Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27]
463,906 sequences; 661,937,708 total letters
Query= NC_016659.1
Length=47536
Score E
Sequences producing significant alignments: (Bits) Value
seq107965 284 4e-72
seq169634 250 8e-62
seq300680 154 4e-33
seq250312 136 1e-27
seq10884 120 9e-23
seq8631 109 2e-19
seq92275 95.1 4e-15
seq254652 87.8 5e-13
seq146730 84.2 7e-12
seq138223 84.2 7e-12
seq36621 82.4 2e-11
>seq107965
Length=6474
Score = 284 bits (314), Expect = 4e-72
Identities = 415/587 (71%), Gaps = 0/587 (0%)
Strand=Plus/Minus
Query 25684 TTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATG 25743
|| || || |||||||| |||||||| | || ||||| || |||||| | || || ||
Sbjct 6459 TTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAACGGCTACGATA 6400
Query 25744 TTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTT 25803
||||| || || |||||| | || ||| | || || | || ||||| | | ||
Sbjct 6399 TTATAAGTTTCATCTTCTAGACCAAATCTGTAACCTTCATTAGCAGATTTATTTTCTGTG 6340
Query 25804 GTTTCACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCA 25863
||||| | || | | || || || | || ||||||||| ||||| | ||
Sbjct 6339 GTTTCCCTGATCAAACAAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCG 6280
Query 25864 CCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCC 25923
|||| ||| || || ||||| ||||| || || || |||||||| || ||||| || |||
Sbjct 6279 CCGATTACACCAGCTACACCTAGCATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGCC 6220
Query 25924 TGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAA 25983
|| || |||| ||| || |||||||| || ||||| || ||||||||||||||||| ||
Sbjct 6219 TGGAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAG 6160
Query 25984 CTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAA 26043
|| ||||| |||| ||||||| ||||| ||| || || ||||||||||| ||||||
Sbjct 6159 CTTCCTTGACCAATTGGGTAGATCAAGAAAACAACACTCGCAGCTGCAACAGGAGCTGAA 6100
Query 26044 TAAGCTACACATATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTGTCGTCCC 26103
|| || ||| ||||| | | ||| || || | | ||||||||||||| | || |||
Sbjct 6099 TATGCAACAACCATCCAAGTTCGCATACCCAGACGAAAACTAAGTTCCCACTCACGACCC 6040
Query 26104 AAGTAAGCTGAGATGCCGATGAGAAAGTGGAACACAATAAGTTGATATGGTCCACCGTTA 26163
| |||| | | || | | ||||| | ||||| |||| ||| || ||||| ||
Sbjct 6039 ATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCATTG 5980
Query 26164 TACAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCG 26223
|| ||||| || || | | || |||||||| |||||||| || || | ||| || ||
Sbjct 5979 TATAACCATTCATCAACAGATGTTGCTTCCCATATTGGGTAAAAATGCAAACCTATAGCT 5920
Query 26224 TTAGATGACGGGACGATTGCCCCTGAGATGATGTTGTTTCCATAGAG 26270
||| || | || | ||| | || || ||||||||||| ||
Sbjct 5919 GCAGAAATAGGAATAATGGTACCTAAAATAATATTGTTTCCATAAAG 5873
>seq169634
Length=720
Score = 250 bits (276), Expect = 8e-62
Identities = 330/458 (72%), Gaps = 0/458 (0%)
Strand=Plus/Plus
Query 25960 CCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCA 26019
|| ||||||||||||||||| || || ||||| |||| ||||||| ||||| ||||||
Sbjct 2 CCTAGAGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCA 61
Query 26020 AATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATGCCTAGTCTA 26079
||| |||||||||| |||||||| || ||| ||||| || | ||| || || |
Sbjct 62 GTTGCAGCTGCAACAGAAGCTGAATATGCAACAACAATCCAAGGTCGCATACCCAGACGG 121
Query 26080 TAACTAAGTTCCCATTGTCGTCCCAAGTAAGCTGAGATGCCGATGAGAAAGTGGAACACA 26139
||||||||||||| | || |||| |||| | | || | | ||||| | |||
Sbjct 122 AAACTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACA 181
Query 26140 ATAAGTTGATATGGTCCACCGTTATACAACCACTCGTCGAGGGTTGCAGCTTCCCAGATT 26199
|| |||| ||| || ||||| || || ||||| || || | || ||| |||||||| |||
Sbjct 182 ATTAGTTCATAAGGACCACCATTGTATAACCATTCATCAACGGATGCTGCTTCCCATATT 241
Query 26200 GGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGAGATGATGTTG 26259
||||| || || | ||| || || ||| | || | || | ||||| || || |||
Sbjct 242 GGGTAAAAATGCAAACCTATAGCTGCAGAAGTAGGAATAATGACACCTGAAATAATATTG 301
Query 26260 TTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGC 26319
|||||||| || | ||| | ||||| |||||||||||||| |||||||| |||||
Sbjct 302 TTTCCATAACTTAGAGATCCATAAACAGGTTCACGAATACCATCAATATCCACTGGAGGA 361
Query 26320 GCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGT 26379
||||||| || || || | |||| | | ||| || || | | ||||||||| |
Sbjct 362 GCAGCAATGAAAGCGATAATAAATACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAA 421
Query 26380 ACCCCAAACCACCCCACATAGAGGCGGTTGTTTGTACT 26417
|| |||||||| || | || || ||||| | |||||
Sbjct 422 ACACCAAACCATCCAATGTAAAGACGGTTTTCGGTACT 459
>seq300680
Length=3790
Score = 154 bits (170), Expect = 4e-33
Identities = 229/322 (71%), Gaps = 2/322 (1%)
Strand=Plus/Plus
Query 25665 GAAATGTAAACTACGGCTATTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTA 25724
|||||||||| ||| || || || |||||||||||||||| | || ||||| ||
Sbjct 353 GAAATGTAAAGAACGAGAGTTGTTGAAACTAGCATACTGGAAGACCAATCGGCCAAAATA 412
Query 25725 GCCATGAGCCGCAACAATGTTATACGTCT-CTTCTTCTTGGCCGAATTTATATCCATAGT 25783
|||||||| || || || ||||| || | |||||||||| |||||||| || || | |
Sbjct 413 ACCATGAGCGGCTACGATATTATAAGTTTTCTTCTTCTTGACCGAATTTGTAACCTTCAT 472
Query 25784 TCTGAGATTCAAGCCCAGTTGTTTCACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCA 25843
| | ||||| | | ||||| || ||| || || |||| || ||||
Sbjct 473 TAGCAAATTCATTTTCTCTGGTTTCCTGATTAAACTAGAGGTTACCAAGGAA-CCATGCA 531
Query 25844 TAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCA 25903
||||| |||| | | ||| ||| || || || | ||||| || || || ||||
Sbjct 532 TAGCATTAAATAGGGAGCTGACGAGTACACCAGCTACGCTTAGCATGTGAAATGGGTGCA 591
Query 25904 TAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAA 25963
|||| || ||||| || |||| || |||| ||| || |||||||| || ||||| || |
Sbjct 592 TAAGAATGTTGTGCTCAACCTGGAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTA 651
Query 25964 GAGGCATACCATCAGAGAAACT 25985
|||||||||||||||| || ||
Sbjct 652 GAGGCATACCATCAGAAAAGCT 673
>seq250312
Length=8481
Score = 136 bits (150), Expect = 1e-27
Identities = 311/464 (67%), Gaps = 13/464 (3%)
Strand=Plus/Minus
Query 25458 GTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCGGCACG 25517
||| |||||||| || || || |||| |||| |||||||||||| || | || ||||
Sbjct 2026 GTCTAGAGGGAAATTATGAGCATTACATTCATACATAACTTCCATACCAAGGTTAGCACA 1967
Query 25518 GTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAA-TCAACGACTGACTGAT 25576
||||| || ||||||||||| | || | | ||| || || || || ||||
Sbjct 1966 GTTAATGATATCAGCCCAAGTATTAATTACA-TGACATTGACTGTCGACTACAGATTGAT 1908
Query 25577 TGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGCCATA 25636
||| |||| || || || || ||||||||||| || || | | ||| |||
Sbjct 1907 GGAAACTAAAACCATTTAGGTTGTAAGCCATAGTGCTGATACCTAACACAATAAACCA-- 1850
Query 25637 TGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTATTAAAGCTAG 25696
|| ||||||| ||| ||||||||||||||| ||| || || || ||||
Sbjct 1849 -------GATAGGCCAAGTAGCTAGGAAGAAATGTAAAAAACGTGAGTTGTTGAAACTAG 1797
Query 25697 CATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTCTCTT 25756
||| ||||||| | || ||||| || |||||||| || ||||| || || | |||
Sbjct 1796 CATGTCGGAAGATCAATCGACCAAAATAACCATGAGCGGCTACAATATTCTAATTTTCTC 1737
Query 25757 CTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCAC-GAATA 25815
||||||| |||||| |||| || | || ||||| | || ||||| | || |
Sbjct 1736 CTTCTTGACCGAATATATAACCTTCATTAGCTTATTCATTCTTTGTGGTTTCCCTGATCA 1677
Query 25816 AGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCT 25875
| ||| || |||| || |||||||| ||||| | | || | ||| ||
Sbjct 1676 AACTAGGGGTTACCAAG-GAACCACGCATAGCACTGAATAGGGAGCTGCCAATTACACCA 1618
Query 25876 GCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTC 25919
|| || || ||||| || || | ||| |||| || ||||| ||
Sbjct 1617 GCTACGCCTAGCATGTGAAATGAGTGCCTAAGAATGTTGTGCTC 1574
>seq10884
Length=5042
Score = 120 bits (132), Expect = 9e-23
Identities = 116/149 (78%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 25837 CCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAAC 25896
|| || |||||| ||||| | || |||||||| || || || || ||||| || ||
Sbjct 3934 CCATGTATAGCAATGAATAGGGAGCCGCCGAATACACCAGCTACGCCTAGCATGTGAAAT 3875
Query 25897 GGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAA 25956
|| |||||||| || ||||| || ||||| || |||| ||| || |||||||| || |||
Sbjct 3874 GGGTGCATAAGAATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAA 3815
Query 25957 ATACCAAGAGGCATACCATCAGAGAAACT 25985
|| || ||||||||||||||||| || ||
Sbjct 3814 ATTCCTAGAGGCATACCATCAGAAAAGCT 3786
>seq8631
Length=609
Score = 109 bits (120), Expect = 2e-19
Identities = 115/150 (77%), Gaps = 1/150 (1%)
Strand=Plus/Plus
Query 25837 CCGTGCATAGCAGCGAATAAAGCT-CCACCGAATACCCCTGCAACACCGAGCATATGGAA 25895
|| ||||||||| |||| | | || |||||||| || || || | ||||| || ||
Sbjct 189 CCATGCATAGCACTGAATTAGGGAGCCGCCGAATACACCAGCTACGTCTAGCATGTGAAA 248
Query 25896 CGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGA 25955
|| |||||||| || ||||| || ||||| || |||| ||| || |||||||| || ||
Sbjct 249 TGGGTGCATAAGAATGTTGTGCTCGGCCTGGAATACAATCATGAAGTTGAAAGTACCAGA 308
Query 25956 AATACCAAGAGGCATACCATCAGAGAAACT 25985
||| || ||||||||||||||| | || ||
Sbjct 309 AATTCCTAGAGGCATACCATCAAAAAAGCT 338
>seq92275
Length=5108
Score = 95.1 bits (104), Expect = 4e-15
Identities = 114/155 (74%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 26239 ATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATA 26298
|| || || ||||| || || ||| | || |||| | ||| || ||||| |||||||||
Sbjct 4634 ATGGCACCCGAGATAATATTATTTTCGTAAAGTAGAGATCCAGAAACAGGTTCACGAATA 4693
Query 26299 CCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTT 26358
||||| ||||| || ||||| ||| ||| || ||||| | |||| | | ||| ||
Sbjct 4694 CCATCAATATCTACTGGAGGAGCATCAATGAAGGCAATAATAAATACAGAAGTTGCGGTC 4753
Query 26359 AAAAGTGCAGGGATCATTAGTACCCCAAACCACCC 26393
|| || | ||||||||| | || |||||||| ||
Sbjct 4754 AATAGGGTAGGGATCATCAAAACACCAAACCATCC 4788
>seq254652
Length=6058
Score = 87.8 bits (96), Expect = 5e-13
Identities = 193/288 (67%), Gaps = 1/288 (0%)
Strand=Plus/Minus
Query 26023 GCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATGCCTAGTCTATAA 26082
|| |||| || ||| |||||||| || ||| ||| | || | || || || | ||
Sbjct 956 GCAGCTGTAATAGGAGCTGAATATGCAACAACAATCAAAGGTCGCACACCCAGACGGAAA 897
Query 26083 CTAAGTTCCCATTGTCGTCCCAAGTAAGCTGAGATGCCGATGAGAAAGTGGAACACAATA 26142
||||||||||| | || |||| |||| | | || | | ||||| | |||||
Sbjct 896 CTAAGTTCCCACTCGCGACCCATGTAACACGCTACACCAAGTAAGAAGTGTAGTACAATT 837
Query 26143 AGTTGATATGGTCCACCGTTATACAA-CCACTCGTCGAGGGTTGCAGCTTCCCAGATTGG 26201
|||| ||| || ||||| || || || ||| || || | || |||||| | ||| |
Sbjct 836 AGTTCATAAGGACCACCATTGTATAAACCATTCATCAACAAATGTTGCTTCCTATATTAG 777
Query 26202 GTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGAGATGATGTTGTT 26261
||| || || | ||| | || |||| | || | | | ||||| || || |||||
Sbjct 776 GTAAAAATGCAAACCTGTAGCTGTAGAAGTAGGAATAACAACACCTGAAATAATATTGTT 717
Query 26262 TCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATC 26309
|||||| |||| | | | | ||| ||| |||||||||| |||||
Sbjct 716 TCCATAAAGTAGAGATGTAAAAATAGGTTCATGAATACCATCAATATC 669
>seq146730
Length=1690
Score = 84.2 bits (92), Expect = 7e-12
Identities = 74/91 (81%), Gaps = 1/91 (1%)
Strand=Plus/Minus
Query 25449 AGATGCTAAGTC-AAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTA 25507
||| |||||||| ||||||||| || || || ||| | ||||||||||||||||| || |
Sbjct 1067 AGAAGCTAAGTCTAAGAGGGAAATTATGAGCATTATGTTCATGCATAACTTCCATACCAA 1008
Query 25508 AGTCGGCACGGTTAAGAATGTCAGCCCAAGT 25538
|| |||||||||| || | |||||||||
Sbjct 1007 GGTTAGCACGGTTAATGATATAAGCCCAAGT 977
>seq138223
Length=10580
Score = 84.2 bits (92), Expect = 7e-12
Identities = 161/235 (69%), Gaps = 13/235 (6%)
Strand=Plus/Plus
Query 25866 GAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTG 25925
|| ||| || || || || | ||| || || || |||||| | |||||||| |||
Sbjct 157 GACTACACCGGCTACTCCTAACATGTGAAATGGGTGCATATTG---TTGTGTTCGACCTA 213
Query 25926 AAAGACAAACATAAAAT--TGAAAGTCCCTG-----AAATACCAAGAGGCATACCATCAG 25978
|| ||||| ||| ||| |||| || |||| || |||||||||| |||
Sbjct 214 GAATACAAATATACAATAATGAATTTCAAGATATCAAAATTCCTAGAGGCATAC---CAG 270
Query 25979 AGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGG 26038
| | | ||||| |||| ||||||| |||||| ||| || | | ||||||||| |
Sbjct 271 ACATGGTTCCTTGACCAATTGGGTAGATTAAGAAAACAACAGTCCCAGTTGCAACAGGAG 330
Query 26039 CTGAATAAGCTACACATATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCA 26093
|| |||| || | | | ||||| | ||||| ||||| | || ||||||||||
Sbjct 331 CTAAATATGCAAAAGAAATCCAATGTCTCATACCTAGATGAAAAATAAGTTCCCA 385
>seq36621
Length=13842
Score = 82.4 bits (90), Expect = 2e-11
Identities = 202/305 (66%), Gaps = 1/305 (0%)
Strand=Plus/Plus
Query 25453 GCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 25512
|| ||||| |||||| | || || || ||||| ||||||||||| | ||| | | ||
Sbjct 7665 GCCAAGTCTAGAGGGGAATTATGAGCATTACGTTCATGCATAACATTCATAACAAGGTTA 7724
Query 25513 GCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGAC 25572
||| ||||| || ||| | ||||| | || | | || |||||| || |
Sbjct 7725 GCATGGTTACTGATATCACCTCAAGTATTCATTACACGGCTGTGACTATCAACTACCAAT 7784
Query 25573 TGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGC 25632
|| || || | || || || || ||||||||| || |||| || || | |
Sbjct 7785 TGGTTTCGATTTCAACCATTTAGGTTGAAAGCCATAATGCTAGTACCCAACGCAGTGAAC 7844
Query 25633 CATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTATTAAAG 25692
||||| | | || ||||||||||| || || |||| || | | | | || ||
Sbjct 7845 CATATACCAAAAACAGGCCAAGCAGCTAGAAAAAAATATATAAAATGAGAGTCGTTGAAA 7904
Query 25693 CTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTC 25752
|||||||| | |||||| | || ||||| || |||||||| || || ||||| ||
Sbjct 7905 CTAGCATATTAGAAGATCAATCAGCCAAA-TAACCATGAGCATATACGATATTATAAGTT 7963
Query 25753 TCTTC 25757
|||||
Sbjct 7964 TCTTC 7968
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 151156284926856
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