Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq107965 288 3e-73 seq169634 251 2e-62 seq300680 149 2e-31 seq250312 134 4e-27 seq10884 120 9e-23 seq8631 114 4e-21 seq92275 104 7e-18 seq254652 102 2e-17 seq231965 80.6 8e-11 seq176507 80.6 8e-11 >seq107965 Length=6474 Score = 288 bits (318), Expect = 3e-73 Identities = 418/588 (71%), Gaps = 2/588 (0%) Strand=Plus/Minus Query 18066 TTGTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATA 18125 ||||| || |||||||| |||||||| | || ||||| || |||||| | || || ||| Sbjct 6459 TTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAACGGCTACGATA 6400 Query 18126 TTATACGTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTC 18185 ||||| || || |||||| | |||||| | || || | || ||| | | || || Sbjct 6399 TTATAAGTTTCATCTTCTAGACCAAATCTGTAACCTTCATTAGCAGATTTATTTTCTGTG 6340 Query 18186 GTTTCTCTAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCA 18245 ||||| || || | | || || || | || ||||||||| ||||| | || Sbjct 6339 GTTTCCCTGATCAAACAAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCG 6280 Query 18246 CCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCT 18305 |||| ||| || || ||||| ||||| || || || |||||||| || ||||| || || Sbjct 6279 CCGATTACACCAGCTACACCTAGCATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGCC 6220 Query 18306 TGGAATACGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAA 18365 |||||||| | |||||| ||||||||||| ||| || ||||||||||||||||| || Sbjct 6219 TGGAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAG 6160 Query 18366 CTCCCTTGTCCAAAAGGATA-AACGAGAAATACTGAGAAGGCAGCTGCTACTGGTGCGGA 18424 || ||||| |||| || || | | ||||| || |||||||| || || || || Sbjct 6159 CTTCCTTGACCAATTGGGTAGATCAAGAAA-ACAACACTCGCAGCTGCAACAGGAGCTGA 6101 Query 18425 ATAAGCAACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCC 18484 ||| |||||| ||||| | |||||||| || | | ||||||||||||| | || || Sbjct 6100 ATATGCAACAACCATCCAAGTTCGCATACCCAGACGAAAACTAAGTTCCCACTCACGACC 6041 Query 18485 CATGTAAGCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTT 18544 ||||||| || | || | | ||||| | ||||| |||| ||| || || || || Sbjct 6040 CATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCATT 5981 Query 18545 ATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGC 18604 |||||||| || || | | || |||||||| |||||||| || || | ||| || || Sbjct 5980 GTATAACCATTCATCAACAGATGTTGCTTCCCATATTGGGTAAAAATGCAAACCTATAGC 5921 Query 18605 GTTAGATGACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAG 18652 ||| || | || | ||| | || || ||||||||||| || Sbjct 5920 TGCAGAAATAGGAATAATGGTACCTAAAATAATATTGTTTCCATAAAG 5873 >seq169634 Length=720 Score = 251 bits (278), Expect = 2e-62 Identities = 335/461 (73%), Gaps = 6/461 (1%) Strand=Plus/Plus Query 18342 CCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGATAAA-CGAGAAATACTGA 18400 || ||||||||||||||||| || || ||||| |||| || || | | ||||| || | Sbjct 2 CCTAGAGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGGTAGATCAAGAAA-AC--A 58 Query 18401 GAAG--GCAGCTGCTACTGGTGCGGAATAAGCAACACAAATCCACGGGCGCATACCTAGT 18458 | || |||||||| || | || ||||| |||||| |||||| || |||||||| || Sbjct 59 GCAGTTGCAGCTGCAACAGAAGCTGAATATGCAACAACAATCCAAGGTCGCATACCCAGA 118 Query 18459 CTATAACTAAGTTCCCATTGTCGTCCCATGTAAGCTGCGATGCCGATGAGAAAGTGGAAC 18518 | ||||||||||||| | || ||||||||| || | || | | ||||| | Sbjct 119 CGGAAACTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGA 178 Query 18519 ACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAG 18578 ||||| |||| ||| || || || || |||||||| || || | || ||| |||||||| Sbjct 179 ACAATTAGTTCATAAGGACCACCATTGTATAACCATTCATCAACGGATGCTGCTTCCCAT 238 Query 18579 ATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGATATGATG 18638 |||||||| || || | ||| || || ||| | || | || | ||||| || || Sbjct 239 ATTGGGTAAAAATGCAAACCTATAGCTGCAGAAGTAGGAATAATGACACCTGAAATAATA 298 Query 18639 TTGTTTCCATAGAGTAAGGCTCCTGAGACAGGCTCACGAATACCATCTATGTCAACGGGA 18698 ||||||||||| || | ||| | ||||| |||||||||||||| || || || ||| Sbjct 299 TTGTTTCCATAACTTAGAGATCCATAAACAGGTTCACGAATACCATCAATATCCACTGGA 358 Query 18699 GGAGCAGCAACAAATGCAATCAAAAATGCTGTAGCTGCGGTTAAAAGTGCAGGGATCATA 18758 |||||||||| || || || | |||| | | || |||||| || | | ||||||||| Sbjct 359 GGAGCAGCAATGAAAGCGATAATAAATACAGAAGTTGCGGTCAATAAGGTAGGGATCATC 418 Query 18759 AGTACCCCAAACCACCCCACGTAGAGGCGGTTGTTTGTACT 18799 | || |||||||| || | ||| || ||||| | ||||| Sbjct 419 AAAACACCAAACCATCCAATGTAAAGACGGTTTTCGGTACT 459 >seq300680 Length=3790 Score = 149 bits (164), Expect = 2e-31 Identities = 221/306 (72%), Gaps = 8/306 (3%) Strand=Plus/Plus Query 18066 TTGTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATA 18125 ||||| || |||||||||||||||| | || ||||| || |||||||| || || ||| Sbjct 372 TTGTTGAAACTAGCATACTGGAAGACCAATCGGCCAAAATAACCATGAGCGGCTACGATA 431 Query 18126 TTATACGTCT-CTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGT 18184 ||||| || | |||||||||| || ||||| || || | || | | ||| || | Sbjct 432 TTATAAGTTTTCTTCTTCTTGACCGAATTTGTAACCTTCATTAGCAAATTCATTTTCTCT 491 Query 18185 CGTTTCTCTAAT--AAGT-GAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGC 18241 ||||| || || || | |||| || |||| || ||||||||| |||| | Sbjct 492 GGTTTC-CTGATTAAACTAGAGGT--TACCAAGGAA-CCATGCATAGCATTAAATAGGGA 547 Query 18242 TCCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTC 18301 | ||| ||| || || || | ||||| || || || |||||||| || ||||| || Sbjct 548 GCTGACGAGTACACCAGCTACGCTTAGCATGTGAAATGGGTGCATAAGAATGTTGTGCTC 607 Query 18302 GGCTTGGAATACGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGA 18361 | |||||||| | |||||| ||||||||||| ||| || ||||||||||||||||| Sbjct 608 AACCTGGAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGA 667 Query 18362 GAAACT 18367 || || Sbjct 668 AAAGCT 673 >seq250312 Length=8481 Score = 134 bits (148), Expect = 4e-27 Identities = 311/463 (67%), Gaps = 13/463 (3%) Strand=Plus/Minus Query 17841 TCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTTAGCTCTG 17900 ||||| ||||| ||||||||||||| || | ||||||||| | ||||||||||| | | Sbjct 2025 TCTAGAGGGAAATTATGAGCATTACATTCATACATAACTTCCATACCAAGGTTAGCACAG 1966 Query 17901 TTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCTCCAGCTG-CTACAATGGATTGGTT 17959 || | | |||||||| ||| | || || | | | ||| | || | ||||| | Sbjct 1965 TTAATGATATCAGCCCAAGTATTAATTACATGACATTGA-CTGTCGACTACAGATTGATG 1907 Query 17960 GAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAGCCATAT 18019 ||| | || ||||| || || ||||||||||| ||| || ||| || || Sbjct 1906 GAAACTAAAACCATTTAGGTTGTAAGCCATAGTGCTGATACC--------TAACACA-AT 1856 Query 18020 GCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTTAAAGCTAGC 18079 | || ||||||| ||| | ||||||||||| | | ||||| || ||||| Sbjct 1855 AAACCAGATAGGCCAAGTAGCTAGGAAGAAATGTAAAAAACGTGAGTTGTTGAAACTAGC 1796 Query 18080 ATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATACGTCTCTTC 18139 || ||||||| | || ||||| || |||||||| || |||||||| || | ||| | Sbjct 1795 ATGTCGGAAGATCAATCGACCAAAATAACCATGAGCGGCTACAATATTCTAATTTTCTCC 1736 Query 18140 TTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTCTCTAAT-AA 18198 |||||| || ||| |||| || | || | ||| || || ||||| || || || Sbjct 1735 TTCTTGACCGAATATATAACCTTCATTAGCTTATTCATTCTTTGTGGTTTCCCTGATCAA 1676 Query 18199 GTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTG 18258 ||| || |||| || |||||||| ||||| | | || | ||| || | Sbjct 1675 ACTAGGGGTTACCAAG-GAACCACGCATAGCACTGAATAGGGAGCTGCCAATTACACCAG 1617 Query 18259 CAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTC 18301 | || || ||||| || || | ||| |||| || ||||| || Sbjct 1616 CTACGCCTAGCATGTGAAATGAGTGCCTAAGAATGTTGTGCTC 1574 >seq10884 Length=5042 Score = 120 bits (132), Expect = 9e-23 Identities = 116/149 (78%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 18219 CCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAAC 18278 || || |||||| ||||| | || |||||||| || || || || ||||| || || Sbjct 3934 CCATGTATAGCAATGAATAGGGAGCCGCCGAATACACCAGCTACGCCTAGCATGTGAAAT 3875 Query 18279 GGATGCATAAGGATATTGTGTTCGGCTTGGAATACGAACATGAAATTGAAAGTACCGCTA 18338 || |||||||| || ||||| || || |||||||| | |||||| ||||||||||| | Sbjct 3874 GGGTGCATAAGAATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAA 3815 Query 18339 ATACCAAGAGGCATACCATCAGAGAAACT 18367 || || ||||||||||||||||| || || Sbjct 3814 ATTCCTAGAGGCATACCATCAGAAAAGCT 3786 >seq8631 Length=609 Score = 114 bits (126), Expect = 4e-21 Identities = 116/150 (77%), Gaps = 1/150 (1%) Strand=Plus/Plus Query 18219 CCGTGCATAGCAGCGAATAAAGCT-CCACCGAATACCCCTGCAACACCGAGCATATGGAA 18277 || ||||||||| |||| | | || |||||||| || || || | ||||| || || Sbjct 189 CCATGCATAGCACTGAATTAGGGAGCCGCCGAATACACCAGCTACGTCTAGCATGTGAAA 248 Query 18278 CGGATGCATAAGGATATTGTGTTCGGCTTGGAATACGAACATGAAATTGAAAGTACCGCT 18337 || |||||||| || ||||| ||||| |||||||| | |||||| ||||||||||| Sbjct 249 TGGGTGCATAAGAATGTTGTGCTCGGCCTGGAATACAATCATGAAGTTGAAAGTACCAGA 308 Query 18338 AATACCAAGAGGCATACCATCAGAGAAACT 18367 ||| || ||||||||||||||| | || || Sbjct 309 AATTCCTAGAGGCATACCATCAAAAAAGCT 338 Score = 96.9 bits (106), Expect = 1e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 18437 AATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATGTAAGCTGC 18496 |||||| ||||||||| | || | ||||||||||||| | || ||||||||| || Sbjct 342 AATCCAAGGGCGCATATCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAACAAGC 401 Query 18497 GATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCACTC 18556 | || | | ||||| | ||||| |||| ||| || || || || |||||||| || Sbjct 402 TACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCATTGTATAACCATTC 461 Query 18557 GTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTG 18592 || | || ||| |||||||| |||||||| || || Sbjct 462 ATCAATGGATGCTGCTTCCCATATTGGGTAAAAATG 497 >seq92275 Length=5108 Score = 104 bits (114), Expect = 7e-18 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 18621 ATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACAGGCTCACGAATA 18680 || || || || || || || ||| | || |||| | ||| || ||||| ||||||||| Sbjct 4634 ATGGCACCCGAGATAATATTATTTTCGTAAAGTAGAGATCCAGAAACAGGTTCACGAATA 4693 Query 18681 CCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAATGCTGTAGCTGCGGTT 18740 ||||| || || || ||||||||| ||| || ||||| | |||| | | || |||||| Sbjct 4694 CCATCAATATCTACTGGAGGAGCATCAATGAAGGCAATAATAAATACAGAAGTTGCGGTC 4753 Query 18741 AAAAGTGCAGGGATCATAAGTACCCCAAACCACCC 18775 || || | ||||||||| | || |||||||| || Sbjct 4754 AATAGGGTAGGGATCATCAAAACACCAAACCATCC 4788 >seq254652 Length=6058 Score = 102 bits (112), Expect = 2e-17 Identities = 196/288 (68%), Gaps = 1/288 (0%) Strand=Plus/Minus Query 18405 GCAGCTGCTACTGGTGCGGAATAAGCAACACAAATCCACGGGCGCATACCTAGTCTATAA 18464 ||||||| | || || ||||| |||||| |||| | || |||| ||| || | || Sbjct 956 GCAGCTGTAATAGGAGCTGAATATGCAACAACAATCAAAGGTCGCACACCCAGACGGAAA 897 Query 18465 CTAAGTTCCCATTGTCGTCCCATGTAAGCTGCGATGCCGATGAGAAAGTGGAACACAATG 18524 ||||||||||| | || ||||||||| || | || | | ||||| | ||||| Sbjct 896 CTAAGTTCCCACTCGCGACCCATGTAACACGCTACACCAAGTAAGAAGTGTAGTACAATT 837 Query 18525 AGTTGATATGGTCCTCCGTTATAT-AACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGG 18583 |||| ||| || || || || ||| ||||| || || | || |||||| | ||| | Sbjct 836 AGTTCATAAGGACCACCATTGTATAAACCATTCATCAACAAATGTTGCTTCCTATATTAG 777 Query 18584 GTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGATATGATGTTGTT 18643 ||| || || | ||| | || |||| | || | | | ||||| || || ||||| Sbjct 776 GTAAAAATGCAAACCTGTAGCTGTAGAAGTAGGAATAACAACACCTGAAATAATATTGTT 717 Query 18644 TCCATAGAGTAAGGCTCCTGAGACAGGCTCACGAATACCATCTATGTC 18691 |||||| |||| | | | | ||| ||| |||||||||| || || Sbjct 716 TCCATAAAGTAGAGATGTAAAAATAGGTTCATGAATACCATCAATATC 669 >seq231965 Length=7494 Score = 80.6 bits (88), Expect = 8e-11 Identities = 131/186 (70%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 18261 ACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAATACGAACATG 18320 || || ||||| | || || |||||||| || ||||| || | | ||||| | |||| Sbjct 6766 ACGCCTAGCATGTAAAATGGGTGCATAAGAATGTTGTGCTCAACCTTAAATACAATCATG 6707 Query 18321 AAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAA 18380 || ||||||||||| ||| || ||||| ||||||| ||| || || | ||| | || Sbjct 6706 AAGTTGAAAGTACCATAAATTCCTAGAGGAATACCATGAGAAAAGCTTCATTGACAAATT 6647 Query 18381 GGATA-AACGAGAAATACTGAGAAGGCAGCTGCTACTGGTGCGGAATAAGCAACACAAAT 18439 || || | | ||||| | || |||| ||| || | || | ||| |||||| ||| Sbjct 6646 GGGTAGATCAAGAAAACATCAG-TCGCAGTTGCAACAAGAGCTGGATATGCAACAATAAT 6588 Query 18440 CCACGG 18445 ||| || Sbjct 6587 CCAAGG 6582 >seq176507 Length=311 Score = 80.6 bits (88), Expect = 8e-11 Identities = 59/69 (86%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893 |||||| ||||| ||||| |||||||||||||| || ||||||||||| | |||||||| Sbjct 177 AGCTAAGTCTAGAGGGAAATTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTT 118 Query 17894 AGCTCTGTT 17902 ||| | ||| Sbjct 117 AGCCCGGTT 109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150484804525164