| ||| || |||||||| || ||||| || ||||||||||||||||| || Sbjct 6219 TGGAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAG 6160 Query 36504 CTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAA 36563 || ||||| |||| ||||||| ||||| ||| || || ||||||||||| |||||| Sbjct 6159 CTTCCTTGACCAATTGGGTAGATCAAGAAAACAACACTCGCAGCTGCAACAGGAGCTGAA 6100 Query 36564 TAAGCTACACATATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCC 36623 || || ||| ||||| | | |||||| || | | ||||||||||||| | || ||| Sbjct 6099 TATGCAACAACCATCCAAGTTCGCATACCCAGACGAAAACTAAGTTCCCACTCACGACCC 6040 Query 36624 AAGTAAGCTGAGATACCAATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTA 36683 | |||| | | ||||| | ||||| | ||||| |||| ||| || || || || Sbjct 6039 ATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCATTG 5980 Query 36684 TATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGC 36742 |||||||| || || | | || |||||||| |||||||| || || | ||| || || Sbjct 5979 TATAACCATTCATCAACAGATGTTGCTTCCCATATTGGGTAAAAATGCAAACCTATAGC 5921 >seq169634 Length=720 Score = 253 bits (280), Expect = 6e-63 Identities = 331/458 (72%), Gaps = 0/458 (0%) Strand=Plus/Plus Query 36480 CCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCA 36539 || ||||||||||||||||| || || ||||| |||| ||||||| ||||| |||||| Sbjct 2 CCTAGAGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCA 61 Query 36540 AATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATACCTAGTCTA 36599 ||| |||||||||| |||||||| || ||| ||||| || | |||||| || | Sbjct 62 GTTGCAGCTGCAACAGAAGCTGAATATGCAACAACAATCCAAGGTCGCATACCCAGACGG 121 Query 36600 TAACTAAGTTCCCATTGTCGTCCCAAGTAAGCTGAGATACCAATGAGAAAGTGGAACACA 36659 ||||||||||||| | || |||| |||| | | ||||| | ||||| | ||| Sbjct 122 AAACTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACA 181 Query 36660 ATGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATT 36719 || |||| ||| || || || || |||||||| || || | || ||| |||||||| ||| Sbjct 182 ATTAGTTCATAAGGACCACCATTGTATAACCATTCATCAACGGATGCTGCTTCCCATATT 241 Query 36720 GGGTAGAAGTGAAGACCGATTGCGTTCGATGATGGGACGATTGCCCCAGAGATGATGTTG 36779 ||||| || || | ||| || || || | || | || | || || || || ||| Sbjct 242 GGGTAAAAATGCAAACCTATAGCTGCAGAAGTAGGAATAATGACACCTGAAATAATATTG 301 Query 36780 TTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGC 36839 |||||||| || | ||| | ||||| |||||||||||||| |||||||| ||||| Sbjct 302 TTTCCATAACTTAGAGATCCATAAACAGGTTCACGAATACCATCAATATCCACTGGAGGA 361 Query 36840 GCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGT 36899 ||||||| || || || | |||| | | ||| || || | | ||||||||| | Sbjct 362 GCAGCAATGAAAGCGATAATAAATACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAA 421 Query 36900 ACCCCAAACCACCCCACATAGAGGCGGTTGTTTGTACT 36937 || |||||||| || | || || ||||| | ||||| Sbjct 422 ACACCAAACCATCCAATGTAAAGACGGTTTTCGGTACT 459 >seq300680 Length=3790 Score = 150 bits (166), Expect = 5e-32 Identities = 228/322 (71%), Gaps = 2/322 (1%) Strand=Plus/Plus Query 36185 GAAATGTAAACTGCGGCTATTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTA 36244 |||||||||| || || || || |||||||||||||||| | || ||||| || Sbjct 353 GAAATGTAAAGAACGAGAGTTGTTGAAACTAGCATACTGGAAGACCAATCGGCCAAAATA 412 Query 36245 GCCATGAGCCGCAACAATGTTATACGTCT-CTTCTTCTTGGCCGAATTTATATCCATAGT 36303 |||||||| || || || ||||| || | |||||||||| |||||||| || || | | Sbjct 413 ACCATGAGCGGCTACGATATTATAAGTTTTCTTCTTCTTGACCGAATTTGTAACCTTCAT 472 Query 36304 TCTGAGATTCAAGCCCAGTTGTTTCACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCA 36363 | | ||||| | | ||||| || ||| || || |||| || |||| Sbjct 473 TAGCAAATTCATTTTCTCTGGTTTCCTGATTAAACTAGAGGTTACCAAGGAA-CCATGCA 531 Query 36364 TAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCA 36423 ||||| |||| | | ||| ||| || || || | ||||| || || || |||| Sbjct 532 TAGCATTAAATAGGGAGCTGACGAGTACACCAGCTACGCTTAGCATGTGAAATGGGTGCA 591 Query 36424 TAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAA 36483 |||| || ||||| || |||| || |||| ||| || |||||||| || ||||| || | Sbjct 592 TAAGAATGTTGTGCTCAACCTGGAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTA 651 Query 36484 GAGGCATACCATCAGAGAAACT 36505 |||||||||||||||| || || Sbjct 652 GAGGCATACCATCAGAAAAGCT 673 >seq250312 Length=8481 Score = 127 bits (140), Expect = 6e-25 Identities = 309/464 (67%), Gaps = 13/464 (3%) Strand=Plus/Minus Query 35978 GTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCGGCACG 36037 ||| || ||||| || || || |||| |||| |||||||||||| || | || |||| Sbjct 2026 GTCTAGAGGGAAATTATGAGCATTACATTCATACATAACTTCCATACCAAGGTTAGCACA 1967 Query 36038 GTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAA-TCAACGACTGACTGAT 36096 ||||| || ||||||||||| | || | | ||| || || || || |||| Sbjct 1966 GTTAATGATATCAGCCCAAGTATTAATTACA-TGACATTGACTGTCGACTACAGATTGAT 1908 Query 36097 TGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGCCATA 36156 ||| |||| || || || || ||||||||||| || || | | ||| ||| Sbjct 1907 GGAAACTAAAACCATTTAGGTTGTAAGCCATAGTGCTGATACCTAACACAATAAACCA-- 1850 Query 36157 TGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCGGCTATTATTAAAGCTAG 36216 || ||||||| ||| ||||||||||||||| || || || || |||| Sbjct 1849 -------GATAGGCCAAGTAGCTAGGAAGAAATGTAAAAAACGTGAGTTGTTGAAACTAG 1797 Query 36217 CATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTCTCTT 36276 ||| ||||||| | || ||||| || |||||||| || ||||| || || | ||| Sbjct 1796 CATGTCGGAAGATCAATCGACCAAAATAACCATGAGCGGCTACAATATTCTAATTTTCTC 1737 Query 36277 CTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCAC-GAATA 36335 ||||||| |||||| |||| || | || ||||| | || ||||| | || | Sbjct 1736 CTTCTTGACCGAATATATAACCTTCATTAGCTTATTCATTCTTTGTGGTTTCCCTGATCA 1677 Query 36336 AGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCT 36395 | ||| || |||| || |||||||| ||||| | | || | ||| || Sbjct 1676 AACTAGGGGTTACCAAG-GAACCACGCATAGCACTGAATAGGGAGCTGCCAATTACACCA 1618 Query 36396 GCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTC 36439 || || || ||||| || || | ||| |||| || ||||| || Sbjct 1617 GCTACGCCTAGCATGTGAAATGAGTGCCTAAGAATGTTGTGCTC 1574 >seq10884 Length=5042 Score = 120 bits (132), Expect = 9e-23 Identities = 116/149 (78%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 36357 CCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAAC 36416 || || |||||| ||||| | || |||||||| || || || || ||||| || || Sbjct 3934 CCATGTATAGCAATGAATAGGGAGCCGCCGAATACACCAGCTACGCCTAGCATGTGAAAT 3875 Query 36417 GGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAA 36476 || |||||||| || ||||| || ||||| || |||| ||| || |||||||| || ||| Sbjct 3874 GGGTGCATAAGAATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAA 3815 Query 36477 ATACCAAGAGGCATACCATCAGAGAAACT 36505 || || ||||||||||||||||| || || Sbjct 3814 ATTCCTAGAGGCATACCATCAGAAAAGCT 3786 >seq8631 Length=609 Score = 109 bits (120), Expect = 2e-19 Identities = 115/150 (77%), Gaps = 1/150 (1%) Strand=Plus/Plus Query 36357 CCGTGCATAGCAGCGAATAAAGCT-CCACCGAATACCCCTGCAACACCGAGCATATGGAA 36415 || ||||||||| |||| | | || |||||||| || || || | ||||| || || Sbjct 189 CCATGCATAGCACTGAATTAGGGAGCCGCCGAATACACCAGCTACGTCTAGCATGTGAAA 248 Query 36416 CGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGA 36475 || |||||||| || ||||| || ||||| || |||| ||| || |||||||| || || Sbjct 249 TGGGTGCATAAGAATGTTGTGCTCGGCCTGGAATACAATCATGAAGTTGAAAGTACCAGA 308 Query 36476 AATACCAAGAGGCATACCATCAGAGAAACT 36505 ||| || ||||||||||||||| | || || Sbjct 309 AATTCCTAGAGGCATACCATCAAAAAAGCT 338 Score = 86.0 bits (94), Expect = 2e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 36576 ATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAAGCTGAG 36635 ||||| || | |||| | || | ||||||||||||| | || |||| |||| | Sbjct 343 ATCCAAGGGCGCATATCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAACAAGCT 402 Query 36636 ATACCAATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCG 36695 | ||||| | ||||| | ||||| |||| ||| || || || || |||||||| || Sbjct 403 ACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCATTGTATAACCATTCA 462 Query 36696 TCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTG 36730 || | || ||| |||||||| |||||||| || || Sbjct 463 TCAATGGATGCTGCTTCCCATATTGGGTAAAAATG 497 >seq92275 Length=5108 Score = 95.1 bits (104), Expect = 4e-15 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 36759 ATTGCCCCAGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATA 36818 || || || ||||| || || ||| | || |||| | ||| || ||||| ||||||||| Sbjct 4634 ATGGCACCCGAGATAATATTATTTTCGTAAAGTAGAGATCCAGAAACAGGTTCACGAATA 4693 Query 36819 CCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTT 36878 ||||| ||||| || ||||| ||| ||| || ||||| | |||| | | ||| || Sbjct 4694 CCATCAATATCTACTGGAGGAGCATCAATGAAGGCAATAATAAATACAGAAGTTGCGGTC 4753 Query 36879 AAAAGTGCAGGGATCATTAGTACCCCAAACCACCC 36913 || || | ||||||||| | || |||||||| || Sbjct 4754 AATAGGGTAGGGATCATCAAAACACCAAACCATCC 4788 >seq254652 Length=6058 Score = 93.3 bits (102), Expect = 1e-14 Identities = 194/288 (67%), Gaps = 1/288 (0%) Strand=Plus/Minus Query 36543 GCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATACCTAGTCTATAA 36602 || |||| || ||| |||||||| || ||| ||| | || | || ||| || | || Sbjct 956 GCAGCTGTAATAGGAGCTGAATATGCAACAACAATCAAAGGTCGCACACCCAGACGGAAA 897 Query 36603 CTAAGTTCCCATTGTCGTCCCAAGTAAGCTGAGATACCAATGAGAAAGTGGAACACAATG 36662 ||||||||||| | || |||| |||| | | ||||| | ||||| | ||||| Sbjct 896 CTAAGTTCCCACTCGCGACCCATGTAACACGCTACACCAAGTAAGAAGTGTAGTACAATT 837 Query 36663 AGTTGATATGGTCCTCCGTTATAT-AACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGG 36721 |||| ||| || || || || ||| ||||| || || | || |||||| | ||| | Sbjct 836 AGTTCATAAGGACCACCATTGTATAAACCATTCATCAACAAATGTTGCTTCCTATATTAG 777 Query 36722 GTAGAAGTGAAGACCGATTGCGTTCGATGATGGGACGATTGCCCCAGAGATGATGTTGTT 36781 ||| || || | ||| | || | || | || | | | || || || || ||||| Sbjct 776 GTAAAAATGCAAACCTGTAGCTGTAGAAGTAGGAATAACAACACCTGAAATAATATTGTT 717 Query 36782 TCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATC 36829 |||||| |||| | | | | ||| ||| |||||||||| ||||| Sbjct 716 TCCATAAAGTAGAGATGTAAAAATAGGTTCATGAATACCATCAATATC 669 >seq138223 Length=10580 Score = 89.7 bits (98), Expect = 2e-13 Identities = 162/235 (69%), Gaps = 13/235 (6%) Strand=Plus/Plus Query 36386 GAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTG 36445 || ||| || || || || | ||| || || || |||||| | |||||||| ||| Sbjct 157 GACTACACCGGCTACTCCTAACATGTGAAATGGGTGCATATTG---TTGTGTTCGACCTA 213 Query 36446 AAAGACAAACATAAAAT--TGAAAGTCCCTG-----AAATACCAAGAGGCATACCATCAG 36498 || ||||| ||| ||| |||| || |||| || |||||||||||| | Sbjct 214 GAATACAAATATACAATAATGAATTTCAAGATATCAAAATTCCTAGAGGCATACCA---G 270 Query 36499 AGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGG 36558 | | | ||||| |||| ||||||| |||||| ||| || | | ||||||||| | Sbjct 271 ACATGGTTCCTTGACCAATTGGGTAGATTAAGAAAACAACAGTCCCAGTTGCAACAGGAG 330 Query 36559 CTGAATAAGCTACACATATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCA 36613 || |||| || | | | ||||| | ||||||||||| | || |||||||||| Sbjct 331 CTAAATATGCAAAAGAAATCCAATGTCTCATACCTAGATGAAAAATAAGTTCCCA 385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 149625564200724