Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq107965 324 2e-83 seq169634 230 3e-55 seq300680 179 5e-40 seq8631 132 6e-26 seq250312 123 3e-23 seq58055 102 1e-16 seq292072 95.1 2e-14 seq449122 91.5 2e-13 seq92275 87.8 2e-12 >seq107965 Length=6474 Score = 324 bits (358), Expect = 2e-83 Identities = 397/542 (73%), Gaps = 0/542 (0%) Strand=Plus/Minus Query 103403 GAGTTGTTGAATGATGCGTATTGGAAGATCAAACGACCGAAGTAACCATGAGCGGCTACG 103462 ||||||||||| || |||||||||||||| || || || ||||||||| |||||||| Sbjct 6462 GAGTTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAACGGCTACG 6403 Query 103463 ATGTTGTATGTCTCTTCCTCTTGTCCGAACTTGTAACCATAGTTTTGAGATTCAGTTTCA 103522 || || || || || || ||| | || || ||||||| | || ||||| | |||| Sbjct 6402 ATATTATAAGTTTCATCTTCTAGACCAAATCTGTAACCTTCATTAGCAGATTTATTTTCT 6343 Query 103523 GTCGTCTCACGAACCAGCGAGGACGTAACAAGCGAACCGTGCATAGCACTGAACAGTGAA 103582 || || || | | || | || || || | ||||| |||||||||||||| || || Sbjct 6342 GTGGTTTCCCTGATCAAACAAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAG 6283 Query 103583 CCACCGAAGACTCCAGCAACGCCCAGCATGTGGAAGGGGTGCATGAGAATGTTATGTTCG 103642 || |||| || ||||| || || |||||||| || |||||||| |||||||| || || Sbjct 6282 CCGCCGATTACACCAGCTACACCTAGCATGTGAAATGGGTGCATAAGAATGTTGTGCTCA 6223 Query 103643 GCTTGGAAGACCAGCATGTAGTTGAAGGTTCCCGAAATACCCAAAGGCATAGCATCGGAG 103702 || ||||| || | |||| ||||||| || || ||||| || | ||||||| |||| || Sbjct 6222 GCCTGGAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAA 6163 Query 103703 AACGAACCTTGACCAAAGGGGTAGACCAAGAATACTGCGGACGCAGCCGCAACAGGAGCA 103762 || |||||||||| ||||||| |||||| || | |||||| ||||||||||| Sbjct 6162 AAGCTTCCTTGACCAATTGGGTAGATCAAGAAAACAACACTCGCAGCTGCAACAGGAGCT 6103 Query 103763 GAGTATGCGACACAGATCCAGGGGCGCATGCCCAGACGGTAGGACAATTCCCACTCACGT 103822 || ||||| ||| ||||| | ||||| |||||||| | | |||||||||||| Sbjct 6102 GAATATGCAACAACCATCCAAGTTCGCATACCCAGACGAAAACTAAGTTCCCACTCACGA 6043 Query 103823 CCCATATATGCATAGATGCCAATGAGGAAGTGGAATACTACAAGTTGGAAAGGACCACCG 103882 ||||| || | | |||| | |||||| | || | |||| |||||||||| Sbjct 6042 CCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCA 5983 Query 103883 TTATACAGCCACTCATCAAGAGATGCTGCTTCCCAAATGGGATAGAAGTGAAGACCAATT 103942 || || | ||| ||||||| ||||| ||||||||| || || || || || | ||| || Sbjct 5982 TTGTATAACCATTCATCAACAGATGTTGCTTCCCATATTGGGTAAAAATGCAAACCTATA 5923 Query 103943 GC 103944 || Sbjct 5922 GC 5921 >seq169634 Length=720 Score = 230 bits (254), Expect = 3e-55 Identities = 322/447 (72%), Gaps = 6/447 (1%) Strand=Plus/Plus Query 103687 AGGCATAGCATCGGAGAACGAACCTTGACCAAAGGGGTAGACCAAGAATACTGCGGACGC 103746 ||||||| |||| || || |||||||||| ||||||| |||||| || || | || Sbjct 7 AGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTTGC 66 Query 103747 AGCCGCAACAGGAGCAGAGTATGCGACACAGATCCAGGGGCGCATGCCCAGACGGTAGGA 103806 ||| ||||||| ||| || ||||| ||| ||||| || ||||| ||||||||| | Sbjct 67 AGCTGCAACAGAAGCTGAATATGCAACAACAATCCAAGGTCGCATACCCAGACGGAAACT 126 Query 103807 CAATTCCCACTCACGTCCCATATATGCATAGATGCCAATGAGGAAGTGGAATACTACAAG 103866 | |||||||||||| ||||| || | | |||| | |||||| | || | || Sbjct 127 AAGTTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAG 186 Query 103867 TTGGAAAGGACCACCGTTATACAGCCACTCATCAAGAGATGCTGCTTCCCAAATGGGATA 103926 || |||||||||| || || | ||| ||||||| |||||||||||||| || || || Sbjct 187 TTCATAAGGACCACCATTGTATAACCATTCATCAACGGATGCTGCTTCCCATATTGGGTA 246 Query 103927 GAAGTGAAGACCAATTGCGTTGGAGGAG--GGAACAACTGCACCAGAGATGATGTTGTTA 103984 || || | ||| || || || || || |||| || |||| || || || ||||| Sbjct 247 AAAATGCAAACCTATAGC--TGCAGAAGTAGGAATAATGACACCTGAAATAATATTGTTT 304 Query 103985 CCGTACATGAGTGAACCAGCGACGGGTTCACGAATGCCGTCGATATCGACGGGAGGTGCT 104044 || || | || || ||| || ||||||||||| || || ||||| || ||||| || Sbjct 305 CCATAACTTAGAGATCCATAAACAGGTTCACGAATACCATCAATATCCACTGGAGGAGCA 364 Query 104045 GCTACGAAAGCAACGATGAA-GCAGATGGTTGCCGCCAACAGAGTTGGGATCATCAGCAC 104103 || | |||||| | || || |||| ||||| | ||| | || |||||||||| || Sbjct 365 GCAATGAAAGCGATAATAAATACAGA-AGTTGCGGTCAATAAGGTAGGGATCATCAAAAC 423 Query 104104 ACCGAACCAACCAACATAGAGACGGTT 104130 ||| ||||| |||| || |||||||| Sbjct 424 ACCAAACCATCCAATGTAAAGACGGTT 450 >seq300680 Length=3790 Score = 179 bits (198), Expect = 5e-40 Identities = 223/303 (74%), Gaps = 2/303 (1%) Strand=Plus/Plus Query 103403 GAGTTGTTGAATGATGCGTATTGGAAGATCAAACGACCGAAGTAACCATGAGCGGCTACG 103462 ||||||||||| || || ||||||| ||| || || || |||||||||||||||||| Sbjct 369 GAGTTGTTGAAACTAGCATACTGGAAGACCAATCGGCCAAAATAACCATGAGCGGCTACG 428 Query 103463 ATGTTGTATG-TCTCTTCCTCTTGTCCGAACTTGTAACCATAGTTTTGAGATTCAGTTTC 103521 || || || | | ||||| ||||| ||||| |||||||| | || | ||||| |||| Sbjct 429 ATATTATAAGTTTTCTTCTTCTTGACCGAATTTGTAACCTTCATTAGCAAATTCATTTTC 488 Query 103522 AGTCGTCTCACGAACCAGCGAGGACGTAACAAGCGAACCGTGCATAGCACTGAACAGTGA 103581 | || || || | | | || || || | ||||| ||||||||| | || || || Sbjct 489 TCTGGTTTCCTGATTAAACTA-GAGGTTACCAAGGAACCATGCATAGCATTAAATAGGGA 547 Query 103582 ACCACCGAAGACTCCAGCAACGCCCAGCATGTGGAAGGGGTGCATGAGAATGTTATGTTC 103641 | ||| || ||||| |||| |||||||| || |||||||| |||||||| || || Sbjct 548 GCTGACGAGTACACCAGCTACGCTTAGCATGTGAAATGGGTGCATAAGAATGTTGTGCTC 607 Query 103642 GGCTTGGAAGACCAGCATGTAGTTGAAGGTTCCCGAAATACCCAAAGGCATAGCATCGGA 103701 | ||||| || | |||| ||||||| || || ||||| || | ||||||| |||| || Sbjct 608 AACCTGGAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGA 667 Query 103702 GAA 103704 || Sbjct 668 AAA 670 >seq8631 Length=609 Score = 132 bits (146), Expect = 6e-26 Identities = 122/152 (80%), Gaps = 2/152 (1%) Strand=Plus/Plus Query 103548 TAACAAGCGAACCGTGCATAGCACTGAA-CAGTGAACCACCGAAGACTCCAGCAACGCCC 103606 || |||| ||||| |||||||||||||| || || || ||||| || ||||| ||| | Sbjct 179 TACCAAG-GAACCATGCATAGCACTGAATTAGGGAGCCGCCGAATACACCAGCTACGTCT 237 Query 103607 AGCATGTGGAAGGGGTGCATGAGAATGTTATGTTCGGCTTGGAAGACCAGCATGTAGTTG 103666 |||||||| || |||||||| |||||||| || ||||| ||||| || | |||| ||||| Sbjct 238 AGCATGTGAAATGGGTGCATAAGAATGTTGTGCTCGGCCTGGAATACAATCATGAAGTTG 297 Query 103667 AAGGTTCCCGAAATACCCAAAGGCATAGCATC 103698 || || || ||||| || | ||||||| |||| Sbjct 298 AAAGTACCAGAAATTCCTAGAGGCATACCATC 329 Score = 86.0 bits (94), Expect = 8e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 103778 ATCCAGGGGCGCATGCCCAGACGGTAGGACAATTCCCACTCACGTCCCATATATGCATAG 103837 ||||| |||||||| |||||||| | | |||||||||||| ||||| || | Sbjct 343 ATCCAAGGGCGCATATCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAACAAGCT 402 Query 103838 ATGCCAATGAGGAAGTGGAATACTACAAGTTGGAAAGGACCACCGTTATACAGCCACTCA 103897 | |||| | |||||| | || | |||| |||||||||| || || | ||| ||| Sbjct 403 ACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCATTGTATAACCATTCA 462 Query 103898 TCAAGAGATGCTGCTTCCCAAATGGGATAGAAGTG 103932 |||| |||||||||||||| || || || || || Sbjct 463 TCAATGGATGCTGCTTCCCATATTGGGTAAAAATG 497 >seq250312 Length=8481 Score = 123 bits (136), Expect = 3e-23 Identities = 173/240 (72%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 103403 GAGTTGTTGAATGATGCGTATTGGAAGATCAAACGACCGAAGTAACCATGAGCGGCTACG 103462 ||||||||||| || | | |||||||||| ||||| || ||||||||||||||||| Sbjct 1812 GAGTTGTTGAAACTAGCATGTCGGAAGATCAATCGACCAAAATAACCATGAGCGGCTACA 1753 Query 103463 ATGTTGTATGTCTCTTCCTCTTGTCCGAACTTGTAACCATAGTTTTGAGATTCAGTTTCA 103522 || || || | ||| | ||||| ||||| | ||||| | || ||||| | | Sbjct 1752 ATATTCTAATTTTCTCCTTCTTGACCGAATATATAACCTTCATTAGCTTATTCATTCTTT 1693 Query 103523 GTCGTCTCAC-GAACCAGCGAGGACGTAACAAGCGAACCGTGCATAGCACTGAACAGTGA 103581 || || || | || | | | ||| || |||| ||||| ||||||||||||| || || Sbjct 1692 GTGGTTTCCCTGATCAAACTAGGGGTTACCAAG-GAACCACGCATAGCACTGAATAGGGA 1634 Query 103582 ACCACCGAAGACTCCAGCAACGCCCAGCATGTGGAAGGGGTGCATGAGAATGTTATGTTC 103641 | || | || ||||| ||||| |||||||| || | |||| | |||||||| || || Sbjct 1633 GCTGCCAATTACACCAGCTACGCCTAGCATGTGAAATGAGTGCCTAAGAATGTTGTGCTC 1574 >seq58055 Length=1185 Score = 102 bits (112), Expect = 1e-16 Identities = 131/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 102004 GACCAGAAACGGTTTGCTGTAACCATTGAATAAGTCTCTTCCTCTTGTGTGGAATCGAAT 102063 ||||| || || || || || |||||||||||||| ||||| |||| || | | || Sbjct 181 GACCAAAAGCGATTAGCAGTGACCATTGAATAAGTTTCTTCAGCTTGAGTTGGGTTAAAA 122 Query 102064 GCTTTGAAAGTGTTTGCTTGATCACCATCTTCATACAGAGTGTTCTCCACAGTGACACCG 102123 || ||| || ||||| ||||||||||||| | | ||| || || ||||| || | Sbjct 121 GCACAGAATGTATTTGCGCCATCACCATCTTCAAATAAAGTATTTTCTACAGTAGCATCA 62 Query 102124 TGGATTGCTGACAGCAGTGCTCCTCCCAGGATACCTGCAACACCCATCATATGGAATGGG 102183 || || || | |||| || | |||| | ||| ||||| ||||||||||| |||||| Sbjct 61 TGAATAGCGCATAGCAAAGCAGCACCCAATACACCGGCAACTCCCATCATATGAAATGGG 2 Query 102184 T 102184 | Sbjct 1 T 1 >seq292072 Length=5858 Score = 95.1 bits (104), Expect = 2e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 101944 ACAAAGAGCATAAAGAAATGCAACCACCTCTTATTACTAAATGCAATACCAAAGATTTGA 102003 ||||| | |||||||||||| ||||| | ||||| ||| |||| ||||||||||| Sbjct 1433 ACAAATAACATAAAGAAATGTAACCAACGTTTATTGAAAAAGGCAACCCCAAAGATTTGG 1492 Query 102004 GACCAGAAACGGTTTGCTGTAACCATTGAATAAGTCTCTTCCTCTTGTGT 102053 ||||| || || || || || |||||||||||||| ||||| |||| || Sbjct 1493 GACCAAAAGCGATTAGCAGTGACCATTGAATAAGTTTCTTCAGCTTGAGT 1542 >seq449122 Length=870 Score = 91.5 bits (100), Expect = 2e-13 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 103419 CGTATTGGAAGATCAAACGACCGAAGTAACCATGAGCGGCTACGATGTTGTATGTCTCTT 103478 |||||||||||||||| | || || |||||||||||||||||||| ||||| || |||| Sbjct 255 CGTATTGGAAGATCAATTGGCCAAAATAACCATGAGCGGCTACGATATTGTAAGTTTCTT 196 Query 103479 CCTCTTGTCCGAACTTGTAA 103498 | ||||| ||||| ||||| Sbjct 195 CTTCTTGACCGAATCTGTAA 176 >seq92275 Length=5108 Score = 87.8 bits (96), Expect = 2e-12 Identities = 118/162 (73%), Gaps = 2/162 (1%) Strand=Plus/Plus Query 103955 GGAACAACTGCACCAGAGATGATGTTGTTACCGTACATGAGTGAACCAGCGACGGGTTCA 104014 |||| || ||||| ||||| || || || |||| | || || |||| || |||||| Sbjct 4628 GGAATAATGGCACCCGAGATAATATTATTTTCGTAAAGTAGAGATCCAGAAACAGGTTCA 4687 Query 104015 CGAATGCCGTCGATATCGACGGGAGGTGCTGCTACGAAAGCAACGATGAA-GCAGATGGT 104073 ||||| || || ||||| || ||||| || | | ||| |||| || || |||| || Sbjct 4688 CGAATACCATCAATATCTACTGGAGGAGCATCAATGAAGGCAATAATAAATACAGA-AGT 4746 Query 104074 TGCCGCCAACAGAGTTGGGATCATCAGCACACCGAACCAACC 104115 ||| | ||| || || |||||||||| ||||| ||||| || Sbjct 4747 TGCGGTCAATAGGGTAGGGATCATCAAAACACCAAACCATCC 4788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629839965498480