Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27]
463,906 sequences; 661,937,708 total letters
Query= NC_016657.1
Length=47055
Score E
Sequences producing significant alignments: (Bits) Value
seq107965 291 2e-74
seq169634 253 6e-63
seq300680 150 5e-32
seq250312 127 6e-25
seq10884 120 9e-23
seq8631 109 2e-19
seq92275 95.1 4e-15
seq254652 93.3 1e-14
seq138223 89.7 2e-13
>seq107965
Length=6474
Score = 291 bits (322), Expect = 2e-74
Identities = 388/539 (72%), Gaps = 0/539 (0%)
Strand=Plus/Minus
Query 36204 TTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATG 36263
|| || || |||||||| |||||||| | || ||||| || |||||| | || || ||
Sbjct 6459 TTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAACGGCTACGATA 6400
Query 36264 TTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTT 36323
||||| || || |||||| | || ||| | || || | || ||||| | | ||
Sbjct 6399 TTATAAGTTTCATCTTCTAGACCAAATCTGTAACCTTCATTAGCAGATTTATTTTCTGTG 6340
Query 36324 GTTTCACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCA 36383
||||| | || | | || || || | || ||||||||| ||||| | ||
Sbjct 6339 GTTTCCCTGATCAAACAAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCG 6280
Query 36384 CCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCC 36443
|||| ||| || || ||||| ||||| || || || |||||||| || ||||| || |||
Sbjct 6279 CCGATTACACCAGCTACACCTAGCATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGCC 6220
Query 36444 TGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAA 36503
|| || |||| ||| || |||||||| || ||||| || ||||||||||||||||| ||
Sbjct 6219 TGGAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAG 6160
Query 36504 CTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAA 36563
|| ||||| |||| ||||||| ||||| ||| || || ||||||||||| ||||||
Sbjct 6159 CTTCCTTGACCAATTGGGTAGATCAAGAAAACAACACTCGCAGCTGCAACAGGAGCTGAA 6100
Query 36564 TAAGCTACACATATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCC 36623
|| || ||| ||||| | | |||||| || | | ||||||||||||| | || |||
Sbjct 6099 TATGCAACAACCATCCAAGTTCGCATACCCAGACGAAAACTAAGTTCCCACTCACGACCC 6040
Query 36624 AAGTAAGCTGAGATACCAATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTA 36683
| |||| | | ||||| | ||||| | ||||| |||| ||| || || || ||
Sbjct 6039 ATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCATTG 5980
Query 36684 TATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGC 36742
|||||||| || || | | || |||||||| |||||||| || || | ||| || ||
Sbjct 5979 TATAACCATTCATCAACAGATGTTGCTTCCCATATTGGGTAAAAATGCAAACCTATAGC 5921
>seq169634
Length=720
Score = 253 bits (280), Expect = 6e-63
Identities = 331/458 (72%), Gaps = 0/458 (0%)
Strand=Plus/Plus
Query 36480 CCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCA 36539
|| ||||||||||||||||| || || ||||| |||| ||||||| ||||| ||||||
Sbjct 2 CCTAGAGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCA 61
Query 36540 AATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATACCTAGTCTA 36599
||| |||||||||| |||||||| || ||| ||||| || | |||||| || |
Sbjct 62 GTTGCAGCTGCAACAGAAGCTGAATATGCAACAACAATCCAAGGTCGCATACCCAGACGG 121
Query 36600 TAACTAAGTTCCCATTGTCGTCCCAAGTAAGCTGAGATACCAATGAGAAAGTGGAACACA 36659
||||||||||||| | || |||| |||| | | ||||| | ||||| | |||
Sbjct 122 AAACTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACA 181
Query 36660 ATGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATT 36719
|| |||| ||| || || || || |||||||| || || | || ||| |||||||| |||
Sbjct 182 ATTAGTTCATAAGGACCACCATTGTATAACCATTCATCAACGGATGCTGCTTCCCATATT 241
Query 36720 GGGTAGAAGTGAAGACCGATTGCGTTCGATGATGGGACGATTGCCCCAGAGATGATGTTG 36779
||||| || || | ||| || || || | || | || | || || || || |||
Sbjct 242 GGGTAAAAATGCAAACCTATAGCTGCAGAAGTAGGAATAATGACACCTGAAATAATATTG 301
Query 36780 TTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGC 36839
|||||||| || | ||| | ||||| |||||||||||||| |||||||| |||||
Sbjct 302 TTTCCATAACTTAGAGATCCATAAACAGGTTCACGAATACCATCAATATCCACTGGAGGA 361
Query 36840 GCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGT 36899
||||||| || || || | |||| | | ||| || || | | ||||||||| |
Sbjct 362 GCAGCAATGAAAGCGATAATAAATACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAA 421
Query 36900 ACCCCAAACCACCCCACATAGAGGCGGTTGTTTGTACT 36937
|| |||||||| || | || || ||||| | |||||
Sbjct 422 ACACCAAACCATCCAATGTAAAGACGGTTTTCGGTACT 459
>seq300680
Length=3790
Score = 150 bits (166), Expect = 5e-32
Identities = 228/322 (71%), Gaps = 2/322 (1%)
Strand=Plus/Plus
Query 36185 GAAATGTAAACTGCGGCTATTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTA 36244
|||||||||| || || || || |||||||||||||||| | || ||||| ||
Sbjct 353 GAAATGTAAAGAACGAGAGTTGTTGAAACTAGCATACTGGAAGACCAATCGGCCAAAATA 412
Query 36245 GCCATGAGCCGCAACAATGTTATACGTCT-CTTCTTCTTGGCCGAATTTATATCCATAGT 36303
|||||||| || || || ||||| || | |||||||||| |||||||| || || | |
Sbjct 413 ACCATGAGCGGCTACGATATTATAAGTTTTCTTCTTCTTGACCGAATTTGTAACCTTCAT 472
Query 36304 TCTGAGATTCAAGCCCAGTTGTTTCACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCA 36363
| | ||||| | | ||||| || ||| || || |||| || ||||
Sbjct 473 TAGCAAATTCATTTTCTCTGGTTTCCTGATTAAACTAGAGGTTACCAAGGAA-CCATGCA 531
Query 36364 TAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCA 36423
||||| |||| | | ||| ||| || || || | ||||| || || || ||||
Sbjct 532 TAGCATTAAATAGGGAGCTGACGAGTACACCAGCTACGCTTAGCATGTGAAATGGGTGCA 591
Query 36424 TAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAA 36483
|||| || ||||| || |||| || |||| ||| || |||||||| || ||||| || |
Sbjct 592 TAAGAATGTTGTGCTCAACCTGGAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTA 651
Query 36484 GAGGCATACCATCAGAGAAACT 36505
|||||||||||||||| || ||
Sbjct 652 GAGGCATACCATCAGAAAAGCT 673
>seq250312
Length=8481
Score = 127 bits (140), Expect = 6e-25
Identities = 309/464 (67%), Gaps = 13/464 (3%)
Strand=Plus/Minus
Query 35978 GTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCGGCACG 36037
||| || ||||| || || || |||| |||| |||||||||||| || | || ||||
Sbjct 2026 GTCTAGAGGGAAATTATGAGCATTACATTCATACATAACTTCCATACCAAGGTTAGCACA 1967
Query 36038 GTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAA-TCAACGACTGACTGAT 36096
||||| || ||||||||||| | || | | ||| || || || || ||||
Sbjct 1966 GTTAATGATATCAGCCCAAGTATTAATTACA-TGACATTGACTGTCGACTACAGATTGAT 1908
Query 36097 TGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGCCATA 36156
||| |||| || || || || ||||||||||| || || | | ||| |||
Sbjct 1907 GGAAACTAAAACCATTTAGGTTGTAAGCCATAGTGCTGATACCTAACACAATAAACCA-- 1850
Query 36157 TGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCGGCTATTATTAAAGCTAG 36216
|| ||||||| ||| ||||||||||||||| || || || || ||||
Sbjct 1849 -------GATAGGCCAAGTAGCTAGGAAGAAATGTAAAAAACGTGAGTTGTTGAAACTAG 1797
Query 36217 CATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTCTCTT 36276
||| ||||||| | || ||||| || |||||||| || ||||| || || | |||
Sbjct 1796 CATGTCGGAAGATCAATCGACCAAAATAACCATGAGCGGCTACAATATTCTAATTTTCTC 1737
Query 36277 CTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCAC-GAATA 36335
||||||| |||||| |||| || | || ||||| | || ||||| | || |
Sbjct 1736 CTTCTTGACCGAATATATAACCTTCATTAGCTTATTCATTCTTTGTGGTTTCCCTGATCA 1677
Query 36336 AGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCT 36395
| ||| || |||| || |||||||| ||||| | | || | ||| ||
Sbjct 1676 AACTAGGGGTTACCAAG-GAACCACGCATAGCACTGAATAGGGAGCTGCCAATTACACCA 1618
Query 36396 GCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTC 36439
|| || || ||||| || || | ||| |||| || ||||| ||
Sbjct 1617 GCTACGCCTAGCATGTGAAATGAGTGCCTAAGAATGTTGTGCTC 1574
>seq10884
Length=5042
Score = 120 bits (132), Expect = 9e-23
Identities = 116/149 (78%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 36357 CCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAAC 36416
|| || |||||| ||||| | || |||||||| || || || || ||||| || ||
Sbjct 3934 CCATGTATAGCAATGAATAGGGAGCCGCCGAATACACCAGCTACGCCTAGCATGTGAAAT 3875
Query 36417 GGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAA 36476
|| |||||||| || ||||| || ||||| || |||| ||| || |||||||| || |||
Sbjct 3874 GGGTGCATAAGAATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAA 3815
Query 36477 ATACCAAGAGGCATACCATCAGAGAAACT 36505
|| || ||||||||||||||||| || ||
Sbjct 3814 ATTCCTAGAGGCATACCATCAGAAAAGCT 3786
>seq8631
Length=609
Score = 109 bits (120), Expect = 2e-19
Identities = 115/150 (77%), Gaps = 1/150 (1%)
Strand=Plus/Plus
Query 36357 CCGTGCATAGCAGCGAATAAAGCT-CCACCGAATACCCCTGCAACACCGAGCATATGGAA 36415
|| ||||||||| |||| | | || |||||||| || || || | ||||| || ||
Sbjct 189 CCATGCATAGCACTGAATTAGGGAGCCGCCGAATACACCAGCTACGTCTAGCATGTGAAA 248
Query 36416 CGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGA 36475
|| |||||||| || ||||| || ||||| || |||| ||| || |||||||| || ||
Sbjct 249 TGGGTGCATAAGAATGTTGTGCTCGGCCTGGAATACAATCATGAAGTTGAAAGTACCAGA 308
Query 36476 AATACCAAGAGGCATACCATCAGAGAAACT 36505
||| || ||||||||||||||| | || ||
Sbjct 309 AATTCCTAGAGGCATACCATCAAAAAAGCT 338
Score = 86.0 bits (94), Expect = 2e-12
Identities = 112/155 (72%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 36576 ATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAAGCTGAG 36635
||||| || | |||| | || | ||||||||||||| | || |||| |||| |
Sbjct 343 ATCCAAGGGCGCATATCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAACAAGCT 402
Query 36636 ATACCAATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCG 36695
| ||||| | ||||| | ||||| |||| ||| || || || || |||||||| ||
Sbjct 403 ACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCATTGTATAACCATTCA 462
Query 36696 TCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTG 36730
|| | || ||| |||||||| |||||||| || ||
Sbjct 463 TCAATGGATGCTGCTTCCCATATTGGGTAAAAATG 497
>seq92275
Length=5108
Score = 95.1 bits (104), Expect = 4e-15
Identities = 114/155 (74%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 36759 ATTGCCCCAGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATA 36818
|| || || ||||| || || ||| | || |||| | ||| || ||||| |||||||||
Sbjct 4634 ATGGCACCCGAGATAATATTATTTTCGTAAAGTAGAGATCCAGAAACAGGTTCACGAATA 4693
Query 36819 CCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTT 36878
||||| ||||| || ||||| ||| ||| || ||||| | |||| | | ||| ||
Sbjct 4694 CCATCAATATCTACTGGAGGAGCATCAATGAAGGCAATAATAAATACAGAAGTTGCGGTC 4753
Query 36879 AAAAGTGCAGGGATCATTAGTACCCCAAACCACCC 36913
|| || | ||||||||| | || |||||||| ||
Sbjct 4754 AATAGGGTAGGGATCATCAAAACACCAAACCATCC 4788
>seq254652
Length=6058
Score = 93.3 bits (102), Expect = 1e-14
Identities = 194/288 (67%), Gaps = 1/288 (0%)
Strand=Plus/Minus
Query 36543 GCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATACCTAGTCTATAA 36602
|| |||| || ||| |||||||| || ||| ||| | || | || ||| || | ||
Sbjct 956 GCAGCTGTAATAGGAGCTGAATATGCAACAACAATCAAAGGTCGCACACCCAGACGGAAA 897
Query 36603 CTAAGTTCCCATTGTCGTCCCAAGTAAGCTGAGATACCAATGAGAAAGTGGAACACAATG 36662
||||||||||| | || |||| |||| | | ||||| | ||||| | |||||
Sbjct 896 CTAAGTTCCCACTCGCGACCCATGTAACACGCTACACCAAGTAAGAAGTGTAGTACAATT 837
Query 36663 AGTTGATATGGTCCTCCGTTATAT-AACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGG 36721
|||| ||| || || || || ||| ||||| || || | || |||||| | ||| |
Sbjct 836 AGTTCATAAGGACCACCATTGTATAAACCATTCATCAACAAATGTTGCTTCCTATATTAG 777
Query 36722 GTAGAAGTGAAGACCGATTGCGTTCGATGATGGGACGATTGCCCCAGAGATGATGTTGTT 36781
||| || || | ||| | || | || | || | | | || || || || |||||
Sbjct 776 GTAAAAATGCAAACCTGTAGCTGTAGAAGTAGGAATAACAACACCTGAAATAATATTGTT 717
Query 36782 TCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATC 36829
|||||| |||| | | | | ||| ||| |||||||||| |||||
Sbjct 716 TCCATAAAGTAGAGATGTAAAAATAGGTTCATGAATACCATCAATATC 669
>seq138223
Length=10580
Score = 89.7 bits (98), Expect = 2e-13
Identities = 162/235 (69%), Gaps = 13/235 (6%)
Strand=Plus/Plus
Query 36386 GAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTG 36445
|| ||| || || || || | ||| || || || |||||| | |||||||| |||
Sbjct 157 GACTACACCGGCTACTCCTAACATGTGAAATGGGTGCATATTG---TTGTGTTCGACCTA 213
Query 36446 AAAGACAAACATAAAAT--TGAAAGTCCCTG-----AAATACCAAGAGGCATACCATCAG 36498
|| ||||| ||| ||| |||| || |||| || |||||||||||| |
Sbjct 214 GAATACAAATATACAATAATGAATTTCAAGATATCAAAATTCCTAGAGGCATACCA---G 270
Query 36499 AGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGG 36558
| | | ||||| |||| ||||||| |||||| ||| || | | ||||||||| |
Sbjct 271 ACATGGTTCCTTGACCAATTGGGTAGATTAAGAAAACAACAGTCCCAGTTGCAACAGGAG 330
Query 36559 CTGAATAAGCTACACATATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCA 36613
|| |||| || | | | ||||| | ||||||||||| | || ||||||||||
Sbjct 331 CTAAATATGCAAAAGAAATCCAATGTCTCATACCTAGATGAAAAATAAGTTCCCA 385
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 149625564200724
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