Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27]
463,906 sequences; 661,937,708 total letters
Query= NC_020835.1
Length=47325
Score E
Sequences producing significant alignments: (Bits) Value
seq107965 288 3e-73
seq169634 251 2e-62
seq300680 149 2e-31
seq250312 134 4e-27
seq10884 120 9e-23
seq8631 114 4e-21
seq92275 104 7e-18
seq254652 102 2e-17
seq231965 80.6 8e-11
seq176507 80.6 8e-11
>seq107965
Length=6474
Score = 288 bits (318), Expect = 3e-73
Identities = 418/588 (71%), Gaps = 2/588 (0%)
Strand=Plus/Minus
Query 18066 TTGTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATA 18125
||||| || |||||||| |||||||| | || ||||| || |||||| | || || |||
Sbjct 6459 TTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAACGGCTACGATA 6400
Query 18126 TTATACGTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTC 18185
||||| || || |||||| | |||||| | || || | || ||| | | || ||
Sbjct 6399 TTATAAGTTTCATCTTCTAGACCAAATCTGTAACCTTCATTAGCAGATTTATTTTCTGTG 6340
Query 18186 GTTTCTCTAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCA 18245
||||| || || | | || || || | || ||||||||| ||||| | ||
Sbjct 6339 GTTTCCCTGATCAAACAAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCG 6280
Query 18246 CCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCT 18305
|||| ||| || || ||||| ||||| || || || |||||||| || ||||| || ||
Sbjct 6279 CCGATTACACCAGCTACACCTAGCATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGCC 6220
Query 18306 TGGAATACGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAA 18365
|||||||| | |||||| ||||||||||| ||| || ||||||||||||||||| ||
Sbjct 6219 TGGAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAG 6160
Query 18366 CTCCCTTGTCCAAAAGGATA-AACGAGAAATACTGAGAAGGCAGCTGCTACTGGTGCGGA 18424
|| ||||| |||| || || | | ||||| || |||||||| || || || ||
Sbjct 6159 CTTCCTTGACCAATTGGGTAGATCAAGAAA-ACAACACTCGCAGCTGCAACAGGAGCTGA 6101
Query 18425 ATAAGCAACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCC 18484
||| |||||| ||||| | |||||||| || | | ||||||||||||| | || ||
Sbjct 6100 ATATGCAACAACCATCCAAGTTCGCATACCCAGACGAAAACTAAGTTCCCACTCACGACC 6041
Query 18485 CATGTAAGCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTT 18544
||||||| || | || | | ||||| | ||||| |||| ||| || || || ||
Sbjct 6040 CATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCATT 5981
Query 18545 ATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGC 18604
|||||||| || || | | || |||||||| |||||||| || || | ||| || ||
Sbjct 5980 GTATAACCATTCATCAACAGATGTTGCTTCCCATATTGGGTAAAAATGCAAACCTATAGC 5921
Query 18605 GTTAGATGACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAG 18652
||| || | || | ||| | || || ||||||||||| ||
Sbjct 5920 TGCAGAAATAGGAATAATGGTACCTAAAATAATATTGTTTCCATAAAG 5873
>seq169634
Length=720
Score = 251 bits (278), Expect = 2e-62
Identities = 335/461 (73%), Gaps = 6/461 (1%)
Strand=Plus/Plus
Query 18342 CCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGATAAA-CGAGAAATACTGA 18400
|| ||||||||||||||||| || || ||||| |||| || || | | ||||| || |
Sbjct 2 CCTAGAGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGGTAGATCAAGAAA-AC--A 58
Query 18401 GAAG--GCAGCTGCTACTGGTGCGGAATAAGCAACACAAATCCACGGGCGCATACCTAGT 18458
| || |||||||| || | || ||||| |||||| |||||| || |||||||| ||
Sbjct 59 GCAGTTGCAGCTGCAACAGAAGCTGAATATGCAACAACAATCCAAGGTCGCATACCCAGA 118
Query 18459 CTATAACTAAGTTCCCATTGTCGTCCCATGTAAGCTGCGATGCCGATGAGAAAGTGGAAC 18518
| ||||||||||||| | || ||||||||| || | || | | ||||| |
Sbjct 119 CGGAAACTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGA 178
Query 18519 ACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAG 18578
||||| |||| ||| || || || || |||||||| || || | || ||| ||||||||
Sbjct 179 ACAATTAGTTCATAAGGACCACCATTGTATAACCATTCATCAACGGATGCTGCTTCCCAT 238
Query 18579 ATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGATATGATG 18638
|||||||| || || | ||| || || ||| | || | || | ||||| || ||
Sbjct 239 ATTGGGTAAAAATGCAAACCTATAGCTGCAGAAGTAGGAATAATGACACCTGAAATAATA 298
Query 18639 TTGTTTCCATAGAGTAAGGCTCCTGAGACAGGCTCACGAATACCATCTATGTCAACGGGA 18698
||||||||||| || | ||| | ||||| |||||||||||||| || || || |||
Sbjct 299 TTGTTTCCATAACTTAGAGATCCATAAACAGGTTCACGAATACCATCAATATCCACTGGA 358
Query 18699 GGAGCAGCAACAAATGCAATCAAAAATGCTGTAGCTGCGGTTAAAAGTGCAGGGATCATA 18758
|||||||||| || || || | |||| | | || |||||| || | | |||||||||
Sbjct 359 GGAGCAGCAATGAAAGCGATAATAAATACAGAAGTTGCGGTCAATAAGGTAGGGATCATC 418
Query 18759 AGTACCCCAAACCACCCCACGTAGAGGCGGTTGTTTGTACT 18799
| || |||||||| || | ||| || ||||| | |||||
Sbjct 419 AAAACACCAAACCATCCAATGTAAAGACGGTTTTCGGTACT 459
>seq300680
Length=3790
Score = 149 bits (164), Expect = 2e-31
Identities = 221/306 (72%), Gaps = 8/306 (3%)
Strand=Plus/Plus
Query 18066 TTGTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATA 18125
||||| || |||||||||||||||| | || ||||| || |||||||| || || |||
Sbjct 372 TTGTTGAAACTAGCATACTGGAAGACCAATCGGCCAAAATAACCATGAGCGGCTACGATA 431
Query 18126 TTATACGTCT-CTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGT 18184
||||| || | |||||||||| || ||||| || || | || | | ||| || |
Sbjct 432 TTATAAGTTTTCTTCTTCTTGACCGAATTTGTAACCTTCATTAGCAAATTCATTTTCTCT 491
Query 18185 CGTTTCTCTAAT--AAGT-GAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGC 18241
||||| || || || | |||| || |||| || ||||||||| |||| |
Sbjct 492 GGTTTC-CTGATTAAACTAGAGGT--TACCAAGGAA-CCATGCATAGCATTAAATAGGGA 547
Query 18242 TCCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTC 18301
| ||| ||| || || || | ||||| || || || |||||||| || ||||| ||
Sbjct 548 GCTGACGAGTACACCAGCTACGCTTAGCATGTGAAATGGGTGCATAAGAATGTTGTGCTC 607
Query 18302 GGCTTGGAATACGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGA 18361
| |||||||| | |||||| ||||||||||| ||| || |||||||||||||||||
Sbjct 608 AACCTGGAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGA 667
Query 18362 GAAACT 18367
|| ||
Sbjct 668 AAAGCT 673
>seq250312
Length=8481
Score = 134 bits (148), Expect = 4e-27
Identities = 311/463 (67%), Gaps = 13/463 (3%)
Strand=Plus/Minus
Query 17841 TCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTTAGCTCTG 17900
||||| ||||| ||||||||||||| || | ||||||||| | ||||||||||| | |
Sbjct 2025 TCTAGAGGGAAATTATGAGCATTACATTCATACATAACTTCCATACCAAGGTTAGCACAG 1966
Query 17901 TTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCTCCAGCTG-CTACAATGGATTGGTT 17959
|| | | |||||||| ||| | || || | | | ||| | || | ||||| |
Sbjct 1965 TTAATGATATCAGCCCAAGTATTAATTACATGACATTGA-CTGTCGACTACAGATTGATG 1907
Query 17960 GAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAGCCATAT 18019
||| | || ||||| || || ||||||||||| ||| || ||| || ||
Sbjct 1906 GAAACTAAAACCATTTAGGTTGTAAGCCATAGTGCTGATACC--------TAACACA-AT 1856
Query 18020 GCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTTAAAGCTAGC 18079
| || ||||||| ||| | ||||||||||| | | ||||| || |||||
Sbjct 1855 AAACCAGATAGGCCAAGTAGCTAGGAAGAAATGTAAAAAACGTGAGTTGTTGAAACTAGC 1796
Query 18080 ATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATACGTCTCTTC 18139
|| ||||||| | || ||||| || |||||||| || |||||||| || | ||| |
Sbjct 1795 ATGTCGGAAGATCAATCGACCAAAATAACCATGAGCGGCTACAATATTCTAATTTTCTCC 1736
Query 18140 TTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTCTCTAAT-AA 18198
|||||| || ||| |||| || | || | ||| || || ||||| || || ||
Sbjct 1735 TTCTTGACCGAATATATAACCTTCATTAGCTTATTCATTCTTTGTGGTTTCCCTGATCAA 1676
Query 18199 GTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTG 18258
||| || |||| || |||||||| ||||| | | || | ||| || |
Sbjct 1675 ACTAGGGGTTACCAAG-GAACCACGCATAGCACTGAATAGGGAGCTGCCAATTACACCAG 1617
Query 18259 CAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTC 18301
| || || ||||| || || | ||| |||| || ||||| ||
Sbjct 1616 CTACGCCTAGCATGTGAAATGAGTGCCTAAGAATGTTGTGCTC 1574
>seq10884
Length=5042
Score = 120 bits (132), Expect = 9e-23
Identities = 116/149 (78%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 18219 CCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAAC 18278
|| || |||||| ||||| | || |||||||| || || || || ||||| || ||
Sbjct 3934 CCATGTATAGCAATGAATAGGGAGCCGCCGAATACACCAGCTACGCCTAGCATGTGAAAT 3875
Query 18279 GGATGCATAAGGATATTGTGTTCGGCTTGGAATACGAACATGAAATTGAAAGTACCGCTA 18338
|| |||||||| || ||||| || || |||||||| | |||||| ||||||||||| |
Sbjct 3874 GGGTGCATAAGAATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAA 3815
Query 18339 ATACCAAGAGGCATACCATCAGAGAAACT 18367
|| || ||||||||||||||||| || ||
Sbjct 3814 ATTCCTAGAGGCATACCATCAGAAAAGCT 3786
>seq8631
Length=609
Score = 114 bits (126), Expect = 4e-21
Identities = 116/150 (77%), Gaps = 1/150 (1%)
Strand=Plus/Plus
Query 18219 CCGTGCATAGCAGCGAATAAAGCT-CCACCGAATACCCCTGCAACACCGAGCATATGGAA 18277
|| ||||||||| |||| | | || |||||||| || || || | ||||| || ||
Sbjct 189 CCATGCATAGCACTGAATTAGGGAGCCGCCGAATACACCAGCTACGTCTAGCATGTGAAA 248
Query 18278 CGGATGCATAAGGATATTGTGTTCGGCTTGGAATACGAACATGAAATTGAAAGTACCGCT 18337
|| |||||||| || ||||| ||||| |||||||| | |||||| |||||||||||
Sbjct 249 TGGGTGCATAAGAATGTTGTGCTCGGCCTGGAATACAATCATGAAGTTGAAAGTACCAGA 308
Query 18338 AATACCAAGAGGCATACCATCAGAGAAACT 18367
||| || ||||||||||||||| | || ||
Sbjct 309 AATTCCTAGAGGCATACCATCAAAAAAGCT 338
Score = 96.9 bits (106), Expect = 1e-15
Identities = 115/156 (74%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 18437 AATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATGTAAGCTGC 18496
|||||| ||||||||| | || | ||||||||||||| | || ||||||||| ||
Sbjct 342 AATCCAAGGGCGCATATCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAACAAGC 401
Query 18497 GATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCACTC 18556
| || | | ||||| | ||||| |||| ||| || || || || |||||||| ||
Sbjct 402 TACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCATTGTATAACCATTC 461
Query 18557 GTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTG 18592
|| | || ||| |||||||| |||||||| || ||
Sbjct 462 ATCAATGGATGCTGCTTCCCATATTGGGTAAAAATG 497
>seq92275
Length=5108
Score = 104 bits (114), Expect = 7e-18
Identities = 116/155 (75%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 18621 ATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACAGGCTCACGAATA 18680
|| || || || || || || ||| | || |||| | ||| || ||||| |||||||||
Sbjct 4634 ATGGCACCCGAGATAATATTATTTTCGTAAAGTAGAGATCCAGAAACAGGTTCACGAATA 4693
Query 18681 CCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAATGCTGTAGCTGCGGTT 18740
||||| || || || ||||||||| ||| || ||||| | |||| | | || ||||||
Sbjct 4694 CCATCAATATCTACTGGAGGAGCATCAATGAAGGCAATAATAAATACAGAAGTTGCGGTC 4753
Query 18741 AAAAGTGCAGGGATCATAAGTACCCCAAACCACCC 18775
|| || | ||||||||| | || |||||||| ||
Sbjct 4754 AATAGGGTAGGGATCATCAAAACACCAAACCATCC 4788
>seq254652
Length=6058
Score = 102 bits (112), Expect = 2e-17
Identities = 196/288 (68%), Gaps = 1/288 (0%)
Strand=Plus/Minus
Query 18405 GCAGCTGCTACTGGTGCGGAATAAGCAACACAAATCCACGGGCGCATACCTAGTCTATAA 18464
||||||| | || || ||||| |||||| |||| | || |||| ||| || | ||
Sbjct 956 GCAGCTGTAATAGGAGCTGAATATGCAACAACAATCAAAGGTCGCACACCCAGACGGAAA 897
Query 18465 CTAAGTTCCCATTGTCGTCCCATGTAAGCTGCGATGCCGATGAGAAAGTGGAACACAATG 18524
||||||||||| | || ||||||||| || | || | | ||||| | |||||
Sbjct 896 CTAAGTTCCCACTCGCGACCCATGTAACACGCTACACCAAGTAAGAAGTGTAGTACAATT 837
Query 18525 AGTTGATATGGTCCTCCGTTATAT-AACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGG 18583
|||| ||| || || || || ||| ||||| || || | || |||||| | ||| |
Sbjct 836 AGTTCATAAGGACCACCATTGTATAAACCATTCATCAACAAATGTTGCTTCCTATATTAG 777
Query 18584 GTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGATATGATGTTGTT 18643
||| || || | ||| | || |||| | || | | | ||||| || || |||||
Sbjct 776 GTAAAAATGCAAACCTGTAGCTGTAGAAGTAGGAATAACAACACCTGAAATAATATTGTT 717
Query 18644 TCCATAGAGTAAGGCTCCTGAGACAGGCTCACGAATACCATCTATGTC 18691
|||||| |||| | | | | ||| ||| |||||||||| || ||
Sbjct 716 TCCATAAAGTAGAGATGTAAAAATAGGTTCATGAATACCATCAATATC 669
>seq231965
Length=7494
Score = 80.6 bits (88), Expect = 8e-11
Identities = 131/186 (70%), Gaps = 2/186 (1%)
Strand=Plus/Minus
Query 18261 ACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAATACGAACATG 18320
|| || ||||| | || || |||||||| || ||||| || | | ||||| | ||||
Sbjct 6766 ACGCCTAGCATGTAAAATGGGTGCATAAGAATGTTGTGCTCAACCTTAAATACAATCATG 6707
Query 18321 AAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAA 18380
|| ||||||||||| ||| || ||||| ||||||| ||| || || | ||| | ||
Sbjct 6706 AAGTTGAAAGTACCATAAATTCCTAGAGGAATACCATGAGAAAAGCTTCATTGACAAATT 6647
Query 18381 GGATA-AACGAGAAATACTGAGAAGGCAGCTGCTACTGGTGCGGAATAAGCAACACAAAT 18439
|| || | | ||||| | || |||| ||| || | || | ||| |||||| |||
Sbjct 6646 GGGTAGATCAAGAAAACATCAG-TCGCAGTTGCAACAAGAGCTGGATATGCAACAATAAT 6588
Query 18440 CCACGG 18445
||| ||
Sbjct 6587 CCAAGG 6582
>seq176507
Length=311
Score = 80.6 bits (88), Expect = 8e-11
Identities = 59/69 (86%), Gaps = 0/69 (0%)
Strand=Plus/Minus
Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893
|||||| ||||| ||||| |||||||||||||| || ||||||||||| | ||||||||
Sbjct 177 AGCTAAGTCTAGAGGGAAATTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTT 118
Query 17894 AGCTCTGTT 17902
||| | |||
Sbjct 117 AGCCCGGTT 109
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 150484804525164
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