Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27]
463,906 sequences; 661,937,708 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq293582 214 3e-50
seq294625 116 7e-21
>seq293582
Length=2029
Score = 214 bits (236), Expect = 3e-50
Identities = 572/862 (66%), Gaps = 38/862 (4%)
Strand=Plus/Plus
Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898
|||||| ||||| || || ||||| |||||||| |||||||||| |||||| || |||
Sbjct 1008 CTGGTACTCCCCAACCCTCTTCTCGAAGAAGTTCGTCTTCCCCTGCAACGAAATCAGCTC 1067
Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACA----CCCGTGTCAGGCCCATCTGTTCCA 47954
||| | || || || | || |||| ||||| | ||| | |||
Sbjct 1068 CATCCAATCAAACGGATTCTGCACCTTGTACATCTTCCCGTACC----CCAACGCCACCA 1123
Query 47955 GCAGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGA 48014
|| ||||||| ||| ||||||| || | ||| || | |||||| || | |
Sbjct 1124 ACAACCGATCCGCCACGAACTCGATATACGTGCTCATCAGATCGCCGTTCATCCCCACCA 1183
Query 48015 GGG-ACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACA 48073
| |||||| || || | | ||||||| |||| |||| ||| || ||| |||||
Sbjct 1184 GACCACACGG-CAGCGCGTCGCACACAAACTCCCTCTCGATCTCCACCGCGTCCGCCACA 1242
Query 48074 ATCTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAG 48133
|||| |||||| || ||| | || || || | | |||| || |||
Sbjct 1243 ATCTTCTTAACCCGCTCCTCGCTCAGCTTCATGTTCAA---CAAACCGTAGATCAAGCAC 1299
Query 48134 GCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCA 48193
|| || || | ||||| ||||||||||| ||| | |||||||||| || ||
Sbjct 1300 GCGAAATCGCAGTGCAGGCCTTCGTCCCTCGAGATCAATTCGTTGGAGAACGTTAGGCCC 1359
Query 48194 GGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATG 48253
||||| | || | || ||||||||||| || || ||| || ||||||||||||
Sbjct 1360 GGCATCAGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGCTTCCGGAGAAGAAGATG 1419
Query 48254 CCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATC 48313
||||| || ||||| ||| || || ||| |||| || || | ||| ||||
Sbjct 1420 CCCTCGACACAGGCGAAGGCGACGATCCGCTCCGCGAAGGACTCGGACCCGTC---GATC 1476
Query 48314 CAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAG 48373
||| || ||||| | |||||| || |||||| || || ||||| | ||| ||||
Sbjct 1477 CAGCGGAGGGCCCACTGGGCCTTCCGCTGGATGCAGGGGATGGTCTCCACGGCGTGGAAC 1536
Query 48374 AGC---TTCTTGCACTCACCTGCGTCCGCAACATAGGT----AGTGAGCAGCTTTGCGTA 48426
||| ||||| ||| | |||| | |||| || ||| || | |||
Sbjct 1537 AGCCGGTTCTT---CTCGTTGGAGTCCTTGATGTAGGACTCCAG-GAGGAGGCT---GTA 1589
Query 48427 CATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAA 48486
|||||| ||||| | ||||| || ||||||||||||||||||||||| | |||||
Sbjct 1590 CATCTCCGAGTGGATGTTCTCGATGGCGATCTGGAACCCGTAGAAGGCGCGCGCCTCCGC 1649
Query 48487 CACCTGCACTTCTGTGGAGAATCTCTCCAGC-AGATTCTCATTGACTATCCCATCTGAAG 48545
||||| || || | ||| | ||| || |||||||| ||| || || || || |
Sbjct 1650 GACCTGGACCTCCTTCATGAAGC-GTCCGGCAAGATTCTCCAGGACGATGCCGTCCGAGG 1708
Query 48546 CAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCC 48605
| ||||||||||| ||||| || | | ||| ||||||||| || ||| | | | ||
Sbjct 1709 CGGCAAAGAAGGCGAGGACGTGGGTGATGAAGTGGCGCTCGCCGTCGGTCAACGACTCCC 1768
Query 48606 A---GCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTG 48662
| || ||| ||| | ||||| |||||||| | ||||| || || || |
Sbjct 1769 ATTGGCGCTG---GTCCTGCGATAGGTCGACTTCTTCAGCCGTCCAAAACGAGGCTTCGG 1825
Query 48663 CTTTTTTGTACATGCCCCATAT 48684
||||||||||||| |||| ||
Sbjct 1826 CTTTTTTGTACATTTCCCAGAT 1847
>seq294625
Length=4757
Score = 116 bits (128), Expect = 7e-21
Identities = 366/564 (65%), Gaps = 5/564 (1%)
Strand=Plus/Plus
Query 48122 TAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAG 48181
||||||| |||||| || || | ||| || |||||||| || || | | ||||||||
Sbjct 4072 TAGAGCAAGCAGGCGAAATCGCAGTGTAATCCTTCGTCTCGTGAAATCAACTCGTTGGAG 4131
Query 48182 AAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCA 48241
||| | |||||||| | || | | || | |||||| || || ||| ||
Sbjct 4132 AAGGTCAATCCAGGCATCAAACCGCGTTTCTTCAACCAGAAGATAGCGCAGAAGCTTCCC 4191
Query 48242 GAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTC 48301
|||||||| || || || || ||||| || ||| | || | || || | |
Sbjct 4192 GAGAAGAATATCCCTTCGACGCAAGCGAAGGCAATGATACGTTCCGCAAACGACTC---C 4248
Query 48302 TTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCT 48361
| | |||||| | |||||| | |||||||||| || ||| || || |||||
Sbjct 4249 GAGCCATCGATCCACCTCATCGCCCAATTGGCCTTCTTCTGGACGCAAGGAATGGTCTCC 4308
Query 48362 ATGGCCCGGAAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTT 48421
| || || || ||| || | || | |||| | ||||| ||| |||
Sbjct 4309 ACAGCGCGAAACAGCCTCATCTTGTCGTTGGAGTCCTTGATGTAGGTCTCGAGGAGCAAG 4368
Query 48422 GCGTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCC 48481
||||||||| ||||| | ||||| || ||||||||||| |||||||| || | |||
Sbjct 4369 CTGTACATCTCGGAGTGAATGTTCTCGATTGCGATCTGGAATCCGTAGAAAGCACGAGCC 4428
Query 48482 TCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGC-AGATTCTCATTGACTATCCCATC 48540
|| || || || ||| | ||| || ||| || || || || || || || ||
Sbjct 4429 TCGGCGACTTGAACCTCTTTCATGAACCT-TCCGGCTAGGTTTTCCAATACGATTCCGTC 4487
Query 48541 TGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGC 48600
|| || || |||||||| ||||| || | | ||| || || ||| || |||||| |
Sbjct 4488 GGAGGCGGCGAAGAAGGCGAGGACGTGAGTGATGAAGTGTCGTTCGCCGTCGGTGAGGGA 4547
Query 48601 ATTCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAG 48660
| |||| || ||| | || || || || || | ||||||||||| ||
Sbjct 4548 GTCCCAGTGGCGTTGGTCCTGTGACAAATCGACCTCCTCGGCGGTCCAGAAGGAGGCTTC 4607
Query 48661 TGCTTTTTTGTACATGCCCCATAT 48684
|| || |||||||| |||| ||
Sbjct 4608 GGCCTTCTTGTACATTTCCCAAAT 4631
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 926131004311040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |