Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq107965 318 6e-82 seq250312 228 9e-55 seq169634 206 3e-48 seq300680 199 4e-46 seq10884 129 6e-25 seq8631 125 8e-24 seq36621 116 4e-21 seq254652 98.7 1e-15 seq92275 96.9 4e-15 seq264332 95.1 1e-14 >seq107965 Length=6474 Score = 318 bits (352), Expect = 6e-82 Identities = 430/599 (72%), Gaps = 0/599 (0%) Strand=Plus/Plus Query 162661 CTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGT 162720 || || ||||| ||||| || || | ||| | | |||||| ||| ||||| ||| Sbjct 5870 CTGCTTTATGGAAACAATATTATTTTAGGTACCATTATTCCTATTTCTGCAGCTATAGGT 5929 Query 162721 CTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTGGA 162780 | || || || || || ||||||||| || || ||||||| ||||| || |||||||| Sbjct 5930 TTGCATTTTTACCCAATATGGGAAGCAACATCTGTTGATGAATGGTTATACAATGGTGGT 5989 Query 162781 CCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGTGGTCGTCAG 162840 |||| |||| | || | |||||| | | || | | ||| |||||| || Sbjct 5990 CCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAG 6049 Query 162841 TGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCA 162900 ||||||||| || || | |||||||| ||||||| ||||||||| || || || Sbjct 6050 TGGGAACTTAGTTTTCGTCTGGGTATGCGAACTTGGATGGTTGTTGCATATTCAGCTCCT 6109 Query 162901 GTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGAC 162960 || | || || | ||| |||||| |||| || | |||||||| || ||||| Sbjct 6110 GTTGCAGCTGCGAGTGTTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGAT 6169 Query 162961 GCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCAC 163020 | |||||||| || |||||||||||||| |||| |||| | || ||||| || |||||| Sbjct 6170 GGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCAC 6229 Query 163021 AACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACTC 163080 ||||| || |||||||| || || ||| | || || || |||||| |||| || || || Sbjct 6230 AACATTCTTATGCACCCATTTCACATGCTAGGTGTAGCTGGTGTAATCGGCGGCTCCCTA 6289 Query 163081 TTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACTGAGCAA 163140 || ||||||||||| ||||| | || || |||| | | ||||| ||||| || || | Sbjct 6290 TTCAGTGCTATGCATGGTTCCTTGGTAACCTCTTGTTTGATCAGGGAAACCACAGAAAAT 6349 Query 163141 GAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTGCT 163200 | || || | ||||| | || || | |||||| || ||||| || || || || Sbjct 6350 AAATCTGCTAATGAAGGTTACAGATTTGGTCTAGAAGATGAAACTTATAATATCGTAGCC 6409 Query 163201 GCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTCACGTTC 163259 | |||||| || ||||| || ||||||||||| ||||| |||||||||||| ||||| Sbjct 6410 GTTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTC 6468 >seq250312 Length=8481 Score = 228 bits (252), Expect = 9e-55 Identities = 327/462 (71%), Gaps = 9/462 (2%) Strand=Plus/Plus Query 163015 GAGCACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGT 163074 ||||||||||| || | |||| | || || ||| | || || || |||||| | || | Sbjct 1574 GAGCACAACATTCTTAGGCACTCATTTCACATGCTAGGCGTAGCTGGTGTAATTGGCAGC 1633 Query 163075 TCACTCTTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACT 163134 || || || |||||||||| ||||| | || || || | | ||||| ||||| || Sbjct 1634 TCCCTATTCAGTGCTATGCGTGGTTCCTTGGTAACCCCTAGTTTGATCAGGGAAACCACA 1693 Query 163135 GAGCAAGAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATT 163194 || | || | | || | ||||||| ||||| ||||||| ||| | ||| || ||| Sbjct 1694 AAGAATGAATAAGCTAATGAAGGTTATATATTCGGTCAAGAAGGAGAAAATTAGAATATT 1753 Query 163195 GTTGCTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTCA 163254 || || |||||||| || |||||||| |||||||||| |||| ||||||||||||| Sbjct 1754 GTAGCCGCTCATGGTTATTTTGGTCGATTGATCTTCCGACATGCTAGTTTCAACAACTCA 1813 Query 163255 CGTTCACTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATG 163314 |||| | || |||||||| ||| | | ||| |||||||| | || | Sbjct 1814 CGTTTTTTACATTTCTTCCTAGCTACTTGGCCT---------ATCTGGTTTATTGTGTTA 1864 Query 163315 GGTGTGTCAACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGAC 163374 ||| | |||||||| | |||||| || ||||| | ||| | ||||| || || ||| Sbjct 1865 GGTATCAGCACTATGGCTTACAACCTAAATGGTTTTAGTTTCCATCAATCTGTAGTCGAC 1924 Query 163375 GCAGGTGGTAAAGTGATTCCTACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTATG 163434 || | || ||| ||||||||| |||||| ||||| | || ||||||||| Sbjct 1925 AGTCAATGTCATGTAATTAATACTTGGGCTGATATCATTAACTGTGCTAACCTTGGTATG 1984 Query 163435 GAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGAC 163476 ||||||||| | || |||||||||| || ||||| || ||| Sbjct 1985 GAAGTTATGTATGAATGTAATGCTCATAATTTCCCTCTAGAC 2026 >seq169634 Length=720 Score = 206 bits (228), Expect = 3e-48 Identities = 306/434 (71%), Gaps = 0/434 (0%) Strand=Plus/Minus Query 162541 GGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCATT 162600 || ||||| ||||| |||||||||||| ||| | | ||| | || || || || Sbjct 435 GGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTATC 376 Query 162601 GCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCA 162660 || |||||||| || |||||||| ||||| |||||||| | ||||||||| || || Sbjct 375 GCTTTCATTGCTGCTCCTCCAGTGGATATTGATGGTATTCGTGAACCTGTTTATGGATCT 316 Query 162661 CTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGT 162720 || ||||| ||||| || || || |||| | |||||| ||| ||||| ||| Sbjct 315 CTAAGTTATGGAAACAATATTATTTCAGGTGTCATTATTCCTACTTCTGCAGCTATAGGT 256 Query 162721 CTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTGGA 162780 | || || || || || |||||||||||| | ||||||| ||||| || |||||||| Sbjct 255 TTGCATTTTTACCCAATATGGGAAGCAGCATCCGTTGATGAATGGTTATACAATGGTGGT 196 Query 162781 CCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGTGGTCGTCAG 162840 |||| |||| | || | |||||| | | || | | ||| |||||| || Sbjct 195 CCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAG 136 Query 162841 TGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCA 162900 ||||||||| || ||| | |||||||| |||||||| ||||||||| || || | Sbjct 135 TGGGAACTTAGTTTCCGTCTGGGTATGCGACCTTGGATTGTTGTTGCATATTCAGCTTCT 76 Query 162901 GTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGAC 162960 || | || ||| ||||| |||||| |||| || | |||||||| || ||||| Sbjct 75 GTTGCAGCTGCAACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGAT 16 Query 162961 GCAATGCCTCTTGG 162974 | |||||||| || Sbjct 15 GGTATGCCTCTAGG 2 >seq300680 Length=3790 Score = 199 bits (220), Expect = 4e-46 Identities = 231/309 (75%), Gaps = 2/309 (1%) Strand=Plus/Minus Query 162952 TTCTCTGACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAA 163011 || ||||| | |||||||| || |||||||||||||| |||| |||| | || ||||| Sbjct 670 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 611 Query 163012 GCAGAGCACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGT 163071 | ||||||||||| || |||||||| || || ||| | | || || |||||| ||| Sbjct 610 GTTGAGCACAACATTCTTATGCACCCATTTCACATGCTAAGCGTAGCTGGTGTACTCGTC 551 Query 163072 GGTTCACTCTTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACT 163131 | || || |||| ||||||||| ||||| | || || ||| | | ||||| ||||| Sbjct 550 AGCTCCCTATTTAATGCTATGCATGGTTCCTTGGTAACCTCTAGTTTAATCAG-GAAACC 492 Query 163132 ACTGAGCAAGAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGAAG-AGACTTACAA 163190 | || | || | || | ||||| || ||||| |||||||||| | ||||| || Sbjct 491 AGAGAAAATGAATTTGCTAATGAAGGTTACAAATTCGGTCAAGAAGAAGAAAACTTATAA 432 Query 163191 CATTGTTGCTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGCATCTTTCAACAA 163250 || || || |||||||| || ||||| || ||| ||||||||||||| ||||||||| Sbjct 431 TATCGTAGCCGCTCATGGTTATTTTGGCCGATTGGTCTTCCAGTATGCTAGTTTCAACAA 372 Query 163251 CTCACGTTC 163259 ||| ||||| Sbjct 371 CTCTCGTTC 363 >seq10884 Length=5042 Score = 129 bits (142), Expect = 6e-25 Identities = 118/149 (79%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 162952 TTCTCTGACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAA 163011 || ||||| | |||||||| || |||||||||||||| |||| |||| | || ||||| Sbjct 3789 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 3848 Query 163012 GCAGAGCACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGT 163071 || ||||||||||| || |||||||| || || ||| | || || || ||||||||||| Sbjct 3849 GCTGAGCACAACATTCTTATGCACCCATTTCACATGCTAGGCGTAGCTGGTGTATTCGGC 3908 Query 163072 GGTTCACTCTTTAGTGCTATGCACGGTTC 163100 || || || || | |||||| || ||||| Sbjct 3909 GGCTCCCTATTCATTGCTATACATGGTTC 3937 >seq8631 Length=609 Score = 125 bits (138), Expect = 8e-24 Identities = 117/146 (80%), Gaps = 2/146 (1%) Strand=Plus/Minus Query 162964 ATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCACAAC 163023 |||||||| || |||||||||||||| |||| |||| | || ||||| || ||||||||| Sbjct 323 ATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCCGAGCACAAC 264 Query 163024 ATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACT-CTT 163082 || || |||||||| || || ||| | | || || ||||||||||| || || || || Sbjct 263 ATTCTTATGCACCCATTTCACATGCTAGACGTAGCTGGTGTATTCGGCGGCTCCCTAATT 204 Query 163083 TAGTGCTATGCACGGTTCTCTTGTTA 163108 ||||||||||| ||||| |||| || Sbjct 203 CAGTGCTATGCATGGTTC-CTTGGTA 179 >seq36621 Length=13842 Score = 116 bits (128), Expect = 4e-21 Identities = 217/314 (69%), Gaps = 11/314 (4%) Strand=Plus/Minus Query 163177 GAAGAGACTTACAACATTGTTGCTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTAT 163236 ||||| ||||| || || || ||||||||| || ||||| | ||||||||| | ||| Sbjct 7968 GAAGAAACTTATAATATCGTATATGCTCATGGTTA-TTTGGCTGATTGATCTTCTAATAT 7910 Query 163237 GCATCTTTCAACAACTCACGTTCACTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGC 163296 || ||||||| |||| | || | | || || || ||||| | ||||| | | Sbjct 7909 GCTAGTTTCAACGACTCTCATTTTATATATTTTTTTCTAGCTGCTTGGCCTGTTTTTGGT 7850 Query 163297 ATCTGGTTCACTGCAATGGGTGTGTCAACTATGGCATTCAACCTTAACGGTTTCAACTTC 163356 || ||||||||||| ||||| | |||||| |||||||| || |||| || Sbjct 7849 ATATGGTTCACTGCGTTGGGTACTAGCATTATGGCTTTCAACCTAAATGGTTGAAATCGA 7790 Query 163357 AACCAATCCGTCGTTGA----CGCAGGTG-GTAAAGTGATTCCTACTTGGGCAGATATCC 163411 ||||||| || ||||| | ||| | |||| ||| |||||| | |||||| Sbjct 7789 AACCAATTGGTAGTTGATAGTCACAGCCGTGTAA--TGA---ATACTTGAGGTGATATCA 7735 Query 163412 TTAACAGAGCAGGACTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCAC 163471 |||| || |||| |||| | |||||||| || ||||||||||| || | ||| | Sbjct 7734 GTAACCATGCTAACCTTGTTATGAATGTTATGCATGAACGTAATGCTCATAATTCCCCTC 7675 Query 163472 TTGACCTTGCTGCT 163485 | ||| | |||||| Sbjct 7674 TAGACTTGGCTGCT 7661 >seq254652 Length=6058 Score = 98.7 bits (108), Expect = 1e-15 Identities = 193/284 (68%), Gaps = 1/284 (0%) Strand=Plus/Plus Query 162617 CTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCACTTCTCTATGGTAACA 162676 ||||| ||||| |||||||| |||||| || || || || ||||| |||| Sbjct 661 CTCCAAAAGATATTGATGGTATTCATGAACCTATTTTTACATCTCTACTTTATGGAAACA 720 Query 162677 ACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGTCTTCACTTCTATCCTA 162736 | || || || |||| ||| |||||| ||| | |||| ||| | || || || | | Sbjct 721 ATATTATTTCAGGTGTTGTTATTCCTACTTCTACAGCTACAGGTTTGCATTTTTACCTAA 780 Query 162737 TCTGGGAAGCAGCAACTCTTGATGAGTGGTTG-TATAATGGTGGACCTTTCCAACTTGTA 162795 | | ||||||| || | ||||||| ||||| || |||||||| |||| |||| | Sbjct 781 TATAGGAAGCAACATTTGTTGATGAATGGTTTATACAATGGTGGTCCTTATGAACTAATT 840 Query 162796 GTCTTCCACTTCCTTATCGGAATCACAGCATACTGTGGTCGTCAGTGGGAACTTTCTTAC 162855 || | |||||| | | || | | ||| ||||| ||||||||||| || | Sbjct 841 GTACTACACTTCTTACTTGGTGTAGCGTGTTACATGGGTCGCGAGTGGGAACTTAGTTTC 900 Query 162856 CGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCACC 162899 || | ||| |||| |||| ||| ||||||||| || || || Sbjct 901 CGTCTGGGTGTGCGACCTTTGATTGTTGTTGCATATTCAGCTCC 944 >seq92275 Length=5108 Score = 96.9 bits (106), Expect = 4e-15 Identities = 122/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 162540 CGGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCAT 162599 ||| ||||| ||||| |||||||||||| | | | | ||| | || || || || Sbjct 4789 CGGATGGTTTGGTGTTTTGATGATCCCTACCCTATTGACCGCAACTTCTGTATTTATTAT 4730 Query 162600 TGCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTC 162659 ||| ||||||| || |||||||| ||||| |||||||| | ||||||||| | || || Sbjct 4729 TGCCTTCATTGATGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATC 4670 Query 162660 ACTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTC 162707 || || || | || || || ||||| ||||| | |||||| ||| Sbjct 4669 TCTACTTTACGAAAATAATATTATCTCGGGTGCCATTATTCCTACTTC 4622 >seq264332 Length=996 Score = 95.1 bits (104), Expect = 1e-14 Identities = 79/97 (81%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 163214 TTGGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTCACGTTCACTTCACTTCTTCC 163273 |||| || ||||||||||| ||||| |||||||||||| ||||| | || ||||||| Sbjct 274 TTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCC 215 Query 163274 TTGCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGC 163310 | ||||| | ||||| || |||||||||||||||| Sbjct 214 TAGCTGCTTGGCCTGTAGTAGGCATCTGGTTCACTGC 178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 549877558034640