Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27]
463,906 sequences; 661,937,708 total letters
Query= NC_020837.1
Length=198013
Score E
Sequences producing significant alignments: (Bits) Value
seq107965 324 2e-83
seq169634 230 3e-55
seq300680 179 5e-40
seq8631 132 6e-26
seq250312 123 3e-23
seq58055 102 1e-16
seq292072 95.1 2e-14
seq449122 91.5 2e-13
seq92275 87.8 2e-12
>seq107965
Length=6474
Score = 324 bits (358), Expect = 2e-83
Identities = 397/542 (73%), Gaps = 0/542 (0%)
Strand=Plus/Minus
Query 103403 GAGTTGTTGAATGATGCGTATTGGAAGATCAAACGACCGAAGTAACCATGAGCGGCTACG 103462
||||||||||| || |||||||||||||| || || || ||||||||| ||||||||
Sbjct 6462 GAGTTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAACGGCTACG 6403
Query 103463 ATGTTGTATGTCTCTTCCTCTTGTCCGAACTTGTAACCATAGTTTTGAGATTCAGTTTCA 103522
|| || || || || || ||| | || || ||||||| | || ||||| | ||||
Sbjct 6402 ATATTATAAGTTTCATCTTCTAGACCAAATCTGTAACCTTCATTAGCAGATTTATTTTCT 6343
Query 103523 GTCGTCTCACGAACCAGCGAGGACGTAACAAGCGAACCGTGCATAGCACTGAACAGTGAA 103582
|| || || | | || | || || || | ||||| |||||||||||||| || ||
Sbjct 6342 GTGGTTTCCCTGATCAAACAAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAG 6283
Query 103583 CCACCGAAGACTCCAGCAACGCCCAGCATGTGGAAGGGGTGCATGAGAATGTTATGTTCG 103642
|| |||| || ||||| || || |||||||| || |||||||| |||||||| || ||
Sbjct 6282 CCGCCGATTACACCAGCTACACCTAGCATGTGAAATGGGTGCATAAGAATGTTGTGCTCA 6223
Query 103643 GCTTGGAAGACCAGCATGTAGTTGAAGGTTCCCGAAATACCCAAAGGCATAGCATCGGAG 103702
|| ||||| || | |||| ||||||| || || ||||| || | ||||||| |||| ||
Sbjct 6222 GCCTGGAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAA 6163
Query 103703 AACGAACCTTGACCAAAGGGGTAGACCAAGAATACTGCGGACGCAGCCGCAACAGGAGCA 103762
|| |||||||||| ||||||| |||||| || | |||||| |||||||||||
Sbjct 6162 AAGCTTCCTTGACCAATTGGGTAGATCAAGAAAACAACACTCGCAGCTGCAACAGGAGCT 6103
Query 103763 GAGTATGCGACACAGATCCAGGGGCGCATGCCCAGACGGTAGGACAATTCCCACTCACGT 103822
|| ||||| ||| ||||| | ||||| |||||||| | | ||||||||||||
Sbjct 6102 GAATATGCAACAACCATCCAAGTTCGCATACCCAGACGAAAACTAAGTTCCCACTCACGA 6043
Query 103823 CCCATATATGCATAGATGCCAATGAGGAAGTGGAATACTACAAGTTGGAAAGGACCACCG 103882
||||| || | | |||| | |||||| | || | |||| ||||||||||
Sbjct 6042 CCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCA 5983
Query 103883 TTATACAGCCACTCATCAAGAGATGCTGCTTCCCAAATGGGATAGAAGTGAAGACCAATT 103942
|| || | ||| ||||||| ||||| ||||||||| || || || || || | ||| ||
Sbjct 5982 TTGTATAACCATTCATCAACAGATGTTGCTTCCCATATTGGGTAAAAATGCAAACCTATA 5923
Query 103943 GC 103944
||
Sbjct 5922 GC 5921
>seq169634
Length=720
Score = 230 bits (254), Expect = 3e-55
Identities = 322/447 (72%), Gaps = 6/447 (1%)
Strand=Plus/Plus
Query 103687 AGGCATAGCATCGGAGAACGAACCTTGACCAAAGGGGTAGACCAAGAATACTGCGGACGC 103746
||||||| |||| || || |||||||||| ||||||| |||||| || || | ||
Sbjct 7 AGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTTGC 66
Query 103747 AGCCGCAACAGGAGCAGAGTATGCGACACAGATCCAGGGGCGCATGCCCAGACGGTAGGA 103806
||| ||||||| ||| || ||||| ||| ||||| || ||||| ||||||||| |
Sbjct 67 AGCTGCAACAGAAGCTGAATATGCAACAACAATCCAAGGTCGCATACCCAGACGGAAACT 126
Query 103807 CAATTCCCACTCACGTCCCATATATGCATAGATGCCAATGAGGAAGTGGAATACTACAAG 103866
| |||||||||||| ||||| || | | |||| | |||||| | || | ||
Sbjct 127 AAGTTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAG 186
Query 103867 TTGGAAAGGACCACCGTTATACAGCCACTCATCAAGAGATGCTGCTTCCCAAATGGGATA 103926
|| |||||||||| || || | ||| ||||||| |||||||||||||| || || ||
Sbjct 187 TTCATAAGGACCACCATTGTATAACCATTCATCAACGGATGCTGCTTCCCATATTGGGTA 246
Query 103927 GAAGTGAAGACCAATTGCGTTGGAGGAG--GGAACAACTGCACCAGAGATGATGTTGTTA 103984
|| || | ||| || || || || || |||| || |||| || || || |||||
Sbjct 247 AAAATGCAAACCTATAGC--TGCAGAAGTAGGAATAATGACACCTGAAATAATATTGTTT 304
Query 103985 CCGTACATGAGTGAACCAGCGACGGGTTCACGAATGCCGTCGATATCGACGGGAGGTGCT 104044
|| || | || || ||| || ||||||||||| || || ||||| || ||||| ||
Sbjct 305 CCATAACTTAGAGATCCATAAACAGGTTCACGAATACCATCAATATCCACTGGAGGAGCA 364
Query 104045 GCTACGAAAGCAACGATGAA-GCAGATGGTTGCCGCCAACAGAGTTGGGATCATCAGCAC 104103
|| | |||||| | || || |||| ||||| | ||| | || |||||||||| ||
Sbjct 365 GCAATGAAAGCGATAATAAATACAGA-AGTTGCGGTCAATAAGGTAGGGATCATCAAAAC 423
Query 104104 ACCGAACCAACCAACATAGAGACGGTT 104130
||| ||||| |||| || ||||||||
Sbjct 424 ACCAAACCATCCAATGTAAAGACGGTT 450
>seq300680
Length=3790
Score = 179 bits (198), Expect = 5e-40
Identities = 223/303 (74%), Gaps = 2/303 (1%)
Strand=Plus/Plus
Query 103403 GAGTTGTTGAATGATGCGTATTGGAAGATCAAACGACCGAAGTAACCATGAGCGGCTACG 103462
||||||||||| || || ||||||| ||| || || || ||||||||||||||||||
Sbjct 369 GAGTTGTTGAAACTAGCATACTGGAAGACCAATCGGCCAAAATAACCATGAGCGGCTACG 428
Query 103463 ATGTTGTATG-TCTCTTCCTCTTGTCCGAACTTGTAACCATAGTTTTGAGATTCAGTTTC 103521
|| || || | | ||||| ||||| ||||| |||||||| | || | ||||| ||||
Sbjct 429 ATATTATAAGTTTTCTTCTTCTTGACCGAATTTGTAACCTTCATTAGCAAATTCATTTTC 488
Query 103522 AGTCGTCTCACGAACCAGCGAGGACGTAACAAGCGAACCGTGCATAGCACTGAACAGTGA 103581
| || || || | | | || || || | ||||| ||||||||| | || || ||
Sbjct 489 TCTGGTTTCCTGATTAAACTA-GAGGTTACCAAGGAACCATGCATAGCATTAAATAGGGA 547
Query 103582 ACCACCGAAGACTCCAGCAACGCCCAGCATGTGGAAGGGGTGCATGAGAATGTTATGTTC 103641
| ||| || ||||| |||| |||||||| || |||||||| |||||||| || ||
Sbjct 548 GCTGACGAGTACACCAGCTACGCTTAGCATGTGAAATGGGTGCATAAGAATGTTGTGCTC 607
Query 103642 GGCTTGGAAGACCAGCATGTAGTTGAAGGTTCCCGAAATACCCAAAGGCATAGCATCGGA 103701
| ||||| || | |||| ||||||| || || ||||| || | ||||||| |||| ||
Sbjct 608 AACCTGGAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGA 667
Query 103702 GAA 103704
||
Sbjct 668 AAA 670
>seq8631
Length=609
Score = 132 bits (146), Expect = 6e-26
Identities = 122/152 (80%), Gaps = 2/152 (1%)
Strand=Plus/Plus
Query 103548 TAACAAGCGAACCGTGCATAGCACTGAA-CAGTGAACCACCGAAGACTCCAGCAACGCCC 103606
|| |||| ||||| |||||||||||||| || || || ||||| || ||||| ||| |
Sbjct 179 TACCAAG-GAACCATGCATAGCACTGAATTAGGGAGCCGCCGAATACACCAGCTACGTCT 237
Query 103607 AGCATGTGGAAGGGGTGCATGAGAATGTTATGTTCGGCTTGGAAGACCAGCATGTAGTTG 103666
|||||||| || |||||||| |||||||| || ||||| ||||| || | |||| |||||
Sbjct 238 AGCATGTGAAATGGGTGCATAAGAATGTTGTGCTCGGCCTGGAATACAATCATGAAGTTG 297
Query 103667 AAGGTTCCCGAAATACCCAAAGGCATAGCATC 103698
|| || || ||||| || | ||||||| ||||
Sbjct 298 AAAGTACCAGAAATTCCTAGAGGCATACCATC 329
Score = 86.0 bits (94), Expect = 8e-12
Identities = 112/155 (72%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 103778 ATCCAGGGGCGCATGCCCAGACGGTAGGACAATTCCCACTCACGTCCCATATATGCATAG 103837
||||| |||||||| |||||||| | | |||||||||||| ||||| || |
Sbjct 343 ATCCAAGGGCGCATATCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAACAAGCT 402
Query 103838 ATGCCAATGAGGAAGTGGAATACTACAAGTTGGAAAGGACCACCGTTATACAGCCACTCA 103897
| |||| | |||||| | || | |||| |||||||||| || || | ||| |||
Sbjct 403 ACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCATTGTATAACCATTCA 462
Query 103898 TCAAGAGATGCTGCTTCCCAAATGGGATAGAAGTG 103932
|||| |||||||||||||| || || || || ||
Sbjct 463 TCAATGGATGCTGCTTCCCATATTGGGTAAAAATG 497
>seq250312
Length=8481
Score = 123 bits (136), Expect = 3e-23
Identities = 173/240 (72%), Gaps = 2/240 (1%)
Strand=Plus/Minus
Query 103403 GAGTTGTTGAATGATGCGTATTGGAAGATCAAACGACCGAAGTAACCATGAGCGGCTACG 103462
||||||||||| || | | |||||||||| ||||| || |||||||||||||||||
Sbjct 1812 GAGTTGTTGAAACTAGCATGTCGGAAGATCAATCGACCAAAATAACCATGAGCGGCTACA 1753
Query 103463 ATGTTGTATGTCTCTTCCTCTTGTCCGAACTTGTAACCATAGTTTTGAGATTCAGTTTCA 103522
|| || || | ||| | ||||| ||||| | ||||| | || ||||| | |
Sbjct 1752 ATATTCTAATTTTCTCCTTCTTGACCGAATATATAACCTTCATTAGCTTATTCATTCTTT 1693
Query 103523 GTCGTCTCAC-GAACCAGCGAGGACGTAACAAGCGAACCGTGCATAGCACTGAACAGTGA 103581
|| || || | || | | | ||| || |||| ||||| ||||||||||||| || ||
Sbjct 1692 GTGGTTTCCCTGATCAAACTAGGGGTTACCAAG-GAACCACGCATAGCACTGAATAGGGA 1634
Query 103582 ACCACCGAAGACTCCAGCAACGCCCAGCATGTGGAAGGGGTGCATGAGAATGTTATGTTC 103641
| || | || ||||| ||||| |||||||| || | |||| | |||||||| || ||
Sbjct 1633 GCTGCCAATTACACCAGCTACGCCTAGCATGTGAAATGAGTGCCTAAGAATGTTGTGCTC 1574
>seq58055
Length=1185
Score = 102 bits (112), Expect = 1e-16
Identities = 131/181 (72%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 102004 GACCAGAAACGGTTTGCTGTAACCATTGAATAAGTCTCTTCCTCTTGTGTGGAATCGAAT 102063
||||| || || || || || |||||||||||||| ||||| |||| || | | ||
Sbjct 181 GACCAAAAGCGATTAGCAGTGACCATTGAATAAGTTTCTTCAGCTTGAGTTGGGTTAAAA 122
Query 102064 GCTTTGAAAGTGTTTGCTTGATCACCATCTTCATACAGAGTGTTCTCCACAGTGACACCG 102123
|| ||| || ||||| ||||||||||||| | | ||| || || ||||| || |
Sbjct 121 GCACAGAATGTATTTGCGCCATCACCATCTTCAAATAAAGTATTTTCTACAGTAGCATCA 62
Query 102124 TGGATTGCTGACAGCAGTGCTCCTCCCAGGATACCTGCAACACCCATCATATGGAATGGG 102183
|| || || | |||| || | |||| | ||| ||||| ||||||||||| ||||||
Sbjct 61 TGAATAGCGCATAGCAAAGCAGCACCCAATACACCGGCAACTCCCATCATATGAAATGGG 2
Query 102184 T 102184
|
Sbjct 1 T 1
>seq292072
Length=5858
Score = 95.1 bits (104), Expect = 2e-14
Identities = 87/110 (79%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 101944 ACAAAGAGCATAAAGAAATGCAACCACCTCTTATTACTAAATGCAATACCAAAGATTTGA 102003
||||| | |||||||||||| ||||| | ||||| ||| |||| |||||||||||
Sbjct 1433 ACAAATAACATAAAGAAATGTAACCAACGTTTATTGAAAAAGGCAACCCCAAAGATTTGG 1492
Query 102004 GACCAGAAACGGTTTGCTGTAACCATTGAATAAGTCTCTTCCTCTTGTGT 102053
||||| || || || || || |||||||||||||| ||||| |||| ||
Sbjct 1493 GACCAAAAGCGATTAGCAGTGACCATTGAATAAGTTTCTTCAGCTTGAGT 1542
>seq449122
Length=870
Score = 91.5 bits (100), Expect = 2e-13
Identities = 68/80 (85%), Gaps = 0/80 (0%)
Strand=Plus/Minus
Query 103419 CGTATTGGAAGATCAAACGACCGAAGTAACCATGAGCGGCTACGATGTTGTATGTCTCTT 103478
|||||||||||||||| | || || |||||||||||||||||||| ||||| || ||||
Sbjct 255 CGTATTGGAAGATCAATTGGCCAAAATAACCATGAGCGGCTACGATATTGTAAGTTTCTT 196
Query 103479 CCTCTTGTCCGAACTTGTAA 103498
| ||||| ||||| |||||
Sbjct 195 CTTCTTGACCGAATCTGTAA 176
>seq92275
Length=5108
Score = 87.8 bits (96), Expect = 2e-12
Identities = 118/162 (73%), Gaps = 2/162 (1%)
Strand=Plus/Plus
Query 103955 GGAACAACTGCACCAGAGATGATGTTGTTACCGTACATGAGTGAACCAGCGACGGGTTCA 104014
|||| || ||||| ||||| || || || |||| | || || |||| || ||||||
Sbjct 4628 GGAATAATGGCACCCGAGATAATATTATTTTCGTAAAGTAGAGATCCAGAAACAGGTTCA 4687
Query 104015 CGAATGCCGTCGATATCGACGGGAGGTGCTGCTACGAAAGCAACGATGAA-GCAGATGGT 104073
||||| || || ||||| || ||||| || | | ||| |||| || || |||| ||
Sbjct 4688 CGAATACCATCAATATCTACTGGAGGAGCATCAATGAAGGCAATAATAAATACAGA-AGT 4746
Query 104074 TGCCGCCAACAGAGTTGGGATCATCAGCACACCGAACCAACC 104115
||| | ||| || || |||||||||| ||||| ||||| ||
Sbjct 4747 TGCGGTCAATAGGGTAGGGATCATCAAAACACCAAACCATCC 4788
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629839965498480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |