Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_019444.1 Length=176043 Score E Sequences producing significant alignments: (Bits) Value seq107965 262 4e-65 seq250312 141 1e-28 seq300680 134 2e-26 seq58055 120 3e-22 seq10884 111 2e-19 seq33322 105 7e-18 seq8631 100 3e-16 seq455967 95.1 1e-14 seq293234 91.5 2e-13 seq36621 89.7 6e-13 seq292072 87.8 2e-12 >seq107965 Length=6474 Score = 262 bits (290), Expect = 4e-65 Identities = 409/585 (70%), Gaps = 0/585 (0%) Strand=Plus/Plus Query 163060 TATGGCAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCAC 163119 ||||| ||||| || || | ||| | || |||| ||| || || ||| | || Sbjct 5876 TATGGAAACAATATTATTTTAGGTACCATTATTCCTATTTCTGCAGCTATAGGTTTGCAT 5935 Query 163120 TTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTC 163179 || || || || |||||||| |||| ||||||| ||| | || || |||||||||| Sbjct 5936 TTTTACCCAATATGGGAAGCAACATCTGTTGATGAATGGTTATACAATGGTGGTCCTTAT 5995 Query 163180 CAACTCGTAGTCTTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAATGGGAA 163239 |||| | || | |||||| | | || | | || ||||| ||||| |||||| Sbjct 5996 GAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAA 6055 Query 163240 CTTTCATATCGCTTAGGTATGCGCCCCTGGATCTGTGTAGCATACTCTGCACCTGTTGCA 163299 ||| | ||| | |||||||| | ||||| ||| ||||| || || ||||||||| Sbjct 6056 CTTAGTTTTCGTCTGGGTATGCGAACTTGGATGGTTGTTGCATATTCAGCTCCTGTTGCA 6115 Query 163300 GCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATG 163359 || || | || ||| || |||| || | |||||||| || ||||| | ||| Sbjct 6116 GCTGCGAGTGTTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATG 6175 Query 163360 CCACTTGGCATCTCTGGCACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATC 163419 || || || || ||||| || ||||||| |||| |||| ||||| || ||||||||||| Sbjct 6176 CCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATT 6235 Query 163420 CTGATGCACCCCTTCCATATGTTGGGAGTCGCTGGTGTCTTCGGTGGATCACTCTTCTCG 163479 || |||||||| || || ||| | || || |||||||| |||| || || || ||| Sbjct 6236 CTTATGCACCCATTTCACATGCTAGGTGTAGCTGGTGTAATCGGCGGCTCCCTATTCAGT 6295 Query 163480 GCAATGCATGGCAGTCTTGTTACCTCTTCACTCGTCCGTGAGACGACTGAAACTGAGTCA 163539 || |||||||| | || ||||||| | || | || || || |||| | | || Sbjct 6296 GCTATGCATGGTTCCTTGGTAACCTCTTGTTTGATCAGGGAAACCACAGAAAATAAATCT 6355 Query 163540 CAAAACTATGGTTACAAGTTTGGTCAAGAAGAAGAGACATACAACATCGTTGCAGCACAT 163599 || | ||||||| ||||||| |||||| || || || || ||||| || | ||| Sbjct 6356 GCTAATGAAGGTTACAGATTTGGTCTAGAAGATGAAACTTATAATATCGTAGCCGTTCAT 6415 Query 163600 GGCTACTTCGGTCGTTTGATCTTCCAATATGCATCATTCAACAAC 163644 || || || || || ||||||||||||||||| ||||||||| Sbjct 6416 GGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAAC 6460 >seq250312 Length=8481 Score = 141 bits (156), Expect = 1e-28 Identities = 307/461 (67%), Gaps = 9/461 (2%) Strand=Plus/Plus Query 163408 GAGCACAACATCCTGATGCACCCCTTCCATATGTTGGGAGTCGCTGGTGTCTTCGGTGGA 163467 ||||||||||| || | |||| | || || ||| | || || |||||||| | || | Sbjct 1574 GAGCACAACATTCTTAGGCACTCATTTCACATGCTAGGCGTAGCTGGTGTAATTGGCAGC 1633 Query 163468 TCACTCTTCTCGGCAATGCATGGCAGTCTTGTTACCTCTTCACTCGTCCGTGAGACGACT 163527 || || ||| || |||| ||| | || ||| || | || | || || || Sbjct 1634 TCCCTATTCAGTGCTATGCGTGGTTCCTTGGTAACCCCTAGTTTGATCAGGGAAACCACA 1693 Query 163528 GAAACTGAGTCACAAAACTATGGTTACAAGTTTGGTCAAGAAGAAGAGACATACAACATC 163587 | | ||| | | || | ||||| | || |||||||||| ||| | || || || Sbjct 1694 AAGAATGAATAAGCTAATGAAGGTTATATATTCGGTCAAGAAGGAGAAAATTAGAATATT 1753 Query 163588 GTTGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCATTCAACAACAGC 163647 || || || ||||| || || ||||| |||||||||| | |||| ||||||||| Sbjct 1754 GTAGCCGCTCATGGTTATTTTGGTCGATTGATCTTCCGACATGCTAGTTTCAACAACTCA 1813 Query 163648 AGAAGTCTTCACTTCTTCCTGGCAGCATGGCCTGTCGTCGGAATCTGGTTTACTGCACTG 163707 | | | || |||||||| || | |||||| |||||||||| || | Sbjct 1814 CGTTTTTTACATTTCTTCCTAGCTACTTGGCCT---------ATCTGGTTTATTGTGTTA 1864 Query 163708 GGCGTAAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGAT 163767 || | ||||| ||||| | |||||| || ||||| | ||| | || || | | || Sbjct 1865 GGTATCAGCACTATGGCTTACAACCTAAATGGTTTTAGTTTCCATCAATCTGTAGTCGAC 1924 Query 163768 GGTCAGGGTCGTGTGCTCAACACTTGGGCAGACGTGCTTAACCGCGCTGGTCTGGGTATG 163827 |||| ||| ||| | || |||||||| || | ||||| | ||| || |||||| Sbjct 1925 AGTCAATGTCATGTAATTAATACTTGGGCTGATATCATTAACTGTGCTAACCTTGGTATG 1984 Query 163828 GAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGA 163868 ||||||||| |||| |||| || || || ||||| || || Sbjct 1985 GAAGTTATGTATGAATGTAATGCTCATAATTTCCCTCTAGA 2025 >seq300680 Length=3790 Score = 134 bits (148), Expect = 2e-26 Identities = 212/301 (70%), Gaps = 2/301 (1%) Strand=Plus/Minus Query 163345 TTCTCTGACGCAATGCCACTTGGCATCTCTGGCACATTCAACTACATGCTTGTCTTCCAA 163404 || ||||| | ||||| || || || ||||| || ||||||| |||| |||| ||||| Sbjct 670 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 611 Query 163405 GCAGAGCACAACATCCTGATGCACCCCTTCCATATGTTGGGAGTCGCTGGTGTCTTCGGT 163464 | ||||||||||| || |||||||| || || ||| | | || |||||||| ||| Sbjct 610 GTTGAGCACAACATTCTTATGCACCCATTTCACATGCTAAGCGTAGCTGGTGTACTCGTC 551 Query 163465 GGATCACTCTTCTCGGCAATGCATGGCAGTCTTGTTACCTCTTCACTCGTCCGTGAGACG 163524 | || || || || |||||||| | || |||||| | || | || || Sbjct 550 AGCTCCCTATTTAATGCTATGCATGGTTCCTTGGTAACCTCTAGTTTAATCAG-GAAACC 492 Query 163525 ACTGAAACTGAGTCACAAAACTATGGTTACAAGTTTGGTCAAGAAGAAG-AGACATACAA 163583 | |||| ||| | || | |||||||| || ||||||||||||| | || || || Sbjct 491 AGAGAAAATGAATTTGCTAATGAAGGTTACAAATTCGGTCAAGAAGAAGAAAACTTATAA 432 Query 163584 CATCGTTGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCATTCAACAA 163643 ||||| || || ||||| || || || || ||| ||||||| ||||| |||||||| Sbjct 431 TATCGTAGCCGCTCATGGTTATTTTGGCCGATTGGTCTTCCAGTATGCTAGTTTCAACAA 372 Query 163644 C 163644 | Sbjct 371 C 371 >seq58055 Length=1185 Score = 120 bits (132), Expect = 3e-22 Identities = 135/181 (75%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 165145 ACCCCTTCCATATGATGGGTGTTGCAGGTATCTTGGGAGGAGCATTGCTATCTGCTATTC 165204 |||| || ||||||||||| ||||| ||| | ||||| | || ||||||| ||||||| Sbjct 1 ACCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGTGCTGCTTTGCTATGCGCTATTC 60 Query 165205 ATGGAGTCACAGTTGAAAATACATTATACGAGGATGGAGAGCAGGCAAATACCTTTAAGG 165264 ||| | || || |||||||| |||| || ||||| || |||||||| || | Sbjct 61 ATGATGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGCGCAAATACATTCTGTG 120 Query 165265 CGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGT 165324 | ||| | | || || | ||||| |||||||| ||||||||||| || ||||| |||| Sbjct 121 CTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAATCGCTTTTGGT 180 Query 165325 C 165325 | Sbjct 181 C 181 >seq10884 Length=5042 Score = 111 bits (122), Expect = 2e-19 Identities = 112/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 163345 TTCTCTGACGCAATGCCACTTGGCATCTCTGGCACATTCAACTACATGCTTGTCTTCCAA 163404 || ||||| | ||||| || || || ||||| || ||||||| |||| |||| ||||| Sbjct 3789 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 3848 Query 163405 GCAGAGCACAACATCCTGATGCACCCCTTCCATATGTTGGGAGTCGCTGGTGTCTTCGGT 163464 || ||||||||||| || |||||||| || || ||| | || || |||||||| ||||| Sbjct 3849 GCTGAGCACAACATTCTTATGCACCCATTTCACATGCTAGGCGTAGCTGGTGTATTCGGC 3908 Query 163465 GGATCACTCTTCTCGGCAATGCATGG 163490 || || || ||| || || ||||| Sbjct 3909 GGCTCCCTATTCATTGCTATACATGG 3934 >seq33322 Length=15627 Score = 105 bits (116), Expect = 7e-18 Identities = 106/138 (77%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 165090 GCAGCAATCTTTAGATTCCTGTTGTTCCTTCAAGGATTCCACAACTGGACCCTCAACCCC 165149 ||||| || ||| |||| | | || |||||||||| || |||||||| | ||||| Sbjct 6657 GCAGCTATATTTCGATTTATCCTCTTTTTTCAAGGATTTCATAACTGGACATTGAACCCA 6716 Query 165150 TTCCATATGATGGGTGTTGCAGGTATCTTGGGAGGAGCATTGCTATCTGCTATTCATGGA 165209 || ||||||||||| ||||| ||| | ||||| | || ||||||| ||||||||||| Sbjct 6717 TTTCATATGATGGGAGTTGCCGGTGTATTGGGTGCTGCTTTGCTATGCGCTATTCATGGT 6776 Query 165210 GTCACAGTTGAAAATACA 165227 | || || ||||||||| Sbjct 6777 GCTACCGTAGAAAATACA 6794 >seq8631 Length=609 Score = 100 bits (110), Expect = 3e-16 Identities = 104/135 (77%), Gaps = 1/135 (1%) Strand=Plus/Minus Query 163357 ATGCCACTTGGCATCTCTGGCACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAAC 163416 ||||| || || || ||||| || ||||||| |||| |||| ||||| || ||||||||| Sbjct 323 ATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCCGAGCACAAC 264 Query 163417 ATCCTGATGCACCCCTTCCATATGTTGGGAGTCGCTGGTGTCTTCGGTGGATCACT-CTT 163475 || || |||||||| || || ||| | | || |||||||| ||||| || || || || Sbjct 263 ATTCTTATGCACCCATTTCACATGCTAGACGTAGCTGGTGTATTCGGCGGCTCCCTAATT 204 Query 163476 CTCGGCAATGCATGG 163490 | || |||||||| Sbjct 203 CAGTGCTATGCATGG 189 >seq455967 Length=1404 Score = 95.1 bits (104), Expect = 1e-14 Identities = 137/190 (72%), Gaps = 5/190 (3%) Strand=Plus/Plus Query 165439 ACCTTCGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCAGAATTTG 165498 |||| ||||| || || ||||| ||| | |||| || | ||||||| ||||||| Sbjct 888 ACCTACGTGCCTATGACTTCGTTTCCCAGTAAATCAC-GCGACTAAAGATCCTGAATTTG 946 Query 165499 AGACCTTCTACACCAAAAACATCCTATTGAATGAAGGACTACGTGCTTG---GTTGGCAC 165555 |||| |||||||||||||| || || || || ||||| | ||| |||| | |||| | Sbjct 947 AGACTTTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTTCTTGGATGATGGCTC 1006 Query 165556 CTGCT-GATCAACCCCATGAAAACTTTATCTTCCCAGAAGAAGTATTGCCTAGAGGCAAC 165614 | | ||||| | ||||||||| |||| ||| | || || || | || | || ||| Sbjct 1007 AAGATCGATCAGCATCATGAAAACCTTATATTCTCTGAGGAGGTTCTACCACGTGGAAAC 1066 Query 165615 GCCCTTTAAT 165624 || ||||||| Sbjct 1067 GCTCTTTAAT 1076 >seq293234 Length=8108 Score = 91.5 bits (100), Expect = 2e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 165488 TCCAGAATTTGAGACCTTCTACACCAAAAACATCCTATTGAATGAAGGACTACGTGCTTG 165547 ||| ||||||||||| |||||||||||||| || | || || ||||| | ||||||| Sbjct 6889 TCCCGAATTTGAGACTTTCTACACCAAAAATATTTTCTTAAACGAAGGTATTCGTGCTTA 6948 Query 165548 GTTGGCACCTGCTGATCAACCCCATGAAAACTTTATCTTCCCAGAAGAAGTATTGCCTAG 165607 | ||||| || ||||| || |||||||| || | ||||| || || || | || | Sbjct 6949 GATGGCAGCTCAAGATCAGCCTCATGAAAAGCTTGTATTCCCTGAGGAGGTTCTACCCCG 7008 Query 165608 AGGCAACGCCCTTTA 165622 || ||||| ||||| Sbjct 7009 TGGAAACGCTCTTTA 7023 >seq36621 Length=13842 Score = 89.7 bits (98), Expect = 6e-13 Identities = 206/309 (67%), Gaps = 1/309 (0%) Strand=Plus/Minus Query 163570 GAAGAGACATACAACATCGTTGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATAT 163629 ||||| || || || ||||| || ||||| || || | | | ||||||||| ||||| Sbjct 7968 GAAGAAACTTATAATATCGTATATGCTCATGGTTATTTGGCT-GATTGATCTTCTAATAT 7910 Query 163630 GCATCATTCAACAACAGCAGAAGTCTTCACTTCTTCCTGGCAGCATGGCCTGTCGTCGGA 163689 || |||||| || | | | || || || || || |||||||| | || Sbjct 7909 GCTAGTTTCAACGACTCTCATTTTATATATTTTTTTCTAGCTGCTTGGCCTGTTTTTGGT 7850 Query 163690 ATCTGGTTTACTGCACTGGGCGTAAGCACCATGGCATTCAACCTCAACGGTTTCAACTTC 163749 || ||||| ||||| |||| |||| ||||| |||||||| || |||| || Sbjct 7849 ATATGGTTCACTGCGTTGGGTACTAGCATTATGGCTTTCAACCTAAATGGTTGAAATCGA 7790 Query 163750 AACCAGTCCATCCTTGATGGTCAGGGTCGTGTGCTCAACACTTGGGCAGACGTGCTTAAC 163809 ||||| | | ||||| |||| | ||||| | || ||||| | || | |||| Sbjct 7789 AACCAATTGGTAGTTGATAGTCACAGCCGTGTAATGAATACTTGAGGTGATATCAGTAAC 7730 Query 163810 CGCGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGAT 163869 | ||| || | |||| | ||||||||||| ||||| || || || | ||| || || Sbjct 7729 CATGCTAACCTTGTTATGAATGTTATGCATGAACGTAATGCTCATAATTCCCCTCTAGAC 7670 Query 163870 CTTGCTGCT 163878 | |||||| Sbjct 7669 TTGGCTGCT 7661 >seq292072 Length=5858 Score = 87.8 bits (96), Expect = 2e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 165285 GAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGCATTGCG 165344 ||||| |||||||| ||||||||||| || ||||| ||||| || ||||| || |||| Sbjct 1533 GAAGAAACTTATTCAATGGTCACTGCTAATCGCTTTTGGTCCCAAATCTTTGGGGTTGCC 1474 Query 165345 TTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGT 165385 |||| || || || ||| | ||||| || ||||| ||||| Sbjct 1473 TTTTTCAATAAACGTTGGTTACATTTCTTTATGTTATTTGT 1433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559943646091280