Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27]
463,906 sequences; 661,937,708 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq293582 149 1e-30
seq294625 114 2e-20
>seq293582
Length=2029
Score = 149 bits (164), Expect = 1e-30
Identities = 376/566 (66%), Gaps = 7/566 (1%)
Strand=Plus/Minus
Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536
|| ||||| |||||||| || || || ||| ||||| || ||||| | || ||
Sbjct 1847 ATCTGGGAAATGTACAAAAAAGCCGAAGCCTCGTTTTGGACGGCTGAAGAAGTCGACCTA 1788
Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGTAC 25596
| ||||| | | ||| | | | || | | ||||| || || ||| ||
Sbjct 1787 TCGCAGGACCAGCGCCAATGGGAGTCGTTGACCGACGGCGAGCGCCACTTCATCACCCAC 1728
Query 25597 GTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGA-GATT 25655
|| | || |||||||| ||||| || || || || |||||||| ||| || | ||
Sbjct 1727 GTCCTCGCCTTCTTTGCCGCCTCGGACGGCATCGTCCTGGAGAATCT-TGCCGGACGCTT 1669
Query 25656 CACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGA 25715
|| | ||| || ||| || |||||| |||||||| |||||||| ||||||||
Sbjct 1668 CATGAAGGAGGTCCAGGTCGCGGAGGCGCGCGCCTTCTACGGGTTCCAGATCGCCATCGA 1609
Query 25716 AAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGCCGA 25775
|| | ||||| ||| |||| | || ||| | | ||||| | ||| | |||
Sbjct 1608 GAACATCCACTCGGAGATGTACAGCCTCCTCCTGGAGTCCTACATCAAGGACTCCAACGA 1549
Query 25776 GAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGTG 25835
|| | |||||||| ||| | ||| ||| ||| ||||| || ||||||| | |||
Sbjct 1548 GAAGAACCGGCTGTTCCACGCCGTGGAGACCATCCCCTGCATCCAGCGGAAGGCCCAGTG 1489
Query 25836 GGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTGC 25895
|||| | |||||| || | | || | || | |||||| | || ||||| ||
Sbjct 1488 GGCCCTCCGCTGGATCGACGG---GTCCGAGTCCTTCGCGGAGCGGATCGTCGCCTTCGC 1432
Query 25896 TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAAGCAGA 25954
||| ||||||||||| ||| ||| || |||| ||||||||||||||||| ||
Sbjct 1431 CTGTGTCGAGGGCATCTTCTTCTCCGGAAGCTTCTGCG-CCATCTTCTGGCTCAAGAAGC 1373
Query 25955 AGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCC 26014
|| ||||| || || || |||||||| | ||| |||||||| || || |
Sbjct 1372 GCGGCCTGATGCCGGGCCTAACGTTCTCCAACGAATTGATCTCGAGGGACGAAGGCCTGC 1313
Query 26015 ACAGAGATTTTGCCTGCCTGCTCTAC 26040
|| | ||||| || ||| || |||||
Sbjct 1312 ACTGCGATTTCGCGTGCTTGATCTAC 1287
>seq294625
Length=4757
Score = 114 bits (126), Expect = 2e-20
Identities = 372/568 (65%), Gaps = 11/568 (2%)
Strand=Plus/Minus
Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536
|| ||||| |||||||||||||| || ||| |||||||||||| ||| | ||| ||
Sbjct 4631 ATTTGGGAAATGTACAAGAAGGCCGAAGCCTCCTTCTGGACCGCCGAGGAGGTCGATTTG 4572
Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGTAC 25596
| ||||| | |||| || | || || | | ||| | || || ||| ||
Sbjct 4571 TCACAGGACCAACGCCACTGGGACTCCCTCACCGACGGCGAACGACACTTCATCACTCAC 4512
Query 25597 GTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTC 25656
|| | || ||||| || ||||| || || || || || || || || || |||
Sbjct 4511 GTCCTCGCCTTCTTCGCCGCCTCCGACGGAATCGTATTGGAAAACCTAGCCGGAAGGTTC 4452
Query 25657 ACCAGGGAAGTGCAGTACGTGGAGGCCAAGTG-TTTCTACGGTTTCCAGATGGCCATCGA 25715
| | || || || || |||| | ||| ||||||||| |||||||| || |||||
Sbjct 4451 ATGAAAGAGGTTCAAGTCGCCGAGG-CTCGTGCTTTCTACGGATTCCAGATCGCAATCGA 4393
Query 25716 AAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGCCGA 25775
|| | ||||| ||| |||| | ||| || ||| ||||| | ||| | |||
Sbjct 4392 GAACATTCACTCCGAGATGTACAGCTTGCTCCTCGAGACCTACATCAAGGACTCCAACGA 4333
Query 25776 GAGAGAT-CGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGT 25834
| |||| |||||||| | || | ||| ||| || || || ||| |||||| |
Sbjct 4332 CA-AGATGAGGCTGTTTCGCGCTGTGGAGACCATTCCTTGCGTCCAGAAGAAGGCCAATT 4274
Query 25835 GGGCCATGAAGTGGATCAACAGC-CAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTT 25893
|||| |||| ||||||| | || | ||| |||||| || || | | |||||
Sbjct 4273 GGGCGATGAGGTGGATCGATGGCTCGGAG----TCGTTTGCGGAACGTATCATTGCCTTC 4218
Query 25894 GCTGCTGTGGAGGGCATCTTTTTC-AGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCA 25952
||| || || || || || ||| | | | | ||| || ||||||||| | ||| |
Sbjct 4217 GCTTGCGTCGAAGGGATATTCTTCTCGGGAAGCTTCTGC-GCTATCTTCTGGTTGAAGAA 4159
Query 25953 GAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCT 26012
|| ||||| || || ||| ||||||||| | || | ||||| || |
Sbjct 4158 ACGCGGTTTGATGCCTGGATTGACCTTCTCCAACGAGTTGATTTCACGAGACGAAGGATT 4099
Query 26013 CCACAGAGATTTTGCCTGCCTGCTCTAC 26040
||| | ||||| |||||| ||||||||
Sbjct 4098 ACACTGCGATTTCGCCTGCTTGCTCTAC 4071
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 923458591552640
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