Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq293582 214 3e-50 seq294625 116 7e-21 >seq293582 Length=2029 Score = 214 bits (236), Expect = 3e-50 Identities = 572/862 (66%), Gaps = 38/862 (4%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| ||||| || || ||||| |||||||| |||||||||| |||||| || ||| Sbjct 1008 CTGGTACTCCCCAACCCTCTTCTCGAAGAAGTTCGTCTTCCCCTGCAACGAAATCAGCTC 1067 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACA----CCCGTGTCAGGCCCATCTGTTCCA 47954 ||| | || || || | || |||| ||||| | ||| | ||| Sbjct 1068 CATCCAATCAAACGGATTCTGCACCTTGTACATCTTCCCGTACC----CCAACGCCACCA 1123 Query 47955 GCAGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGA 48014 || ||||||| ||| ||||||| || | ||| || | |||||| || | | Sbjct 1124 ACAACCGATCCGCCACGAACTCGATATACGTGCTCATCAGATCGCCGTTCATCCCCACCA 1183 Query 48015 GGG-ACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACA 48073 | |||||| || || | | ||||||| |||| |||| ||| || ||| ||||| Sbjct 1184 GACCACACGG-CAGCGCGTCGCACACAAACTCCCTCTCGATCTCCACCGCGTCCGCCACA 1242 Query 48074 ATCTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAG 48133 |||| |||||| || ||| | || || || | | |||| || ||| Sbjct 1243 ATCTTCTTAACCCGCTCCTCGCTCAGCTTCATGTTCAA---CAAACCGTAGATCAAGCAC 1299 Query 48134 GCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCA 48193 || || || | ||||| ||||||||||| ||| | |||||||||| || || Sbjct 1300 GCGAAATCGCAGTGCAGGCCTTCGTCCCTCGAGATCAATTCGTTGGAGAACGTTAGGCCC 1359 Query 48194 GGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATG 48253 ||||| | || | || ||||||||||| || || ||| || |||||||||||| Sbjct 1360 GGCATCAGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGCTTCCGGAGAAGAAGATG 1419 Query 48254 CCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATC 48313 ||||| || ||||| ||| || || ||| |||| || || | ||| |||| Sbjct 1420 CCCTCGACACAGGCGAAGGCGACGATCCGCTCCGCGAAGGACTCGGACCCGTC---GATC 1476 Query 48314 CAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAG 48373 ||| || ||||| | |||||| || |||||| || || ||||| | ||| |||| Sbjct 1477 CAGCGGAGGGCCCACTGGGCCTTCCGCTGGATGCAGGGGATGGTCTCCACGGCGTGGAAC 1536 Query 48374 AGC---TTCTTGCACTCACCTGCGTCCGCAACATAGGT----AGTGAGCAGCTTTGCGTA 48426 ||| ||||| ||| | |||| | |||| || ||| || | ||| Sbjct 1537 AGCCGGTTCTT---CTCGTTGGAGTCCTTGATGTAGGACTCCAG-GAGGAGGCT---GTA 1589 Query 48427 CATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAA 48486 |||||| ||||| | ||||| || ||||||||||||||||||||||| | ||||| Sbjct 1590 CATCTCCGAGTGGATGTTCTCGATGGCGATCTGGAACCCGTAGAAGGCGCGCGCCTCCGC 1649 Query 48487 CACCTGCACTTCTGTGGAGAATCTCTCCAGC-AGATTCTCATTGACTATCCCATCTGAAG 48545 ||||| || || | ||| | ||| || |||||||| ||| || || || || | Sbjct 1650 GACCTGGACCTCCTTCATGAAGC-GTCCGGCAAGATTCTCCAGGACGATGCCGTCCGAGG 1708 Query 48546 CAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCC 48605 | ||||||||||| ||||| || | | ||| ||||||||| || ||| | | | || Sbjct 1709 CGGCAAAGAAGGCGAGGACGTGGGTGATGAAGTGGCGCTCGCCGTCGGTCAACGACTCCC 1768 Query 48606 A---GCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTG 48662 | || ||| ||| | ||||| |||||||| | ||||| || || || | Sbjct 1769 ATTGGCGCTG---GTCCTGCGATAGGTCGACTTCTTCAGCCGTCCAAAACGAGGCTTCGG 1825 Query 48663 CTTTTTTGTACATGCCCCATAT 48684 ||||||||||||| |||| || Sbjct 1826 CTTTTTTGTACATTTCCCAGAT 1847 >seq294625 Length=4757 Score = 116 bits (128), Expect = 7e-21 Identities = 366/564 (65%), Gaps = 5/564 (1%) Strand=Plus/Plus Query 48122 TAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAG 48181 ||||||| |||||| || || | ||| || |||||||| || || | | |||||||| Sbjct 4072 TAGAGCAAGCAGGCGAAATCGCAGTGTAATCCTTCGTCTCGTGAAATCAACTCGTTGGAG 4131 Query 48182 AAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCA 48241 ||| | |||||||| | || | | || | |||||| || || ||| || Sbjct 4132 AAGGTCAATCCAGGCATCAAACCGCGTTTCTTCAACCAGAAGATAGCGCAGAAGCTTCCC 4191 Query 48242 GAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTC 48301 |||||||| || || || || ||||| || ||| | || | || || | | Sbjct 4192 GAGAAGAATATCCCTTCGACGCAAGCGAAGGCAATGATACGTTCCGCAAACGACTC---C 4248 Query 48302 TTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCT 48361 | | |||||| | |||||| | |||||||||| || ||| || || ||||| Sbjct 4249 GAGCCATCGATCCACCTCATCGCCCAATTGGCCTTCTTCTGGACGCAAGGAATGGTCTCC 4308 Query 48362 ATGGCCCGGAAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTT 48421 | || || || ||| || | || | |||| | ||||| ||| ||| Sbjct 4309 ACAGCGCGAAACAGCCTCATCTTGTCGTTGGAGTCCTTGATGTAGGTCTCGAGGAGCAAG 4368 Query 48422 GCGTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCC 48481 ||||||||| ||||| | ||||| || ||||||||||| |||||||| || | ||| Sbjct 4369 CTGTACATCTCGGAGTGAATGTTCTCGATTGCGATCTGGAATCCGTAGAAAGCACGAGCC 4428 Query 48482 TCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGC-AGATTCTCATTGACTATCCCATC 48540 || || || || ||| | ||| || ||| || || || || || || || || Sbjct 4429 TCGGCGACTTGAACCTCTTTCATGAACCT-TCCGGCTAGGTTTTCCAATACGATTCCGTC 4487 Query 48541 TGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGC 48600 || || || |||||||| ||||| || | | ||| || || ||| || |||||| | Sbjct 4488 GGAGGCGGCGAAGAAGGCGAGGACGTGAGTGATGAAGTGTCGTTCGCCGTCGGTGAGGGA 4547 Query 48601 ATTCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAG 48660 | |||| || ||| | || || || || || | ||||||||||| || Sbjct 4548 GTCCCAGTGGCGTTGGTCCTGTGACAAATCGACCTCCTCGGCGGTCCAGAAGGAGGCTTC 4607 Query 48661 TGCTTTTTTGTACATGCCCCATAT 48684 || || |||||||| |||| || Sbjct 4608 GGCCTTCTTGTACATTTCCCAAAT 4631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 926131004311040