Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq107965 297 6e-76 seq169634 199 1e-46 seq250312 152 1e-32 seq300680 149 2e-31 seq10884 116 1e-21 seq36621 114 4e-21 seq8631 104 7e-18 seq231965 100 8e-17 seq254652 87.8 5e-13 seq264332 82.4 2e-11 >seq107965 Length=6474 Score = 297 bits (328), Expect = 6e-76 Identities = 424/597 (71%), Gaps = 0/597 (0%) Strand=Plus/Minus Query 21695 ACGGGAATTATTAAAGCTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGC 21754 ||| || || || || ||||||||||||||||| | || |||||||| || ||| | || Sbjct 6466 ACGAGAGTTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAACGGC 6407 Query 21755 AACAATATTGTAAGTCTCTTCCTCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTC 21814 || ||||| ||||| || || ||| ||||||| ||||||| | || || | Sbjct 6406 TACGATATTATAAGTTTCATCTTCTAGACCAAATCTGTAACCTTCATTAGCAGATTTATT 6347 Query 21815 TTCAGTCGTCTCACGAATGAGTGACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAA 21874 ||| || || || | || | | || || |||| | ||| ||||||||| ||| | Sbjct 6346 TTCTGTGGTTTCCCTGATCAAACAAGAGGTTACCAAGGAACCATGCATAGCACTGAATAG 6287 Query 21875 ACTCCCACCAAATACGCCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTG 21934 || || | ||| || || ||||| ||||||||||| || ||||||||||| ||||| Sbjct 6286 GGAGCCGCCGATTACACCAGCTACACCTAGCATGTGAAATGGGTGCATAAGAATGTTGTG 6227 Query 21935 CTCAGCCTGGAACACCAGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATC 21994 |||||||||||| || | |||| ||||||| || || || || || | |||||| |||| Sbjct 6226 CTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATC 6167 Query 21995 AGAAAAAGAGCCCTGTCCAAACGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGG 22054 |||||| || || |||| || || | | ||| ||| || ||||||| || ||||| Sbjct 6166 AGAAAAGCTTCCTTGACCAATTGGGTAGATCAAGAAAACAACACTCGCAGCTGCAACAGG 6107 Query 22055 AGCAGAGTACGCAACAAAGATCCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTC 22114 ||| || || ||||||| ||||| | | ||| || || ||| | |||||||||||||| Sbjct 6106 AGCTGAATATGCAACAACCATCCAAGTTCGCATACCCAGACGAAAACTAAGTTCCCACTC 6047 Query 22115 TCGTCCCATGTAAGCAAAGACGCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACC 22174 || ||||||||| | || |||| | |||||| | || | |||| | ||||| Sbjct 6046 ACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACC 5987 Query 22175 GCCGTTGTACAGCCATTCATCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCC 22234 || ||||| | ||||||||||| | | |||||||| |||||||| || || | || Sbjct 5986 ACCATTGTATAACCATTCATCAACAGATGTTGCTTCCCATATTGGGTAAAAATGCAAACC 5927 Query 22235 GATGGCATTACTGCTCGGAACGACGGCTCCTGATATGATGTTGTTACCATACAACAG 22291 || || | | |||| | || ||| | || || ||||| ||||| | ||| Sbjct 5926 TATAGCTGCAGAAATAGGAATAATGGTACCTAAAATAATATTGTTTCCATAAAGCAG 5870 >seq169634 Length=720 Score = 199 bits (220), Expect = 1e-46 Identities = 312/444 (70%), Gaps = 2/444 (0%) Strand=Plus/Plus Query 21984 GGCATAGCATCAGAAAAAGAGCCCTGTCCAAACGGATAAACAAGGAACACAGCAGTCGCA 22043 |||||| |||||||||| || || |||| || || | | ||| |||||||| ||| Sbjct 8 GGCATACCATCAGAAAAGCTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTTGCA 67 Query 22044 GCGGCGACAGGAGCAGAGTACGCAACAAAGATCCAGGGCCTCATCCCTAGTCGATAGCTA 22103 || || |||| ||| || || ||||||| ||||| || | ||| || || || | ||| Sbjct 68 GCTGCAACAGAAGCTGAATATGCAACAACAATCCAAGGTCGCATACCCAGACGGAAACTA 127 Query 22104 AGTTCCCACTCTCGTCCCATGTAAGCAAAGACGCCAATGAGGAAGTGGAATACGGTGAGT 22163 ||||||||||| || ||||||||| | || |||| | |||||| | || | ||| Sbjct 128 AGTTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGT 187 Query 22164 TGGAATGGACCGCCGTTGTACAGCCATTCATCAAGTGTAGCAGCTTCCCAAATTGGGTAG 22223 | | ||||| || ||||| | ||||||||||| | || |||||||| |||||||| Sbjct 188 TCATAAGGACCACCATTGTATAACCATTCATCAACGGATGCTGCTTCCCATATTGGGTAA 247 Query 22224 AAGTGTAGTCCGATGGCATTACTGCTCGGAACGACGGCTCCTGATATGATGTTGTTACCA 22283 || || | || || || | | |||| | | | ||||| || || ||||| ||| Sbjct 248 AAATGCAAACCTATAGCTGCAGAAGTAGGAATAATGACACCTGAAATAATATTGTTTCCA 307 Query 22284 TACAACAGGGAGCCAGCGACGGGTTCTCGGATTCCATCGATGTCAACAGGTGGTGCGCCA 22343 || || || ||| || ||||| || || ||||| || || || || || || || Sbjct 308 TAACTTAGAGATCCATAAACAGGTTCACGAATACCATCAATATCCACTGGAGGAGCAGCA 367 Query 22344 ACAAAGGCGATAATAAAACAAGTTGTAGCGG-CAAGGAGGCACGGAATCATAAGGACTCC 22402 | || ||||||||||| || || |||| ||| ||| | || ||||| | || || Sbjct 368 ATGAAAGCGATAATAAATACAGAAGTTGCGGTCAATAAGGTA-GGGATCATCAAAACACC 426 Query 22403 GAACCATCCTACATAAAGACGGTT 22426 |||||||| | ||||||||||| Sbjct 427 AAACCATCCAATGTAAAGACGGTT 450 >seq250312 Length=8481 Score = 152 bits (168), Expect = 1e-32 Identities = 313/467 (67%), Gaps = 9/467 (2%) Strand=Plus/Minus Query 21476 GTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTGGCACG 21535 ||| || ||||| || || || || | |||| ||| || || | |||||||| |||| Sbjct 2026 GTCTAGAGGGAAATTATGAGCATTACATTCATACATAACTTCCATACCAAGGTTAGCACA 1967 Query 21536 GTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGATTGGTT 21595 ||||| || |||||||| || || || || || | | | | | | |||||| | Sbjct 1966 GTTAATGATATCAGCCCAAGTATTAATTACATGACATTGACTGTCGACTACAGATTGATG 1907 Query 21596 AAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAACCAAAT 21655 || | |||||||| | |||| ||||||| || | || | | || |||||| || Sbjct 1906 GAAACTAAAACCATTTAGGTTGTAAGCCATAGTGCTGATACCTAACACAATAAACCAGAT 1847 Query 21656 ACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAAAGCTAGC 21715 | ||||| | ||| || |||||||| | | ||| || || || || ||||| Sbjct 1846 A---------GGCCAAGTAGCTAGGAAGAAATGTAAAAAACGTGAGTTGTTGAAACTAGC 1796 Query 21716 ATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTCTCTTC 21775 || | ||||||| | ||||||||||| || ||||| || |||||||| ||| | ||| | Sbjct 1795 ATGTCGGAAGATCAATCGACCAAAATAACCATGAGCGGCTACAATATTCTAATTTTCTCC 1736 Query 21776 CTCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTCGTCTCACGAATGAG 21835 |||||||| || | ||||| | || | | | | | || || || | || | Sbjct 1735 TTCTTGACCGAATATATAACCTTCATTAGCTTATTCATTCTTTGTGGTTTCCCTGATCAA 1676 Query 21836 TGACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAATACGCCGGC 21895 | || |||| | ||| |||||||| ||| | | |||| ||| || || Sbjct 1675 ACTAGGGGTTACCAAGGAACCACGCATAGCACTGAATAGGGAGCTGCCAATTACACCAGC 1616 Query 21896 CACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCT 21942 || || ||||||||||| | ||| ||||||| ||||||||| ||| Sbjct 1615 TACGCCTAGCATGTGAAATGAGTGCCTAAGAATGTTGTGCTCAACCT 1569 >seq300680 Length=3790 Score = 149 bits (164), Expect = 2e-31 Identities = 226/319 (71%), Gaps = 2/319 (1%) Strand=Plus/Plus Query 21683 GAAATGAAGACTACGGGAATTATTAAAGCTAGCATATTGGAAGATAAGCCGACCAAAATA 21742 |||||| | | ||| || || || || |||||||| ||||||| | || |||||||| Sbjct 353 GAAATGTAAAGAACGAGAGTTGTTGAAACTAGCATACTGGAAGACCAATCGGCCAAAATA 412 Query 21743 GCCGTGAGCAGCAACAATATTGTAAGTCT-CTTCCTCTTGACCAAACTTGTAACCATAGT 21801 || ||||| || || ||||| ||||| | |||| |||||||| || |||||||| | | Sbjct 413 ACCATGAGCGGCTACGATATTATAAGTTTTCTTCTTCTTGACCGAATTTGTAACCTTCAT 472 Query 21802 TCTGTGAAACCTCTTCAGTCGTCTCACGAATGAGTGACGACGTGACCAGGCTACCGTGCA 21861 | | | | ||| | || || || | | | || || |||| | ||| |||| Sbjct 473 TAGCAAATTCATTTTCTCTGGTTTCCTGATTAAACTA-GAGGTTACCAAGGAACCATGCA 531 Query 21862 TAGCAGAGAACAAACTCCCACCAAATACGCCGGCCACACCCAGCATGTGAAAAGGATGCA 21921 ||||| || | | | | ||| || || || | ||||||||||| || |||| Sbjct 532 TAGCATTAAATAGGGAGCTGACGAGTACACCAGCTACGCTTAGCATGTGAAATGGGTGCA 591 Query 21922 TAAGAATATTGTGCTCAGCCTGGAACACCAGCATGTAGTTGAAGGTGCCGGATATCCCCA 21981 ||||||| ||||||||| ||||||| || | |||| ||||||| || || || || || | Sbjct 592 TAAGAATGTTGTGCTCAACCTGGAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTA 651 Query 21982 AGGGCATAGCATCAGAAAA 22000 |||||| |||||||||| Sbjct 652 GAGGCATACCATCAGAAAA 670 >seq10884 Length=5042 Score = 116 bits (128), Expect = 1e-21 Identities = 99/122 (81%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 21879 CCACCAAATACGCCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCA 21938 || || ||||| || || || || ||||||||||| || ||||||||||| ||||||||| Sbjct 3910 CCGCCGAATACACCAGCTACGCCTAGCATGTGAAATGGGTGCATAAGAATGTTGTGCTCA 3851 Query 21939 GCCTGGAACACCAGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAA 21998 |||||||| || | |||| ||||||| || || || || || | |||||| |||||||| Sbjct 3850 GCCTGGAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAA 3791 Query 21999 AA 22000 || Sbjct 3790 AA 3789 >seq36621 Length=13842 Score = 114 bits (126), Expect = 4e-21 Identities = 215/308 (70%), Gaps = 15/308 (5%) Strand=Plus/Plus Query 21476 GTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTGGCACG 21535 ||| || ||| | || || || || || |||||||| || | | ||||||| ||| | Sbjct 7670 GTCTAGAGGGGAATTATGAGCATTACGTTCATGCATAACATTCATAACAAGGTTAGCATG 7729 Query 21536 GTTAAGAATGTCAGCCCAGGTGTTGATCAC----CTGTCCATCAGCAGCTAGCAGAGATT 21591 |||| || ||| | || || || || || |||| | | || ||| || ||| Sbjct 7730 GTTACTGATATCACCTCAAGTATTCATTACACGGCTGTGACT-ATCAACTACCA---ATT 7785 Query 21592 GGTTAAAGTTGAAACCATTCAAGTTGAAAGCC---ATGGTAGACACGCCAAGCGCAGCAA 21648 |||| || ||||||| | |||||||||| ||| ||| || |||| ||||| | Sbjct 7786 GGTTTCGATTTCAACCATTTAGGTTGAAAGCCATAATGCTAG-TAC-CCAA-CGCAGTGA 7842 Query 21649 ACCAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAA 21708 |||| ||||| | ||||||||| ||||| ||||| |||| | | | | || | || | Sbjct 7843 ACCATATACCAAAAACAGGCCAAGCAGCTAGAAAAAAATATATAAAATGAGAGTCGTTGA 7902 Query 21709 AGCTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAG 21768 | |||||||||| |||||| | | | | ||||| || |||||| || ||||| |||| Sbjct 7903 AACTAGCATATTAGAAGATCAATC-AGCCAAATAACCATGAGCATATACGATATTATAAG 7961 Query 21769 TCTCTTCC 21776 | |||||| Sbjct 7962 TTTCTTCC 7969 >seq8631 Length=609 Score = 104 bits (114), Expect = 7e-18 Identities = 121/162 (75%), Gaps = 1/162 (1%) Strand=Plus/Plus Query 21840 GACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTC-CCACCAAATACGCCGGCCAC 21898 || || |||| | ||| ||||||||| ||| | || || ||||| || || || Sbjct 174 GAGGTTACCAAGGAACCATGCATAGCACTGAATTAGGGAGCCGCCGAATACACCAGCTAC 233 Query 21899 ACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACCAGCATGTA 21958 | ||||||||||| || ||||||||||| |||||||| |||||||| || | |||| | Sbjct 234 GTCTAGCATGTGAAATGGGTGCATAAGAATGTTGTGCTCGGCCTGGAATACAATCATGAA 293 Query 21959 GTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAA 22000 |||||| || || || || || | |||||| ||||| |||| Sbjct 294 GTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAAAAAA 335 Score = 86.0 bits (94), Expect = 2e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 22074 ATCCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAAGCAAAG 22133 ||||| || | ||| | || || | |||||||||||||| || ||||||||| | Sbjct 343 ATCCAAGGGCGCATATCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAACAAGCT 402 Query 22134 ACGCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGTTGTACAGCCATTCA 22193 || |||| | |||||| | || | |||| | ||||| || ||||| | ||||||| Sbjct 403 ACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCATTGTATAACCATTCA 462 Query 22194 TCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTG 22228 |||| | || |||||||| |||||||| || || Sbjct 463 TCAATGGATGCTGCTTCCCATATTGGGTAAAAATG 497 >seq231965 Length=7494 Score = 100 bits (110), Expect = 8e-17 Identities = 139/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 21887 TACGCCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAA 21946 ||| ||| | || || ||||||| ||| || ||||||||||| ||||||||| ||| || Sbjct 6776 TACACCGTCTACGCCTAGCATGTAAAATGGGTGCATAAGAATGTTGTGCTCAACCTTAAA 6717 Query 21947 CACCAGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCC 22006 || | |||| ||||||| || || | || || | || ||| ||| |||||| | Sbjct 6716 TACAATCATGAAGTTGAAAGTACCATAAATTCCTAGAGGAATACCATGAGAAAAGCTTCA 6657 Query 22007 CTGTCCAAACGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGC 22066 || | || || || | | ||| ||| ||||||||| || ||| |||| | || || Sbjct 6656 TTGACAAATTGGGTAGATCAAGAAAACATCAGTCGCAGTTGCAACAAGAGCTGGATATGC 6597 Query 22067 AACAAAGATCCAGGG 22081 ||||| ||||| || Sbjct 6596 AACAATAATCCAAGG 6582 >seq254652 Length=6058 Score = 87.8 bits (96), Expect = 5e-13 Identities = 170/250 (68%), Gaps = 1/250 (0%) Strand=Plus/Minus Query 22037 AGTCGCAGCGGCGACAGGAGCAGAGTACGCAACAAAGATCCAGGGCCTCATCCCTAGTCG 22096 ||||||||| | | |||||| || || ||||||| ||| | || | || || || || Sbjct 960 AGTCGCAGCTGTAATAGGAGCTGAATATGCAACAACAATCAAAGGTCGCACACCCAGACG 901 Query 22097 ATAGCTAAGTTCCCACTCTCGTCCCATGTAAGCAAAGACGCCAATGAGGAAGTGGAATAC 22156 | |||||||||||||| || ||||||||| || |||| | |||||| | ||| Sbjct 900 GAAACTAAGTTCCCACTCGCGACCCATGTAACACGCTACACCAAGTAAGAAGTGTAGTAC 841 Query 22157 GGTGAGTTGGAATGGACCGCCGTTGTA-CAGCCATTCATCAAGTGTAGCAGCTTCCCAAA 22215 | |||| | ||||| || ||||| | ||||||||||| | |||||| | | Sbjct 840 AATTAGTTCATAAGGACCACCATTGTATAAACCATTCATCAACAAATGTTGCTTCCTATA 781 Query 22216 TTGGGTAGAAGTGTAGTCCGATGGCATTACTGCTCGGAACGACGGCTCCTGATATGATGT 22275 || |||| || || | || | || || | |||| || | ||||| || || | Sbjct 780 TTAGGTAAAAATGCAAACCTGTAGCTGTAGAAGTAGGAATAACAACACCTGAAATAATAT 721 Query 22276 TGTTACCATA 22285 |||| ||||| Sbjct 720 TGTTTCCATA 711 >seq264332 Length=996 Score = 82.4 bits (90), Expect = 2e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 21641 CGCAGCAAACCAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGA 21700 ||||| ||||| || ||||| |||||||| ||||| || |||||||| | | ||| || Sbjct 177 CGCAGTGAACCAGATGCCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGA 236 Query 21701 ATTATTAAAGCTAGCATATTGGAAGATAAGCCGACCAA 21738 || || || ||||||||||||||||| | || |||| Sbjct 237 GTTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAA 274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145402557124680