Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq107965 284 4e-72 seq169634 250 8e-62 seq300680 154 4e-33 seq250312 136 1e-27 seq10884 120 9e-23 seq8631 109 2e-19 seq92275 95.1 4e-15 seq254652 87.8 5e-13 seq146730 84.2 7e-12 seq138223 84.2 7e-12 seq36621 82.4 2e-11 >seq107965 Length=6474 Score = 284 bits (314), Expect = 4e-72 Identities = 415/587 (71%), Gaps = 0/587 (0%) Strand=Plus/Minus Query 25684 TTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATG 25743 || || || |||||||| |||||||| | || ||||| || |||||| | || || || Sbjct 6459 TTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAACGGCTACGATA 6400 Query 25744 TTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTT 25803 ||||| || || |||||| | || ||| | || || | || ||||| | | || Sbjct 6399 TTATAAGTTTCATCTTCTAGACCAAATCTGTAACCTTCATTAGCAGATTTATTTTCTGTG 6340 Query 25804 GTTTCACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCA 25863 ||||| | || | | || || || | || ||||||||| ||||| | || Sbjct 6339 GTTTCCCTGATCAAACAAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCG 6280 Query 25864 CCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCC 25923 |||| ||| || || ||||| ||||| || || || |||||||| || ||||| || ||| Sbjct 6279 CCGATTACACCAGCTACACCTAGCATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGCC 6220 Query 25924 TGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAA 25983 || || |||| ||| || |||||||| || ||||| || ||||||||||||||||| || Sbjct 6219 TGGAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAG 6160 Query 25984 CTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAA 26043 || ||||| |||| ||||||| ||||| ||| || || ||||||||||| |||||| Sbjct 6159 CTTCCTTGACCAATTGGGTAGATCAAGAAAACAACACTCGCAGCTGCAACAGGAGCTGAA 6100 Query 26044 TAAGCTACACATATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTGTCGTCCC 26103 || || ||| ||||| | | ||| || || | | ||||||||||||| | || ||| Sbjct 6099 TATGCAACAACCATCCAAGTTCGCATACCCAGACGAAAACTAAGTTCCCACTCACGACCC 6040 Query 26104 AAGTAAGCTGAGATGCCGATGAGAAAGTGGAACACAATAAGTTGATATGGTCCACCGTTA 26163 | |||| | | || | | ||||| | ||||| |||| ||| || ||||| || Sbjct 6039 ATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCATTG 5980 Query 26164 TACAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCG 26223 || ||||| || || | | || |||||||| |||||||| || || | ||| || || Sbjct 5979 TATAACCATTCATCAACAGATGTTGCTTCCCATATTGGGTAAAAATGCAAACCTATAGCT 5920 Query 26224 TTAGATGACGGGACGATTGCCCCTGAGATGATGTTGTTTCCATAGAG 26270 ||| || | || | ||| | || || ||||||||||| || Sbjct 5919 GCAGAAATAGGAATAATGGTACCTAAAATAATATTGTTTCCATAAAG 5873 >seq169634 Length=720 Score = 250 bits (276), Expect = 8e-62 Identities = 330/458 (72%), Gaps = 0/458 (0%) Strand=Plus/Plus Query 25960 CCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCA 26019 || ||||||||||||||||| || || ||||| |||| ||||||| ||||| |||||| Sbjct 2 CCTAGAGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCA 61 Query 26020 AATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATGCCTAGTCTA 26079 ||| |||||||||| |||||||| || ||| ||||| || | ||| || || | Sbjct 62 GTTGCAGCTGCAACAGAAGCTGAATATGCAACAACAATCCAAGGTCGCATACCCAGACGG 121 Query 26080 TAACTAAGTTCCCATTGTCGTCCCAAGTAAGCTGAGATGCCGATGAGAAAGTGGAACACA 26139 ||||||||||||| | || |||| |||| | | || | | ||||| | ||| Sbjct 122 AAACTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACA 181 Query 26140 ATAAGTTGATATGGTCCACCGTTATACAACCACTCGTCGAGGGTTGCAGCTTCCCAGATT 26199 || |||| ||| || ||||| || || ||||| || || | || ||| |||||||| ||| Sbjct 182 ATTAGTTCATAAGGACCACCATTGTATAACCATTCATCAACGGATGCTGCTTCCCATATT 241 Query 26200 GGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGAGATGATGTTG 26259 ||||| || || | ||| || || ||| | || | || | ||||| || || ||| Sbjct 242 GGGTAAAAATGCAAACCTATAGCTGCAGAAGTAGGAATAATGACACCTGAAATAATATTG 301 Query 26260 TTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGC 26319 |||||||| || | ||| | ||||| |||||||||||||| |||||||| ||||| Sbjct 302 TTTCCATAACTTAGAGATCCATAAACAGGTTCACGAATACCATCAATATCCACTGGAGGA 361 Query 26320 GCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGT 26379 ||||||| || || || | |||| | | ||| || || | | ||||||||| | Sbjct 362 GCAGCAATGAAAGCGATAATAAATACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAA 421 Query 26380 ACCCCAAACCACCCCACATAGAGGCGGTTGTTTGTACT 26417 || |||||||| || | || || ||||| | ||||| Sbjct 422 ACACCAAACCATCCAATGTAAAGACGGTTTTCGGTACT 459 >seq300680 Length=3790 Score = 154 bits (170), Expect = 4e-33 Identities = 229/322 (71%), Gaps = 2/322 (1%) Strand=Plus/Plus Query 25665 GAAATGTAAACTACGGCTATTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTA 25724 |||||||||| ||| || || || |||||||||||||||| | || ||||| || Sbjct 353 GAAATGTAAAGAACGAGAGTTGTTGAAACTAGCATACTGGAAGACCAATCGGCCAAAATA 412 Query 25725 GCCATGAGCCGCAACAATGTTATACGTCT-CTTCTTCTTGGCCGAATTTATATCCATAGT 25783 |||||||| || || || ||||| || | |||||||||| |||||||| || || | | Sbjct 413 ACCATGAGCGGCTACGATATTATAAGTTTTCTTCTTCTTGACCGAATTTGTAACCTTCAT 472 Query 25784 TCTGAGATTCAAGCCCAGTTGTTTCACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCA 25843 | | ||||| | | ||||| || ||| || || |||| || |||| Sbjct 473 TAGCAAATTCATTTTCTCTGGTTTCCTGATTAAACTAGAGGTTACCAAGGAA-CCATGCA 531 Query 25844 TAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCA 25903 ||||| |||| | | ||| ||| || || || | ||||| || || || |||| Sbjct 532 TAGCATTAAATAGGGAGCTGACGAGTACACCAGCTACGCTTAGCATGTGAAATGGGTGCA 591 Query 25904 TAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAA 25963 |||| || ||||| || |||| || |||| ||| || |||||||| || ||||| || | Sbjct 592 TAAGAATGTTGTGCTCAACCTGGAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTA 651 Query 25964 GAGGCATACCATCAGAGAAACT 25985 |||||||||||||||| || || Sbjct 652 GAGGCATACCATCAGAAAAGCT 673 >seq250312 Length=8481 Score = 136 bits (150), Expect = 1e-27 Identities = 311/464 (67%), Gaps = 13/464 (3%) Strand=Plus/Minus Query 25458 GTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCGGCACG 25517 ||| |||||||| || || || |||| |||| |||||||||||| || | || |||| Sbjct 2026 GTCTAGAGGGAAATTATGAGCATTACATTCATACATAACTTCCATACCAAGGTTAGCACA 1967 Query 25518 GTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAA-TCAACGACTGACTGAT 25576 ||||| || ||||||||||| | || | | ||| || || || || |||| Sbjct 1966 GTTAATGATATCAGCCCAAGTATTAATTACA-TGACATTGACTGTCGACTACAGATTGAT 1908 Query 25577 TGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGCCATA 25636 ||| |||| || || || || ||||||||||| || || | | ||| ||| Sbjct 1907 GGAAACTAAAACCATTTAGGTTGTAAGCCATAGTGCTGATACCTAACACAATAAACCA-- 1850 Query 25637 TGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTATTAAAGCTAG 25696 || ||||||| ||| ||||||||||||||| ||| || || || |||| Sbjct 1849 -------GATAGGCCAAGTAGCTAGGAAGAAATGTAAAAAACGTGAGTTGTTGAAACTAG 1797 Query 25697 CATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTCTCTT 25756 ||| ||||||| | || ||||| || |||||||| || ||||| || || | ||| Sbjct 1796 CATGTCGGAAGATCAATCGACCAAAATAACCATGAGCGGCTACAATATTCTAATTTTCTC 1737 Query 25757 CTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCAC-GAATA 25815 ||||||| |||||| |||| || | || ||||| | || ||||| | || | Sbjct 1736 CTTCTTGACCGAATATATAACCTTCATTAGCTTATTCATTCTTTGTGGTTTCCCTGATCA 1677 Query 25816 AGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCT 25875 | ||| || |||| || |||||||| ||||| | | || | ||| || Sbjct 1676 AACTAGGGGTTACCAAG-GAACCACGCATAGCACTGAATAGGGAGCTGCCAATTACACCA 1618 Query 25876 GCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTC 25919 || || || ||||| || || | ||| |||| || ||||| || Sbjct 1617 GCTACGCCTAGCATGTGAAATGAGTGCCTAAGAATGTTGTGCTC 1574 >seq10884 Length=5042 Score = 120 bits (132), Expect = 9e-23 Identities = 116/149 (78%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 25837 CCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAAC 25896 || || |||||| ||||| | || |||||||| || || || || ||||| || || Sbjct 3934 CCATGTATAGCAATGAATAGGGAGCCGCCGAATACACCAGCTACGCCTAGCATGTGAAAT 3875 Query 25897 GGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAA 25956 || |||||||| || ||||| || ||||| || |||| ||| || |||||||| || ||| Sbjct 3874 GGGTGCATAAGAATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAA 3815 Query 25957 ATACCAAGAGGCATACCATCAGAGAAACT 25985 || || ||||||||||||||||| || || Sbjct 3814 ATTCCTAGAGGCATACCATCAGAAAAGCT 3786 >seq8631 Length=609 Score = 109 bits (120), Expect = 2e-19 Identities = 115/150 (77%), Gaps = 1/150 (1%) Strand=Plus/Plus Query 25837 CCGTGCATAGCAGCGAATAAAGCT-CCACCGAATACCCCTGCAACACCGAGCATATGGAA 25895 || ||||||||| |||| | | || |||||||| || || || | ||||| || || Sbjct 189 CCATGCATAGCACTGAATTAGGGAGCCGCCGAATACACCAGCTACGTCTAGCATGTGAAA 248 Query 25896 CGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGA 25955 || |||||||| || ||||| || ||||| || |||| ||| || |||||||| || || Sbjct 249 TGGGTGCATAAGAATGTTGTGCTCGGCCTGGAATACAATCATGAAGTTGAAAGTACCAGA 308 Query 25956 AATACCAAGAGGCATACCATCAGAGAAACT 25985 ||| || ||||||||||||||| | || || Sbjct 309 AATTCCTAGAGGCATACCATCAAAAAAGCT 338 >seq92275 Length=5108 Score = 95.1 bits (104), Expect = 4e-15 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 26239 ATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATA 26298 || || || ||||| || || ||| | || |||| | ||| || ||||| ||||||||| Sbjct 4634 ATGGCACCCGAGATAATATTATTTTCGTAAAGTAGAGATCCAGAAACAGGTTCACGAATA 4693 Query 26299 CCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTT 26358 ||||| ||||| || ||||| ||| ||| || ||||| | |||| | | ||| || Sbjct 4694 CCATCAATATCTACTGGAGGAGCATCAATGAAGGCAATAATAAATACAGAAGTTGCGGTC 4753 Query 26359 AAAAGTGCAGGGATCATTAGTACCCCAAACCACCC 26393 || || | ||||||||| | || |||||||| || Sbjct 4754 AATAGGGTAGGGATCATCAAAACACCAAACCATCC 4788 >seq254652 Length=6058 Score = 87.8 bits (96), Expect = 5e-13 Identities = 193/288 (67%), Gaps = 1/288 (0%) Strand=Plus/Minus Query 26023 GCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATGCCTAGTCTATAA 26082 || |||| || ||| |||||||| || ||| ||| | || | || || || | || Sbjct 956 GCAGCTGTAATAGGAGCTGAATATGCAACAACAATCAAAGGTCGCACACCCAGACGGAAA 897 Query 26083 CTAAGTTCCCATTGTCGTCCCAAGTAAGCTGAGATGCCGATGAGAAAGTGGAACACAATA 26142 ||||||||||| | || |||| |||| | | || | | ||||| | ||||| Sbjct 896 CTAAGTTCCCACTCGCGACCCATGTAACACGCTACACCAAGTAAGAAGTGTAGTACAATT 837 Query 26143 AGTTGATATGGTCCACCGTTATACAA-CCACTCGTCGAGGGTTGCAGCTTCCCAGATTGG 26201 |||| ||| || ||||| || || || ||| || || | || |||||| | ||| | Sbjct 836 AGTTCATAAGGACCACCATTGTATAAACCATTCATCAACAAATGTTGCTTCCTATATTAG 777 Query 26202 GTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGAGATGATGTTGTT 26261 ||| || || | ||| | || |||| | || | | | ||||| || || ||||| Sbjct 776 GTAAAAATGCAAACCTGTAGCTGTAGAAGTAGGAATAACAACACCTGAAATAATATTGTT 717 Query 26262 TCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATC 26309 |||||| |||| | | | | ||| ||| |||||||||| ||||| Sbjct 716 TCCATAAAGTAGAGATGTAAAAATAGGTTCATGAATACCATCAATATC 669 >seq146730 Length=1690 Score = 84.2 bits (92), Expect = 7e-12 Identities = 74/91 (81%), Gaps = 1/91 (1%) Strand=Plus/Minus Query 25449 AGATGCTAAGTC-AAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTA 25507 ||| |||||||| ||||||||| || || || ||| | ||||||||||||||||| || | Sbjct 1067 AGAAGCTAAGTCTAAGAGGGAAATTATGAGCATTATGTTCATGCATAACTTCCATACCAA 1008 Query 25508 AGTCGGCACGGTTAAGAATGTCAGCCCAAGT 25538 || |||||||||| || | ||||||||| Sbjct 1007 GGTTAGCACGGTTAATGATATAAGCCCAAGT 977 >seq138223 Length=10580 Score = 84.2 bits (92), Expect = 7e-12 Identities = 161/235 (69%), Gaps = 13/235 (6%) Strand=Plus/Plus Query 25866 GAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTG 25925 || ||| || || || || | ||| || || || |||||| | |||||||| ||| Sbjct 157 GACTACACCGGCTACTCCTAACATGTGAAATGGGTGCATATTG---TTGTGTTCGACCTA 213 Query 25926 AAAGACAAACATAAAAT--TGAAAGTCCCTG-----AAATACCAAGAGGCATACCATCAG 25978 || ||||| ||| ||| |||| || |||| || |||||||||| ||| Sbjct 214 GAATACAAATATACAATAATGAATTTCAAGATATCAAAATTCCTAGAGGCATAC---CAG 270 Query 25979 AGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGG 26038 | | | ||||| |||| ||||||| |||||| ||| || | | ||||||||| | Sbjct 271 ACATGGTTCCTTGACCAATTGGGTAGATTAAGAAAACAACAGTCCCAGTTGCAACAGGAG 330 Query 26039 CTGAATAAGCTACACATATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCA 26093 || |||| || | | | ||||| | ||||| ||||| | || |||||||||| Sbjct 331 CTAAATATGCAAAAGAAATCCAATGTCTCATACCTAGATGAAAAATAAGTTCCCA 385 >seq36621 Length=13842 Score = 82.4 bits (90), Expect = 2e-11 Identities = 202/305 (66%), Gaps = 1/305 (0%) Strand=Plus/Plus Query 25453 GCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 25512 || ||||| |||||| | || || || ||||| ||||||||||| | ||| | | || Sbjct 7665 GCCAAGTCTAGAGGGGAATTATGAGCATTACGTTCATGCATAACATTCATAACAAGGTTA 7724 Query 25513 GCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGAC 25572 ||| ||||| || ||| | ||||| | || | | || |||||| || | Sbjct 7725 GCATGGTTACTGATATCACCTCAAGTATTCATTACACGGCTGTGACTATCAACTACCAAT 7784 Query 25573 TGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGC 25632 || || || | || || || || ||||||||| || |||| || || | | Sbjct 7785 TGGTTTCGATTTCAACCATTTAGGTTGAAAGCCATAATGCTAGTACCCAACGCAGTGAAC 7844 Query 25633 CATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTATTAAAG 25692 ||||| | | || ||||||||||| || || |||| || | | | | || || Sbjct 7845 CATATACCAAAAACAGGCCAAGCAGCTAGAAAAAAATATATAAAATGAGAGTCGTTGAAA 7904 Query 25693 CTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTC 25752 |||||||| | |||||| | || ||||| || |||||||| || || ||||| || Sbjct 7905 CTAGCATATTAGAAGATCAATCAGCCAAA-TAACCATGAGCATATACGATATTATAAGTT 7963 Query 25753 TCTTC 25757 ||||| Sbjct 7964 TCTTC 7968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151156284926856