Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq293582 149 1e-30 seq294625 114 2e-20 >seq293582 Length=2029 Score = 149 bits (164), Expect = 1e-30 Identities = 376/566 (66%), Gaps = 7/566 (1%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||||| |||||||| || || || ||| ||||| || ||||| | || || Sbjct 1847 ATCTGGGAAATGTACAAAAAAGCCGAAGCCTCGTTTTGGACGGCTGAAGAAGTCGACCTA 1788 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGTAC 25596 | ||||| | | ||| | | | || | | ||||| || || ||| || Sbjct 1787 TCGCAGGACCAGCGCCAATGGGAGTCGTTGACCGACGGCGAGCGCCACTTCATCACCCAC 1728 Query 25597 GTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGA-GATT 25655 || | || |||||||| ||||| || || || || |||||||| ||| || | || Sbjct 1727 GTCCTCGCCTTCTTTGCCGCCTCGGACGGCATCGTCCTGGAGAATCT-TGCCGGACGCTT 1669 Query 25656 CACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGA 25715 || | ||| || ||| || |||||| |||||||| |||||||| |||||||| Sbjct 1668 CATGAAGGAGGTCCAGGTCGCGGAGGCGCGCGCCTTCTACGGGTTCCAGATCGCCATCGA 1609 Query 25716 AAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGCCGA 25775 || | ||||| ||| |||| | || ||| | | ||||| | ||| | ||| Sbjct 1608 GAACATCCACTCGGAGATGTACAGCCTCCTCCTGGAGTCCTACATCAAGGACTCCAACGA 1549 Query 25776 GAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGTG 25835 || | |||||||| ||| | ||| ||| ||| ||||| || ||||||| | ||| Sbjct 1548 GAAGAACCGGCTGTTCCACGCCGTGGAGACCATCCCCTGCATCCAGCGGAAGGCCCAGTG 1489 Query 25836 GGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTGC 25895 |||| | |||||| || | | || | || | |||||| | || ||||| || Sbjct 1488 GGCCCTCCGCTGGATCGACGG---GTCCGAGTCCTTCGCGGAGCGGATCGTCGCCTTCGC 1432 Query 25896 TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAAGCAGA 25954 ||| ||||||||||| ||| ||| || |||| ||||||||||||||||| || Sbjct 1431 CTGTGTCGAGGGCATCTTCTTCTCCGGAAGCTTCTGCG-CCATCTTCTGGCTCAAGAAGC 1373 Query 25955 AGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCC 26014 || ||||| || || || |||||||| | ||| |||||||| || || | Sbjct 1372 GCGGCCTGATGCCGGGCCTAACGTTCTCCAACGAATTGATCTCGAGGGACGAAGGCCTGC 1313 Query 26015 ACAGAGATTTTGCCTGCCTGCTCTAC 26040 || | ||||| || ||| || ||||| Sbjct 1312 ACTGCGATTTCGCGTGCTTGATCTAC 1287 >seq294625 Length=4757 Score = 114 bits (126), Expect = 2e-20 Identities = 372/568 (65%), Gaps = 11/568 (2%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||||| |||||||||||||| || ||| |||||||||||| ||| | ||| || Sbjct 4631 ATTTGGGAAATGTACAAGAAGGCCGAAGCCTCCTTCTGGACCGCCGAGGAGGTCGATTTG 4572 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGTAC 25596 | ||||| | |||| || | || || | | ||| | || || ||| || Sbjct 4571 TCACAGGACCAACGCCACTGGGACTCCCTCACCGACGGCGAACGACACTTCATCACTCAC 4512 Query 25597 GTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTC 25656 || | || ||||| || ||||| || || || || || || || || || ||| Sbjct 4511 GTCCTCGCCTTCTTCGCCGCCTCCGACGGAATCGTATTGGAAAACCTAGCCGGAAGGTTC 4452 Query 25657 ACCAGGGAAGTGCAGTACGTGGAGGCCAAGTG-TTTCTACGGTTTCCAGATGGCCATCGA 25715 | | || || || || |||| | ||| ||||||||| |||||||| || ||||| Sbjct 4451 ATGAAAGAGGTTCAAGTCGCCGAGG-CTCGTGCTTTCTACGGATTCCAGATCGCAATCGA 4393 Query 25716 AAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGCCGA 25775 || | ||||| ||| |||| | ||| || ||| ||||| | ||| | ||| Sbjct 4392 GAACATTCACTCCGAGATGTACAGCTTGCTCCTCGAGACCTACATCAAGGACTCCAACGA 4333 Query 25776 GAGAGAT-CGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGT 25834 | |||| |||||||| | || | ||| ||| || || || ||| |||||| | Sbjct 4332 CA-AGATGAGGCTGTTTCGCGCTGTGGAGACCATTCCTTGCGTCCAGAAGAAGGCCAATT 4274 Query 25835 GGGCCATGAAGTGGATCAACAGC-CAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTT 25893 |||| |||| ||||||| | || | ||| |||||| || || | | ||||| Sbjct 4273 GGGCGATGAGGTGGATCGATGGCTCGGAG----TCGTTTGCGGAACGTATCATTGCCTTC 4218 Query 25894 GCTGCTGTGGAGGGCATCTTTTTC-AGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCA 25952 ||| || || || || || ||| | | | | ||| || ||||||||| | ||| | Sbjct 4217 GCTTGCGTCGAAGGGATATTCTTCTCGGGAAGCTTCTGC-GCTATCTTCTGGTTGAAGAA 4159 Query 25953 GAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCT 26012 || ||||| || || ||| ||||||||| | || | ||||| || | Sbjct 4158 ACGCGGTTTGATGCCTGGATTGACCTTCTCCAACGAGTTGATTTCACGAGACGAAGGATT 4099 Query 26013 CCACAGAGATTTTGCCTGCCTGCTCTAC 26040 ||| | ||||| |||||| |||||||| Sbjct 4098 ACACTGCGATTTCGCCTGCTTGCTCTAC 4071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923458591552640