Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq107965 271 2e-68 seq169634 226 9e-55 seq250312 159 1e-34 seq300680 158 4e-34 seq10884 132 1e-26 seq8631 127 6e-25 seq254652 113 1e-20 seq92275 102 2e-17 seq146730 82.4 2e-11 >seq107965 Length=6474 Score = 271 bits (300), Expect = 2e-68 Identities = 414/590 (70%), Gaps = 0/590 (0%) Strand=Plus/Minus Query 5426 TTGTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATG 5485 ||||| || |||||||| |||||||| | || ||||| || |||||| | || || || Sbjct 6459 TTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAACGGCTACGATA 6400 Query 5486 TTATACGTTTCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTT 5545 ||||| ||||| || ||| | || ||| | || || | || ||| || | || Sbjct 6399 TTATAAGTTTCATCTTCTAGACCAAATCTGTAACCTTCATTAGCAGATTTATTTTCTGTG 6340 Query 5546 GTTTCACGAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCA 5605 ||||| | || | |||| || || | |||||||||||| ||| | | || Sbjct 6339 GTTTCCCTGATCAAACAAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCG 6280 Query 5606 CCGAATACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCC 5665 |||| ||| ||||| ||||| |||||||| || || |||||||| || ||||| || ||| Sbjct 6279 CCGATTACACCAGCTACACCTAGCATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGCC 6220 Query 5666 TGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAA 5725 |||||||| | ||| ||||| ||||||||||| || || ||||||||||||||| || Sbjct 6219 TGGAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAG 6160 Query 5726 CTTCCCTGTCCGAAAGGGTATACTAAAAATACTGAGTAGGCTGCGGCAACCGGTGCTGAA 5785 ||||| || || | ||||| | || || || || || ||||| || |||||| Sbjct 6159 CTTCCTTGACCAATTGGGTAGATCAAGAAAACAACACTCGCAGCTGCAACAGGAGCTGAA 6100 Query 5786 TATGCTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCCC 5845 ||||| || ||||| | |||||| || | | ||||||||||||| | || ||| Sbjct 6099 TATGCAACAACCATCCAAGTTCGCATACCCAGACGAAAACTAAGTTCCCACTCACGACCC 6040 Query 5846 AAGTAAGCTGCGATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATTG 5905 | |||| || | ||||| | |||||| | || | |||| || || || |||||| Sbjct 6039 ATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCATTG 5980 Query 5906 TAAAGCCATTCATCGAGATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGCG 5965 || | ||||||||| | | | ||||||||| || || || || || || || || || Sbjct 5979 TATAACCATTCATCAACAGATGTTGCTTCCCATATTGGGTAAAAATGCAAACCTATAGCT 5920 Query 5966 TTGGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAG 6015 || | || | || || ||| | || || ||||||||||| || || Sbjct 5919 GCAGAAATAGGAATAATGGTACCTAAAATAATATTGTTTCCATAAAGCAG 5870 >seq169634 Length=720 Score = 226 bits (250), Expect = 9e-55 Identities = 330/462 (71%), Gaps = 6/462 (1%) Strand=Plus/Plus Query 5702 CCAAGAGGCATACCATCACTGAAACTTCCCTGTCCGAAAGGGTATACTAAAAATACTG-A 5760 || ||||||||||||||| || ||||| || || | ||||| | || || || | | Sbjct 2 CCTAGAGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCA 61 Query 5761 GTAGGCTGCGGCAACCGGTGCTGAATATGCTACGCAAATCCATGGTCGCATTCCTAATCT 5820 || || || ||||| | ||||||||||| || |||||| |||||||| || | | Sbjct 62 GT-TGCAGCTGCAACAGAAGCTGAATATGCAACAACAATCCAAGGTCGCATACCCAGACG 120 Query 5821 GTAACTAAGTTCCCATTGGCGTCCCAAGTAAGCTGCGATACCAATAAGGAAGTGGAAGAC 5880 | ||||||||||||| | || |||| |||| || | ||||| | |||||| | || Sbjct 121 GAAACTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAAC 180 Query 5881 GACGAGTTGGTATGGTCCTCCATTGTAAAGCCATTCATCGA--GATTGGCTGCTTCCCAG 5938 | |||| || || || |||||||| | ||||||||| | ||| ||||||||||| Sbjct 181 AATTAGTTCATAAGGACCACCATTGTATAACCATTCATCAACGGAT--GCTGCTTCCCAT 238 Query 5939 ATGGGATAGAAGTGTAACCCAATTGCGTTGGAGCTGGGTACAACGGCTCCTGATATGATG 5998 || || || || || || || || || || | || | || | | ||||| || || Sbjct 239 ATTGGGTAAAAATGCAAACCTATAGCTGCAGAAGTAGGAATAATGACACCTGAAATAATA 298 Query 5999 TTGTTTCCATAGAGTAGAGATCCTGCGACGGGTTCACGTATGCCGTCGATGTCGACTGGG 6058 ||||||||||| ||||||||| || |||||||| || || || || || ||||| Sbjct 299 TTGTTTCCATAACTTAGAGATCCATAAACAGGTTCACGAATACCATCAATATCCACTGGA 358 Query 6059 GGTGCAGCTACGAATGCTAATATAAATGCAGTAGTTGCGGTTAAGAGTGCGGGTATCATT 6118 || ||||| | ||| || | |||||| ||| ||||||||| || | | || ||||| Sbjct 359 GGAGCAGCAATGAAAGCGATAATAAATACAGAAGTTGCGGTCAATAAGGTAGGGATCATC 418 Query 6119 AAGACACCAAACCACCCCACATAGAGGCGGTTGTTGGTGCTA 6160 || ||||||||||| || | || || ||||| | ||| ||| Sbjct 419 AAAACACCAAACCATCCAATGTAAAGACGGTTTTCGGTACTA 460 >seq250312 Length=8481 Score = 159 bits (176), Expect = 1e-34 Identities = 230/322 (71%), Gaps = 13/322 (4%) Strand=Plus/Minus Query 5201 TCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAGGTTGGCACGG 5260 || || ||||| || |||||||| | ||| | ||| ||||||||||||||||| |||| | Sbjct 2025 TCTAGAGGGAAATTATGAGCATTACATTCATACATAACTTCCATACCAAGGTTAGCACAG 1966 Query 5261 TTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTCAACGACTGACTGATTG 5320 || | || ||| |||||||| || | || | ||| || || || |||| | Sbjct 1965 TTAATGATATCAGCCCAAGTATTAATTACATGACATTGACTGTCGACTACAGATTGATGG 1906 Query 5321 AAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAGCCATATG 5380 || |||| || || || || ||||||||||| ||| || ||| || || Sbjct 1905 AAACTAAAACCATTTAGGTTGTAAGCCATAGTGCTGATACC--------TAACACA-AT- 1856 Query 5381 CAAAC--GACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATTGTTAAAGCTAG 5438 |||| || ||||||||||| ||||||||||||||| ||| ||||| || |||| Sbjct 1855 -AAACCAGATAGGCCAAGTAGCTAGGAAGAAATGTAAAAAACGTGAGTTGTTGAAACTAG 1797 Query 5439 CATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTTTCTT 5498 ||| ||||||| | || ||||| || |||||||| || ||||| || || ||||| Sbjct 1796 CATGTCGGAAGATCAATCGACCAAAATAACCATGAGCGGCTACAATATTCTAATTTTCTC 1737 Query 5499 CCTCTTGGCCGAATTTATATCC 5520 | ||||| |||||| |||| || Sbjct 1736 CTTCTTGACCGAATATATAACC 1715 >seq300680 Length=3790 Score = 158 bits (174), Expect = 4e-34 Identities = 225/314 (72%), Gaps = 2/314 (1%) Strand=Plus/Plus Query 5407 GAAATGTAAACTACGGCTATTGTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTA 5466 |||||||||| ||| ||||| || |||||||||||||||| | || ||||| || Sbjct 353 GAAATGTAAAGAACGAGAGTTGTTGAAACTAGCATACTGGAAGACCAATCGGCCAAAATA 412 Query 5467 GCCATGAGCCGCAACAATGTTATACGTTT-CTTCCTCTTGGCCGAATTTATATCCATAGT 5525 |||||||| || || || ||||| |||| |||| ||||| |||||||| || || | | Sbjct 413 ACCATGAGCGGCTACGATATTATAAGTTTTCTTCTTCTTGACCGAATTTGTAACCTTCAT 472 Query 5526 TCTGAGAAGTAAGCCCAGTTGTTTCACGAATGAGCGAAGAAGTAACAAGACTTCCATGCA 5585 | | | | | | ||||| || | | | | || || || | ||||||| Sbjct 473 TAGCAAATTCATTTTCTCTGGTTTCCTGATTAAACTA-GAGGTTACCAAGGAACCATGCA 531 Query 5586 TAGCAGCGAACAAAGCTCCACCGAATACCCCAGCAACACCGAGCATGTGGAACGGATGCA 5645 ||||| || | | | ||| ||| ||||| || | |||||||| || || |||| Sbjct 532 TAGCATTAAATAGGGAGCTGACGAGTACACCAGCTACGCTTAGCATGTGAAATGGGTGCA 591 Query 5646 TAAGGATATTGTGTTCTGCCTGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAA 5705 |||| || ||||| || |||||||||| | ||| ||||| ||||||||||| || || | Sbjct 592 TAAGAATGTTGTGCTCAACCTGGAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTA 651 Query 5706 GAGGCATACCATCA 5719 |||||||||||||| Sbjct 652 GAGGCATACCATCA 665 >seq10884 Length=5042 Score = 132 bits (146), Expect = 1e-26 Identities = 114/141 (81%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 5579 CCATGCATAGCAGCGAACAAAGCTCCACCGAATACCCCAGCAACACCGAGCATGTGGAAC 5638 ||||| |||||| ||| | | || |||||||| ||||| || || |||||||| || Sbjct 3934 CCATGTATAGCAATGAATAGGGAGCCGCCGAATACACCAGCTACGCCTAGCATGTGAAAT 3875 Query 5639 GGATGCATAAGGATATTGTGTTCTGCCTGGAATACGAACATAAAGTTAAAAGTACCAGAG 5698 || |||||||| || ||||| || ||||||||||| | ||| ||||| ||||||||||| Sbjct 3874 GGGTGCATAAGAATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAA 3815 Query 5699 ATACCAAGAGGCATACCATCA 5719 || || ||||||||||||||| Sbjct 3814 ATTCCTAGAGGCATACCATCA 3794 >seq8631 Length=609 Score = 127 bits (140), Expect = 6e-25 Identities = 114/142 (80%), Gaps = 1/142 (1%) Strand=Plus/Plus Query 5579 CCATGCATAGCAGCGAACAAAGCT-CCACCGAATACCCCAGCAACACCGAGCATGTGGAA 5637 |||||||||||| ||| | | || |||||||| ||||| || | |||||||| || Sbjct 189 CCATGCATAGCACTGAATTAGGGAGCCGCCGAATACACCAGCTACGTCTAGCATGTGAAA 248 Query 5638 CGGATGCATAAGGATATTGTGTTCTGCCTGGAATACGAACATAAAGTTAAAAGTACCAGA 5697 || |||||||| || ||||| || ||||||||||| | ||| ||||| ||||||||||| Sbjct 249 TGGGTGCATAAGAATGTTGTGCTCGGCCTGGAATACAATCATGAAGTTGAAAGTACCAGA 308 Query 5698 GATACCAAGAGGCATACCATCA 5719 || || ||||||||||||||| Sbjct 309 AATTCCTAGAGGCATACCATCA 330 >seq254652 Length=6058 Score = 113 bits (124), Expect = 1e-20 Identities = 172/244 (70%), Gaps = 1/244 (0%) Strand=Plus/Minus Query 5777 GGTGCTGAATATGCTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCAT 5836 || ||||||||||| || |||| | ||||||| || | | | ||||||||||||| Sbjct 944 GGAGCTGAATATGCAACAACAATCAAAGGTCGCACACCCAGACGGAAACTAAGTTCCCAC 885 Query 5837 TGGCGTCCCAAGTAAGCTGCGATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGT 5896 | ||| |||| |||| || | ||||| | |||||| | || | |||| || || Sbjct 884 TCGCGACCCATGTAACACGCTACACCAAGTAAGAAGTGTAGTACAATTAGTTCATAAGGA 825 Query 5897 CCTCCATTGTA-AAGCCATTCATCGAGATTGGCTGCTTCCCAGATGGGATAGAAGTGTAA 5955 || |||||||| || ||||||||| | | | ||||||| | || | || || || || Sbjct 824 CCACCATTGTATAAACCATTCATCAACAAATGTTGCTTCCTATATTAGGTAAAAATGCAA 765 Query 5956 CCCAATTGCGTTGGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAG 6015 || | || | || | || | ||| | ||||| || || ||||||||||| ||||| Sbjct 764 ACCTGTAGCTGTAGAAGTAGGAATAACAACACCTGAAATAATATTGTTTCCATAAAGTAG 705 Query 6016 AGAT 6019 |||| Sbjct 704 AGAT 701 >seq92275 Length=5108 Score = 102 bits (112), Expect = 2e-17 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 5980 AACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGCGACGGGTTCACGTAT 6039 || ||| || || || || || ||| | || ||||||||||| | || |||||||| || Sbjct 4633 AATGGCACCCGAGATAATATTATTTTCGTAAAGTAGAGATCCAGAAACAGGTTCACGAAT 4692 Query 6040 GCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAATGCAGTAGTTGCGGT 6099 || || || || ||||| || ||| | | ||| || | |||||| ||| ||||||||| Sbjct 4693 ACCATCAATATCTACTGGAGGAGCATCAATGAAGGCAATAATAAATACAGAAGTTGCGGT 4752 Query 6100 TAAGAGTGCGGGTATCATTAAGACACCAAACCACCC 6135 || || | || ||||| || ||||||||||| || Sbjct 4753 CAATAGGGTAGGGATCATCAAAACACCAAACCATCC 4788 >seq146730 Length=1690 Score = 82.4 bits (90), Expect = 2e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 5203 AAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAGGTTGGCACGGTT 5262 ||| ||||| || |||||||| |||| ||||| ||||||||||||||||| |||||||| Sbjct 1054 AAGAGGGAAATTATGAGCATTATGTTCATGCATAACTTCCATACCAAGGTTAGCACGGTT 995 Query 5263 CAGGACATCTGCCCAAGT 5280 | || || |||||||| Sbjct 994 AATGATATAAGCCCAAGT 977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151808671099116