Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27]
463,906 sequences; 661,937,708 total letters
Query= NC_020838.1
Length=45728
Score E
Sequences producing significant alignments: (Bits) Value
seq107965 297 6e-76
seq169634 199 1e-46
seq250312 152 1e-32
seq300680 149 2e-31
seq10884 116 1e-21
seq36621 114 4e-21
seq8631 104 7e-18
seq231965 100 8e-17
seq254652 87.8 5e-13
seq264332 82.4 2e-11
>seq107965
Length=6474
Score = 297 bits (328), Expect = 6e-76
Identities = 424/597 (71%), Gaps = 0/597 (0%)
Strand=Plus/Minus
Query 21695 ACGGGAATTATTAAAGCTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGC 21754
||| || || || || ||||||||||||||||| | || |||||||| || ||| | ||
Sbjct 6466 ACGAGAGTTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAACGGC 6407
Query 21755 AACAATATTGTAAGTCTCTTCCTCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTC 21814
|| ||||| ||||| || || ||| ||||||| ||||||| | || || |
Sbjct 6406 TACGATATTATAAGTTTCATCTTCTAGACCAAATCTGTAACCTTCATTAGCAGATTTATT 6347
Query 21815 TTCAGTCGTCTCACGAATGAGTGACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAA 21874
||| || || || | || | | || || |||| | ||| ||||||||| ||| |
Sbjct 6346 TTCTGTGGTTTCCCTGATCAAACAAGAGGTTACCAAGGAACCATGCATAGCACTGAATAG 6287
Query 21875 ACTCCCACCAAATACGCCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTG 21934
|| || | ||| || || ||||| ||||||||||| || ||||||||||| |||||
Sbjct 6286 GGAGCCGCCGATTACACCAGCTACACCTAGCATGTGAAATGGGTGCATAAGAATGTTGTG 6227
Query 21935 CTCAGCCTGGAACACCAGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATC 21994
|||||||||||| || | |||| ||||||| || || || || || | |||||| ||||
Sbjct 6226 CTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATC 6167
Query 21995 AGAAAAAGAGCCCTGTCCAAACGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGG 22054
|||||| || || |||| || || | | ||| ||| || ||||||| || |||||
Sbjct 6166 AGAAAAGCTTCCTTGACCAATTGGGTAGATCAAGAAAACAACACTCGCAGCTGCAACAGG 6107
Query 22055 AGCAGAGTACGCAACAAAGATCCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTC 22114
||| || || ||||||| ||||| | | ||| || || ||| | ||||||||||||||
Sbjct 6106 AGCTGAATATGCAACAACCATCCAAGTTCGCATACCCAGACGAAAACTAAGTTCCCACTC 6047
Query 22115 TCGTCCCATGTAAGCAAAGACGCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACC 22174
|| ||||||||| | || |||| | |||||| | || | |||| | |||||
Sbjct 6046 ACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACC 5987
Query 22175 GCCGTTGTACAGCCATTCATCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCC 22234
|| ||||| | ||||||||||| | | |||||||| |||||||| || || | ||
Sbjct 5986 ACCATTGTATAACCATTCATCAACAGATGTTGCTTCCCATATTGGGTAAAAATGCAAACC 5927
Query 22235 GATGGCATTACTGCTCGGAACGACGGCTCCTGATATGATGTTGTTACCATACAACAG 22291
|| || | | |||| | || ||| | || || ||||| ||||| | |||
Sbjct 5926 TATAGCTGCAGAAATAGGAATAATGGTACCTAAAATAATATTGTTTCCATAAAGCAG 5870
>seq169634
Length=720
Score = 199 bits (220), Expect = 1e-46
Identities = 312/444 (70%), Gaps = 2/444 (0%)
Strand=Plus/Plus
Query 21984 GGCATAGCATCAGAAAAAGAGCCCTGTCCAAACGGATAAACAAGGAACACAGCAGTCGCA 22043
|||||| |||||||||| || || |||| || || | | ||| |||||||| |||
Sbjct 8 GGCATACCATCAGAAAAGCTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTTGCA 67
Query 22044 GCGGCGACAGGAGCAGAGTACGCAACAAAGATCCAGGGCCTCATCCCTAGTCGATAGCTA 22103
|| || |||| ||| || || ||||||| ||||| || | ||| || || || | |||
Sbjct 68 GCTGCAACAGAAGCTGAATATGCAACAACAATCCAAGGTCGCATACCCAGACGGAAACTA 127
Query 22104 AGTTCCCACTCTCGTCCCATGTAAGCAAAGACGCCAATGAGGAAGTGGAATACGGTGAGT 22163
||||||||||| || ||||||||| | || |||| | |||||| | || | |||
Sbjct 128 AGTTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGT 187
Query 22164 TGGAATGGACCGCCGTTGTACAGCCATTCATCAAGTGTAGCAGCTTCCCAAATTGGGTAG 22223
| | ||||| || ||||| | ||||||||||| | || |||||||| ||||||||
Sbjct 188 TCATAAGGACCACCATTGTATAACCATTCATCAACGGATGCTGCTTCCCATATTGGGTAA 247
Query 22224 AAGTGTAGTCCGATGGCATTACTGCTCGGAACGACGGCTCCTGATATGATGTTGTTACCA 22283
|| || | || || || | | |||| | | | ||||| || || ||||| |||
Sbjct 248 AAATGCAAACCTATAGCTGCAGAAGTAGGAATAATGACACCTGAAATAATATTGTTTCCA 307
Query 22284 TACAACAGGGAGCCAGCGACGGGTTCTCGGATTCCATCGATGTCAACAGGTGGTGCGCCA 22343
|| || || ||| || ||||| || || ||||| || || || || || || ||
Sbjct 308 TAACTTAGAGATCCATAAACAGGTTCACGAATACCATCAATATCCACTGGAGGAGCAGCA 367
Query 22344 ACAAAGGCGATAATAAAACAAGTTGTAGCGG-CAAGGAGGCACGGAATCATAAGGACTCC 22402
| || ||||||||||| || || |||| ||| ||| | || ||||| | || ||
Sbjct 368 ATGAAAGCGATAATAAATACAGAAGTTGCGGTCAATAAGGTA-GGGATCATCAAAACACC 426
Query 22403 GAACCATCCTACATAAAGACGGTT 22426
|||||||| | |||||||||||
Sbjct 427 AAACCATCCAATGTAAAGACGGTT 450
>seq250312
Length=8481
Score = 152 bits (168), Expect = 1e-32
Identities = 313/467 (67%), Gaps = 9/467 (2%)
Strand=Plus/Minus
Query 21476 GTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTGGCACG 21535
||| || ||||| || || || || | |||| ||| || || | |||||||| ||||
Sbjct 2026 GTCTAGAGGGAAATTATGAGCATTACATTCATACATAACTTCCATACCAAGGTTAGCACA 1967
Query 21536 GTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGATTGGTT 21595
||||| || |||||||| || || || || || | | | | | | |||||| |
Sbjct 1966 GTTAATGATATCAGCCCAAGTATTAATTACATGACATTGACTGTCGACTACAGATTGATG 1907
Query 21596 AAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAACCAAAT 21655
|| | |||||||| | |||| ||||||| || | || | | || |||||| ||
Sbjct 1906 GAAACTAAAACCATTTAGGTTGTAAGCCATAGTGCTGATACCTAACACAATAAACCAGAT 1847
Query 21656 ACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAAAGCTAGC 21715
| ||||| | ||| || |||||||| | | ||| || || || || |||||
Sbjct 1846 A---------GGCCAAGTAGCTAGGAAGAAATGTAAAAAACGTGAGTTGTTGAAACTAGC 1796
Query 21716 ATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTCTCTTC 21775
|| | ||||||| | ||||||||||| || ||||| || |||||||| ||| | ||| |
Sbjct 1795 ATGTCGGAAGATCAATCGACCAAAATAACCATGAGCGGCTACAATATTCTAATTTTCTCC 1736
Query 21776 CTCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTCGTCTCACGAATGAG 21835
|||||||| || | ||||| | || | | | | | || || || | || |
Sbjct 1735 TTCTTGACCGAATATATAACCTTCATTAGCTTATTCATTCTTTGTGGTTTCCCTGATCAA 1676
Query 21836 TGACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAATACGCCGGC 21895
| || |||| | ||| |||||||| ||| | | |||| ||| || ||
Sbjct 1675 ACTAGGGGTTACCAAGGAACCACGCATAGCACTGAATAGGGAGCTGCCAATTACACCAGC 1616
Query 21896 CACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCT 21942
|| || ||||||||||| | ||| ||||||| ||||||||| |||
Sbjct 1615 TACGCCTAGCATGTGAAATGAGTGCCTAAGAATGTTGTGCTCAACCT 1569
>seq300680
Length=3790
Score = 149 bits (164), Expect = 2e-31
Identities = 226/319 (71%), Gaps = 2/319 (1%)
Strand=Plus/Plus
Query 21683 GAAATGAAGACTACGGGAATTATTAAAGCTAGCATATTGGAAGATAAGCCGACCAAAATA 21742
|||||| | | ||| || || || || |||||||| ||||||| | || ||||||||
Sbjct 353 GAAATGTAAAGAACGAGAGTTGTTGAAACTAGCATACTGGAAGACCAATCGGCCAAAATA 412
Query 21743 GCCGTGAGCAGCAACAATATTGTAAGTCT-CTTCCTCTTGACCAAACTTGTAACCATAGT 21801
|| ||||| || || ||||| ||||| | |||| |||||||| || |||||||| | |
Sbjct 413 ACCATGAGCGGCTACGATATTATAAGTTTTCTTCTTCTTGACCGAATTTGTAACCTTCAT 472
Query 21802 TCTGTGAAACCTCTTCAGTCGTCTCACGAATGAGTGACGACGTGACCAGGCTACCGTGCA 21861
| | | | ||| | || || || | | | || || |||| | ||| ||||
Sbjct 473 TAGCAAATTCATTTTCTCTGGTTTCCTGATTAAACTA-GAGGTTACCAAGGAACCATGCA 531
Query 21862 TAGCAGAGAACAAACTCCCACCAAATACGCCGGCCACACCCAGCATGTGAAAAGGATGCA 21921
||||| || | | | | ||| || || || | ||||||||||| || ||||
Sbjct 532 TAGCATTAAATAGGGAGCTGACGAGTACACCAGCTACGCTTAGCATGTGAAATGGGTGCA 591
Query 21922 TAAGAATATTGTGCTCAGCCTGGAACACCAGCATGTAGTTGAAGGTGCCGGATATCCCCA 21981
||||||| ||||||||| ||||||| || | |||| ||||||| || || || || || |
Sbjct 592 TAAGAATGTTGTGCTCAACCTGGAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTA 651
Query 21982 AGGGCATAGCATCAGAAAA 22000
|||||| ||||||||||
Sbjct 652 GAGGCATACCATCAGAAAA 670
>seq10884
Length=5042
Score = 116 bits (128), Expect = 1e-21
Identities = 99/122 (81%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 21879 CCACCAAATACGCCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCA 21938
|| || ||||| || || || || ||||||||||| || ||||||||||| |||||||||
Sbjct 3910 CCGCCGAATACACCAGCTACGCCTAGCATGTGAAATGGGTGCATAAGAATGTTGTGCTCA 3851
Query 21939 GCCTGGAACACCAGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAA 21998
|||||||| || | |||| ||||||| || || || || || | |||||| ||||||||
Sbjct 3850 GCCTGGAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAA 3791
Query 21999 AA 22000
||
Sbjct 3790 AA 3789
>seq36621
Length=13842
Score = 114 bits (126), Expect = 4e-21
Identities = 215/308 (70%), Gaps = 15/308 (5%)
Strand=Plus/Plus
Query 21476 GTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTGGCACG 21535
||| || ||| | || || || || || |||||||| || | | ||||||| ||| |
Sbjct 7670 GTCTAGAGGGGAATTATGAGCATTACGTTCATGCATAACATTCATAACAAGGTTAGCATG 7729
Query 21536 GTTAAGAATGTCAGCCCAGGTGTTGATCAC----CTGTCCATCAGCAGCTAGCAGAGATT 21591
|||| || ||| | || || || || || |||| | | || ||| || |||
Sbjct 7730 GTTACTGATATCACCTCAAGTATTCATTACACGGCTGTGACT-ATCAACTACCA---ATT 7785
Query 21592 GGTTAAAGTTGAAACCATTCAAGTTGAAAGCC---ATGGTAGACACGCCAAGCGCAGCAA 21648
|||| || ||||||| | |||||||||| ||| ||| || |||| ||||| |
Sbjct 7786 GGTTTCGATTTCAACCATTTAGGTTGAAAGCCATAATGCTAG-TAC-CCAA-CGCAGTGA 7842
Query 21649 ACCAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAA 21708
|||| ||||| | ||||||||| ||||| ||||| |||| | | | | || | || |
Sbjct 7843 ACCATATACCAAAAACAGGCCAAGCAGCTAGAAAAAAATATATAAAATGAGAGTCGTTGA 7902
Query 21709 AGCTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAG 21768
| |||||||||| |||||| | | | | ||||| || |||||| || ||||| ||||
Sbjct 7903 AACTAGCATATTAGAAGATCAATC-AGCCAAATAACCATGAGCATATACGATATTATAAG 7961
Query 21769 TCTCTTCC 21776
| ||||||
Sbjct 7962 TTTCTTCC 7969
>seq8631
Length=609
Score = 104 bits (114), Expect = 7e-18
Identities = 121/162 (75%), Gaps = 1/162 (1%)
Strand=Plus/Plus
Query 21840 GACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTC-CCACCAAATACGCCGGCCAC 21898
|| || |||| | ||| ||||||||| ||| | || || ||||| || || ||
Sbjct 174 GAGGTTACCAAGGAACCATGCATAGCACTGAATTAGGGAGCCGCCGAATACACCAGCTAC 233
Query 21899 ACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACCAGCATGTA 21958
| ||||||||||| || ||||||||||| |||||||| |||||||| || | |||| |
Sbjct 234 GTCTAGCATGTGAAATGGGTGCATAAGAATGTTGTGCTCGGCCTGGAATACAATCATGAA 293
Query 21959 GTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAA 22000
|||||| || || || || || | |||||| ||||| ||||
Sbjct 294 GTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAAAAAA 335
Score = 86.0 bits (94), Expect = 2e-12
Identities = 112/155 (72%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 22074 ATCCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAAGCAAAG 22133
||||| || | ||| | || || | |||||||||||||| || ||||||||| |
Sbjct 343 ATCCAAGGGCGCATATCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAACAAGCT 402
Query 22134 ACGCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGTTGTACAGCCATTCA 22193
|| |||| | |||||| | || | |||| | ||||| || ||||| | |||||||
Sbjct 403 ACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCATTGTATAACCATTCA 462
Query 22194 TCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTG 22228
|||| | || |||||||| |||||||| || ||
Sbjct 463 TCAATGGATGCTGCTTCCCATATTGGGTAAAAATG 497
>seq231965
Length=7494
Score = 100 bits (110), Expect = 8e-17
Identities = 139/195 (71%), Gaps = 0/195 (0%)
Strand=Plus/Minus
Query 21887 TACGCCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAA 21946
||| ||| | || || ||||||| ||| || ||||||||||| ||||||||| ||| ||
Sbjct 6776 TACACCGTCTACGCCTAGCATGTAAAATGGGTGCATAAGAATGTTGTGCTCAACCTTAAA 6717
Query 21947 CACCAGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCC 22006
|| | |||| ||||||| || || | || || | || ||| ||| |||||| |
Sbjct 6716 TACAATCATGAAGTTGAAAGTACCATAAATTCCTAGAGGAATACCATGAGAAAAGCTTCA 6657
Query 22007 CTGTCCAAACGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGC 22066
|| | || || || | | ||| ||| ||||||||| || ||| |||| | || ||
Sbjct 6656 TTGACAAATTGGGTAGATCAAGAAAACATCAGTCGCAGTTGCAACAAGAGCTGGATATGC 6597
Query 22067 AACAAAGATCCAGGG 22081
||||| ||||| ||
Sbjct 6596 AACAATAATCCAAGG 6582
>seq254652
Length=6058
Score = 87.8 bits (96), Expect = 5e-13
Identities = 170/250 (68%), Gaps = 1/250 (0%)
Strand=Plus/Minus
Query 22037 AGTCGCAGCGGCGACAGGAGCAGAGTACGCAACAAAGATCCAGGGCCTCATCCCTAGTCG 22096
||||||||| | | |||||| || || ||||||| ||| | || | || || || ||
Sbjct 960 AGTCGCAGCTGTAATAGGAGCTGAATATGCAACAACAATCAAAGGTCGCACACCCAGACG 901
Query 22097 ATAGCTAAGTTCCCACTCTCGTCCCATGTAAGCAAAGACGCCAATGAGGAAGTGGAATAC 22156
| |||||||||||||| || ||||||||| || |||| | |||||| | |||
Sbjct 900 GAAACTAAGTTCCCACTCGCGACCCATGTAACACGCTACACCAAGTAAGAAGTGTAGTAC 841
Query 22157 GGTGAGTTGGAATGGACCGCCGTTGTA-CAGCCATTCATCAAGTGTAGCAGCTTCCCAAA 22215
| |||| | ||||| || ||||| | ||||||||||| | |||||| | |
Sbjct 840 AATTAGTTCATAAGGACCACCATTGTATAAACCATTCATCAACAAATGTTGCTTCCTATA 781
Query 22216 TTGGGTAGAAGTGTAGTCCGATGGCATTACTGCTCGGAACGACGGCTCCTGATATGATGT 22275
|| |||| || || | || | || || | |||| || | ||||| || || |
Sbjct 780 TTAGGTAAAAATGCAAACCTGTAGCTGTAGAAGTAGGAATAACAACACCTGAAATAATAT 721
Query 22276 TGTTACCATA 22285
|||| |||||
Sbjct 720 TGTTTCCATA 711
>seq264332
Length=996
Score = 82.4 bits (90), Expect = 2e-11
Identities = 77/98 (79%), Gaps = 0/98 (0%)
Strand=Plus/Plus
Query 21641 CGCAGCAAACCAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGA 21700
||||| ||||| || ||||| |||||||| ||||| || |||||||| | | ||| ||
Sbjct 177 CGCAGTGAACCAGATGCCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGA 236
Query 21701 ATTATTAAAGCTAGCATATTGGAAGATAAGCCGACCAA 21738
|| || || ||||||||||||||||| | || ||||
Sbjct 237 GTTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAA 274
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 145402557124680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |