Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq228143 102 6e-17 seq284040 100 2e-16 seq25275 98.7 8e-16 seq156932 96.9 3e-15 >seq228143 Length=6931 Score = 102 bits (112), Expect = 6e-17 Identities = 156/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||| | ||| || || |||||| ||||| || ||||||| || | | Sbjct 3542 AGACGAAGCACAAGATGCAGGGTAGACTCTTTCTGAATGTTATAATCAGCAAGTGTCCTC 3483 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCG-TGGGAACGCCCTC 48667 | || ||||||||||| || ||||| |||| | ||| ||||||| ||||| | ||||| Sbjct 3482 CCATCTTCCAACTGCTTCCCTGCAAAGATCAACCTCTGCTGATCCGGTGGGATC-CCCTC 3424 Query 48668 CTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGT 48727 |||||| |||||| || ||| | | | | || || |||||||||| || Sbjct 3423 CTTGTCTTGGATCTTTGCCTTCACATTATCAATCGTATCCGAGCTTTCCACCTCCAGAGT 3364 Query 48728 AATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 ||||| ||||| ||||| || || || || ||||||||| Sbjct 3363 GATCGTCTTTCCAGTCAACGTCTTAACGAATATCTGCATC 3324 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||||||||| | ||| | ||| || || ||| || || || |||||||||| Sbjct 3323 CCTCCCCTTAGCCGAAGCACAAGATGAAGGGTCGACTCCTTCTGGATGTTGTAATCAGCC 3264 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | || | || ||||| ||||| || ||||| |||| | ||| || |||| || Sbjct 3263 AACGTACGCCCATCTTCCAATTGCTTCCCAGCAAAGATCAACCTCTGCTGGTCCGGTGGG 3204 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||| ||||| || ||||| || ||| | | | || || ||| ||| Sbjct 3203 ATGCCTTCCTTATCCTGGATCTTAGCCTTCACATTGTCAATGGTGTCCGAACTCTCGACC 3144 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || || || ||||| ||||| || || |||||||||||||| Sbjct 3143 TCCAAAGTGATGGTCTTTCCAGTCAACGTCTTAACAAAAATCTGCAT 3097 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||| ||| || || ||| || || || ||||| |||| || |||| | || ||| Sbjct 3077 ACCAGATGGAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTTCGGCCATCTTCC 3018 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | ||| || || ||||| |||| | |||||| || | || | ||| ||||| || Sbjct 3017 AGCTGTTTCCCAGCAAAGATCAACCTCTGTTGGTCTGGTGGGATGCCTTCCTTATCTTGG 2958 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| ||| ||| | | | | ||||| ||| ||||||| || || || ||| Sbjct 2957 ATCTTAGCTTTCACATTATCAATGGTGTCTGAACTCTCAACCTCCAAAGTGATGGTCTTT 2898 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || || || ||||||||||| Sbjct 2897 CCGGTCAAGGTCTTAACGAAAATCTGCAT 2869 >seq284040 Length=2693 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| | ||||| |||| ||| | |||| ||| || || || |||||||| | Sbjct 985 CCTCCCCTCAACCGCAGAACCAGATGCAACGTGGACTCCTTCTGGATGTTGTAATCGGCC 926 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | | | |||| || | |||||| ||||| || |||| ||||| || |||| || Sbjct 925 AAAGTCCTTCCGTCTTCGAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCCGGTGGG 866 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || |||||||| |||||| || || | | | | || || |||||| Sbjct 865 ATTCCTTCCTTGTCCTGAATCTTCGCCTTCACGTTATCGATCGTGTCGGAGCTTTCCACC 806 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 |||| ||| ||||||||||| ||||| || || || || ||||||||| Sbjct 805 TCCAACGTGATCGTTTTTCCGGTCAACGTCTTCACGAAGATCTGCATC 758 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || || ||| ||| || || || |||||||| | ||| | || | || |||| |||| Sbjct 1189 TGCAGGGTGGACTCCTTCTGGATGTTGTAATCCGCCAGAGTCCGGCCATCTTCCAGCTGC 1130 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || ||||||||||||| | ||| || |||| |||| ||||| || || |||||| Sbjct 1129 TTTCCGGCAAATATCAACCTCTGCTGGTCCGGTGGAATCCCCTCTTTATCCTGAATCTTG 1070 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || ||| | | | | || || ||||||||||| |||||||| || || ||| Sbjct 1069 GCCTTGACATTATCGATCGTATCGGAGCTCTCCACCTCCAGAGTAATCGTCTTCCCGGTC 1010 Query 48744 AAAGTTTTTACAAAAATCTGCATC 48767 || || || || || ||||||||| Sbjct 1009 AACGTCTTCACGAATATCTGCATC 986 >seq25275 Length=8276 Score = 98.7 bits (108), Expect = 8e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||||||| || || ||| || || || || ||||| | ||| | | | || || Sbjct 6139 ACCAAATGAAGGGTAGACTCCTTCTGGATGTTATAATCCGCAAGAGTCCTTCCATCCTCA 6080 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCG-TGGGAACGCCCTCCTTGTCGCT 48676 | |||||| || ||||| ||||| | ||| ||||||| ||||| | ||||||||||| Sbjct 6079 AGCTGCTTCCCAGCAAAAATCAGCCTCTGCTGATCCGGTGGGATC-CCCTCCTTGTCCTG 6021 Query 48677 AATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTT 48736 |||||| ||| ||| | | | || || ||||||||||| ||| || || || Sbjct 6020 AATCTTCGCTTTCACATTGTCGATCGTGTCCGAACTCTCCACCTCCAGCGTGATGGTCTT 5961 Query 48737 TCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || ||||| || || ||||| ||||||||| Sbjct 5960 CCCTGTCAACGTCTTAACAAAGATCTGCATC 5930 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 ||||| |||| || | ||||| || || ||| ||| || || || |||||||| | Sbjct 5245 CCGCCTCTTAAACGAAGAACCAAGTGAAGGGTGGACTCCTTCTGTATGTTGTAATCGGCC 5186 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | | ||| |||| || | |||||| |||||||| |||| | ||| || || | |||| Sbjct 5185 AAAGTGCGACCGTCCTCGAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGA 5126 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||||||||||| || || || || | | | || || || ||| || Sbjct 5125 ATACCCTCCTTGTCTTGGATTTTCGCCTTCACGTTATCGATAGTGTCCGAGCTCTCGACT 5066 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| ||| || ||||| || || | ||||| ||||| || ||||| Sbjct 5065 TCCAACGTGATGGTTTTCCCTGTTAGGGTTTTGACAAAGATTTGCAT 5019 >seq156932 Length=6713 Score = 96.9 bits (106), Expect = 3e-15 Identities = 137/193 (71%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || || ||||||||||| | ||| | ||| | || ||||||||||| || || || Sbjct 3564 CTCCTTCTGGATATTGTAATCCGCAAGAGTACGACCATCCTCCAACTGCTTCCCTGCGAA 3623 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 ||||| | ||| || || | |||| || ||||| || ||||||| || ||| Sbjct 3624 TATCAACCTCTGCTGGTCTGGTGGAATCCCTTCCTTATCCTGAATCTTTGCCTTCACATT 3683 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | || || ||||||||||| || ||||| || || || ||||| || || Sbjct 3684 GTCAATGGTATCCGAGCTCTCCACCTCCAAGGTGATCGTCTTCCCGGTTAAAGTCTTGAC 3743 Query 48755 AAAAATCTGCATC 48767 |||||||||||| Sbjct 3744 GAAAATCTGCATC 3756 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || ||| ||| ||||| || ||||| || | |||| |||| |||| || Sbjct 4231 ACCAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGGCTAGAGTTCGGCCGTCCTCG 4290 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 | ||| ||||||||||| ||||| | ||| ||||| | |||| || |||||||| Sbjct 4291 AGCTGTTTACCGGCAAAGATCAGCCTCTGCTGATCTGGAGGAATCCCTTCCTTGTC 4346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 378783834283638