Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27]
463,906 sequences; 661,937,708 total letters
Query= NC_019443.1
Length=172879
Score E
Sequences producing significant alignments: (Bits) Value
seq107965 318 6e-82
seq250312 228 9e-55
seq169634 206 3e-48
seq300680 199 4e-46
seq10884 129 6e-25
seq8631 125 8e-24
seq36621 116 4e-21
seq254652 98.7 1e-15
seq92275 96.9 4e-15
seq264332 95.1 1e-14
>seq107965
Length=6474
Score = 318 bits (352), Expect = 6e-82
Identities = 430/599 (72%), Gaps = 0/599 (0%)
Strand=Plus/Plus
Query 162661 CTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGT 162720
|| || ||||| ||||| || || | ||| | | |||||| ||| ||||| |||
Sbjct 5870 CTGCTTTATGGAAACAATATTATTTTAGGTACCATTATTCCTATTTCTGCAGCTATAGGT 5929
Query 162721 CTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTGGA 162780
| || || || || || ||||||||| || || ||||||| ||||| || ||||||||
Sbjct 5930 TTGCATTTTTACCCAATATGGGAAGCAACATCTGTTGATGAATGGTTATACAATGGTGGT 5989
Query 162781 CCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGTGGTCGTCAG 162840
|||| |||| | || | |||||| | | || | | ||| |||||| ||
Sbjct 5990 CCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAG 6049
Query 162841 TGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCA 162900
||||||||| || || | |||||||| ||||||| ||||||||| || || ||
Sbjct 6050 TGGGAACTTAGTTTTCGTCTGGGTATGCGAACTTGGATGGTTGTTGCATATTCAGCTCCT 6109
Query 162901 GTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGAC 162960
|| | || || | ||| |||||| |||| || | |||||||| || |||||
Sbjct 6110 GTTGCAGCTGCGAGTGTTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGAT 6169
Query 162961 GCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCAC 163020
| |||||||| || |||||||||||||| |||| |||| | || ||||| || ||||||
Sbjct 6170 GGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCAC 6229
Query 163021 AACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACTC 163080
||||| || |||||||| || || ||| | || || || |||||| |||| || || ||
Sbjct 6230 AACATTCTTATGCACCCATTTCACATGCTAGGTGTAGCTGGTGTAATCGGCGGCTCCCTA 6289
Query 163081 TTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACTGAGCAA 163140
|| ||||||||||| ||||| | || || |||| | | ||||| ||||| || || |
Sbjct 6290 TTCAGTGCTATGCATGGTTCCTTGGTAACCTCTTGTTTGATCAGGGAAACCACAGAAAAT 6349
Query 163141 GAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTGCT 163200
| || || | ||||| | || || | |||||| || ||||| || || || ||
Sbjct 6350 AAATCTGCTAATGAAGGTTACAGATTTGGTCTAGAAGATGAAACTTATAATATCGTAGCC 6409
Query 163201 GCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTCACGTTC 163259
| |||||| || ||||| || ||||||||||| ||||| |||||||||||| |||||
Sbjct 6410 GTTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTC 6468
>seq250312
Length=8481
Score = 228 bits (252), Expect = 9e-55
Identities = 327/462 (71%), Gaps = 9/462 (2%)
Strand=Plus/Plus
Query 163015 GAGCACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGT 163074
||||||||||| || | |||| | || || ||| | || || || |||||| | || |
Sbjct 1574 GAGCACAACATTCTTAGGCACTCATTTCACATGCTAGGCGTAGCTGGTGTAATTGGCAGC 1633
Query 163075 TCACTCTTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACT 163134
|| || || |||||||||| ||||| | || || || | | ||||| ||||| ||
Sbjct 1634 TCCCTATTCAGTGCTATGCGTGGTTCCTTGGTAACCCCTAGTTTGATCAGGGAAACCACA 1693
Query 163135 GAGCAAGAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATT 163194
|| | || | | || | ||||||| ||||| ||||||| ||| | ||| || |||
Sbjct 1694 AAGAATGAATAAGCTAATGAAGGTTATATATTCGGTCAAGAAGGAGAAAATTAGAATATT 1753
Query 163195 GTTGCTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTCA 163254
|| || |||||||| || |||||||| |||||||||| |||| |||||||||||||
Sbjct 1754 GTAGCCGCTCATGGTTATTTTGGTCGATTGATCTTCCGACATGCTAGTTTCAACAACTCA 1813
Query 163255 CGTTCACTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATG 163314
|||| | || |||||||| ||| | | ||| |||||||| | || |
Sbjct 1814 CGTTTTTTACATTTCTTCCTAGCTACTTGGCCT---------ATCTGGTTTATTGTGTTA 1864
Query 163315 GGTGTGTCAACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGAC 163374
||| | |||||||| | |||||| || ||||| | ||| | ||||| || || |||
Sbjct 1865 GGTATCAGCACTATGGCTTACAACCTAAATGGTTTTAGTTTCCATCAATCTGTAGTCGAC 1924
Query 163375 GCAGGTGGTAAAGTGATTCCTACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTATG 163434
|| | || ||| ||||||||| |||||| ||||| | || |||||||||
Sbjct 1925 AGTCAATGTCATGTAATTAATACTTGGGCTGATATCATTAACTGTGCTAACCTTGGTATG 1984
Query 163435 GAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGAC 163476
||||||||| | || |||||||||| || ||||| || |||
Sbjct 1985 GAAGTTATGTATGAATGTAATGCTCATAATTTCCCTCTAGAC 2026
>seq169634
Length=720
Score = 206 bits (228), Expect = 3e-48
Identities = 306/434 (71%), Gaps = 0/434 (0%)
Strand=Plus/Minus
Query 162541 GGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCATT 162600
|| ||||| ||||| |||||||||||| ||| | | ||| | || || || ||
Sbjct 435 GGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTATC 376
Query 162601 GCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCA 162660
|| |||||||| || |||||||| ||||| |||||||| | ||||||||| || ||
Sbjct 375 GCTTTCATTGCTGCTCCTCCAGTGGATATTGATGGTATTCGTGAACCTGTTTATGGATCT 316
Query 162661 CTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGT 162720
|| ||||| ||||| || || || |||| | |||||| ||| ||||| |||
Sbjct 315 CTAAGTTATGGAAACAATATTATTTCAGGTGTCATTATTCCTACTTCTGCAGCTATAGGT 256
Query 162721 CTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTGGA 162780
| || || || || || |||||||||||| | ||||||| ||||| || ||||||||
Sbjct 255 TTGCATTTTTACCCAATATGGGAAGCAGCATCCGTTGATGAATGGTTATACAATGGTGGT 196
Query 162781 CCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGTGGTCGTCAG 162840
|||| |||| | || | |||||| | | || | | ||| |||||| ||
Sbjct 195 CCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAG 136
Query 162841 TGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCA 162900
||||||||| || ||| | |||||||| |||||||| ||||||||| || || |
Sbjct 135 TGGGAACTTAGTTTCCGTCTGGGTATGCGACCTTGGATTGTTGTTGCATATTCAGCTTCT 76
Query 162901 GTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGAC 162960
|| | || ||| ||||| |||||| |||| || | |||||||| || |||||
Sbjct 75 GTTGCAGCTGCAACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGAT 16
Query 162961 GCAATGCCTCTTGG 162974
| |||||||| ||
Sbjct 15 GGTATGCCTCTAGG 2
>seq300680
Length=3790
Score = 199 bits (220), Expect = 4e-46
Identities = 231/309 (75%), Gaps = 2/309 (1%)
Strand=Plus/Minus
Query 162952 TTCTCTGACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAA 163011
|| ||||| | |||||||| || |||||||||||||| |||| |||| | || |||||
Sbjct 670 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 611
Query 163012 GCAGAGCACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGT 163071
| ||||||||||| || |||||||| || || ||| | | || || |||||| |||
Sbjct 610 GTTGAGCACAACATTCTTATGCACCCATTTCACATGCTAAGCGTAGCTGGTGTACTCGTC 551
Query 163072 GGTTCACTCTTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACT 163131
| || || |||| ||||||||| ||||| | || || ||| | | ||||| |||||
Sbjct 550 AGCTCCCTATTTAATGCTATGCATGGTTCCTTGGTAACCTCTAGTTTAATCAG-GAAACC 492
Query 163132 ACTGAGCAAGAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGAAG-AGACTTACAA 163190
| || | || | || | ||||| || ||||| |||||||||| | ||||| ||
Sbjct 491 AGAGAAAATGAATTTGCTAATGAAGGTTACAAATTCGGTCAAGAAGAAGAAAACTTATAA 432
Query 163191 CATTGTTGCTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGCATCTTTCAACAA 163250
|| || || |||||||| || ||||| || ||| ||||||||||||| |||||||||
Sbjct 431 TATCGTAGCCGCTCATGGTTATTTTGGCCGATTGGTCTTCCAGTATGCTAGTTTCAACAA 372
Query 163251 CTCACGTTC 163259
||| |||||
Sbjct 371 CTCTCGTTC 363
>seq10884
Length=5042
Score = 129 bits (142), Expect = 6e-25
Identities = 118/149 (79%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 162952 TTCTCTGACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAA 163011
|| ||||| | |||||||| || |||||||||||||| |||| |||| | || |||||
Sbjct 3789 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 3848
Query 163012 GCAGAGCACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGT 163071
|| ||||||||||| || |||||||| || || ||| | || || || |||||||||||
Sbjct 3849 GCTGAGCACAACATTCTTATGCACCCATTTCACATGCTAGGCGTAGCTGGTGTATTCGGC 3908
Query 163072 GGTTCACTCTTTAGTGCTATGCACGGTTC 163100
|| || || || | |||||| || |||||
Sbjct 3909 GGCTCCCTATTCATTGCTATACATGGTTC 3937
>seq8631
Length=609
Score = 125 bits (138), Expect = 8e-24
Identities = 117/146 (80%), Gaps = 2/146 (1%)
Strand=Plus/Minus
Query 162964 ATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCACAAC 163023
|||||||| || |||||||||||||| |||| |||| | || ||||| || |||||||||
Sbjct 323 ATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCCGAGCACAAC 264
Query 163024 ATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACT-CTT 163082
|| || |||||||| || || ||| | | || || ||||||||||| || || || ||
Sbjct 263 ATTCTTATGCACCCATTTCACATGCTAGACGTAGCTGGTGTATTCGGCGGCTCCCTAATT 204
Query 163083 TAGTGCTATGCACGGTTCTCTTGTTA 163108
||||||||||| ||||| |||| ||
Sbjct 203 CAGTGCTATGCATGGTTC-CTTGGTA 179
>seq36621
Length=13842
Score = 116 bits (128), Expect = 4e-21
Identities = 217/314 (69%), Gaps = 11/314 (4%)
Strand=Plus/Minus
Query 163177 GAAGAGACTTACAACATTGTTGCTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTAT 163236
||||| ||||| || || || ||||||||| || ||||| | ||||||||| | |||
Sbjct 7968 GAAGAAACTTATAATATCGTATATGCTCATGGTTA-TTTGGCTGATTGATCTTCTAATAT 7910
Query 163237 GCATCTTTCAACAACTCACGTTCACTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGC 163296
|| ||||||| |||| | || | | || || || ||||| | ||||| | |
Sbjct 7909 GCTAGTTTCAACGACTCTCATTTTATATATTTTTTTCTAGCTGCTTGGCCTGTTTTTGGT 7850
Query 163297 ATCTGGTTCACTGCAATGGGTGTGTCAACTATGGCATTCAACCTTAACGGTTTCAACTTC 163356
|| ||||||||||| ||||| | |||||| |||||||| || |||| ||
Sbjct 7849 ATATGGTTCACTGCGTTGGGTACTAGCATTATGGCTTTCAACCTAAATGGTTGAAATCGA 7790
Query 163357 AACCAATCCGTCGTTGA----CGCAGGTG-GTAAAGTGATTCCTACTTGGGCAGATATCC 163411
||||||| || ||||| | ||| | |||| ||| |||||| | ||||||
Sbjct 7789 AACCAATTGGTAGTTGATAGTCACAGCCGTGTAA--TGA---ATACTTGAGGTGATATCA 7735
Query 163412 TTAACAGAGCAGGACTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCAC 163471
|||| || |||| |||| | |||||||| || ||||||||||| || | ||| |
Sbjct 7734 GTAACCATGCTAACCTTGTTATGAATGTTATGCATGAACGTAATGCTCATAATTCCCCTC 7675
Query 163472 TTGACCTTGCTGCT 163485
| ||| | ||||||
Sbjct 7674 TAGACTTGGCTGCT 7661
>seq254652
Length=6058
Score = 98.7 bits (108), Expect = 1e-15
Identities = 193/284 (68%), Gaps = 1/284 (0%)
Strand=Plus/Plus
Query 162617 CTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCACTTCTCTATGGTAACA 162676
||||| ||||| |||||||| |||||| || || || || ||||| ||||
Sbjct 661 CTCCAAAAGATATTGATGGTATTCATGAACCTATTTTTACATCTCTACTTTATGGAAACA 720
Query 162677 ACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGTCTTCACTTCTATCCTA 162736
| || || || |||| ||| |||||| ||| | |||| ||| | || || || | |
Sbjct 721 ATATTATTTCAGGTGTTGTTATTCCTACTTCTACAGCTACAGGTTTGCATTTTTACCTAA 780
Query 162737 TCTGGGAAGCAGCAACTCTTGATGAGTGGTTG-TATAATGGTGGACCTTTCCAACTTGTA 162795
| | ||||||| || | ||||||| ||||| || |||||||| |||| |||| |
Sbjct 781 TATAGGAAGCAACATTTGTTGATGAATGGTTTATACAATGGTGGTCCTTATGAACTAATT 840
Query 162796 GTCTTCCACTTCCTTATCGGAATCACAGCATACTGTGGTCGTCAGTGGGAACTTTCTTAC 162855
|| | |||||| | | || | | ||| ||||| ||||||||||| || |
Sbjct 841 GTACTACACTTCTTACTTGGTGTAGCGTGTTACATGGGTCGCGAGTGGGAACTTAGTTTC 900
Query 162856 CGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCACC 162899
|| | ||| |||| |||| ||| ||||||||| || || ||
Sbjct 901 CGTCTGGGTGTGCGACCTTTGATTGTTGTTGCATATTCAGCTCC 944
>seq92275
Length=5108
Score = 96.9 bits (106), Expect = 4e-15
Identities = 122/168 (73%), Gaps = 0/168 (0%)
Strand=Plus/Minus
Query 162540 CGGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCAT 162599
||| ||||| ||||| |||||||||||| | | | | ||| | || || || ||
Sbjct 4789 CGGATGGTTTGGTGTTTTGATGATCCCTACCCTATTGACCGCAACTTCTGTATTTATTAT 4730
Query 162600 TGCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTC 162659
||| ||||||| || |||||||| ||||| |||||||| | ||||||||| | || ||
Sbjct 4729 TGCCTTCATTGATGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATC 4670
Query 162660 ACTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTC 162707
|| || || | || || || ||||| ||||| | |||||| |||
Sbjct 4669 TCTACTTTACGAAAATAATATTATCTCGGGTGCCATTATTCCTACTTC 4622
>seq264332
Length=996
Score = 95.1 bits (104), Expect = 1e-14
Identities = 79/97 (81%), Gaps = 0/97 (0%)
Strand=Plus/Minus
Query 163214 TTGGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTCACGTTCACTTCACTTCTTCC 163273
|||| || ||||||||||| ||||| |||||||||||| ||||| | || |||||||
Sbjct 274 TTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCC 215
Query 163274 TTGCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGC 163310
| ||||| | ||||| || ||||||||||||||||
Sbjct 214 TAGCTGCTTGGCCTGTAGTAGGCATCTGGTTCACTGC 178
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 549877558034640
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