Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27]
463,906 sequences; 661,937,708 total letters
Query= NC_020845.1
Length=180977
Score E
Sequences producing significant alignments: (Bits) Value
seq107965 302 5e-77
seq169634 201 1e-46
seq300680 174 2e-38
seq250312 161 1e-34
seq301434 131 2e-25
seq10884 120 3e-22
seq8631 111 2e-19
seq254652 95.1 1e-14
seq33322 91.5 2e-13
seq231965 86.0 7e-12
seq35354 86.0 7e-12
>seq107965
Length=6474
Score = 302 bits (334), Expect = 5e-77
Identities = 392/542 (72%), Gaps = 0/542 (0%)
Strand=Plus/Minus
Query 124277 GAGTTGTTGAATGAAGCATACTGGAAGATAAGACGACCAAAGTAACCGTGTGCTGCTACT 124336
||||||||||| |||||| |||||||| | || ||||| ||||| || | |||||
Sbjct 6462 GAGTTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAACGGCTACG 6403
Query 124337 ATGTTGTATGTTTCTTCTTCTTGTCCGAACTTATAACCATAGTTCTGTGACTCTTGCTCT 124396
|| || || ||||| |||||| | || || | ||||| | || || | | |||
Sbjct 6402 ATATTATAAGTTTCATCTTCTAGACCAAATCTGTAACCTTCATTAGCAGATTTATTTTCT 6343
Query 124397 GTTGTTTCTCTGATTAGAGAAGATGTAACAAGAGAACCATGCATTGCTGAGAATAAAGAT 124456
|| ||||| ||||| | | |||| || || | ||||||||||| || ||||| ||
Sbjct 6342 GTGGTTTCCCTGATCAAACAAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAG 6283
Query 124457 CCTCCGAACATTCCTGCTACTCCTGCCATGTGGAAAGGATGCATTAGAATGTTATGCTCT 124516
|| |||| | || ||||| ||| |||||| || || ||||| |||||||| |||||
Sbjct 6282 CCGCCGATTACACCAGCTACACCTAGCATGTGAAATGGGTGCATAAGAATGTTGTGCTCA 6223
Query 124517 GCTTGGAAAACGAACATAAAGTTGAAAGTACCTGAGATACCAAGTGGCATACCATCAGAG 124576
|| ||||| || | ||| |||||||||||||| || || || || ||||||||||||||
Sbjct 6222 GCCTGGAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAA 6163
Query 124577 AATGAACCCTGACCAAATGGGTATACTAAGAATACAGCGAATGCAGCAGATACTGGTGCT 124636
|| || ||||||| |||||| | ||||| ||| | ||||| | || || |||
Sbjct 6162 AAGCTTCCTTGACCAATTGGGTAGATCAAGAAAACAACACTCGCAGCTGCAACAGGAGCT 6103
Query 124637 GAATAAGCAACACAGATCCAAGGACGCATTCCTAATCTGTATGATAGTTCCCACTGTCTT 124696
||||| |||||| ||||||| ||||| || | | | |||||||||| |
Sbjct 6102 GAATATGCAACAACCATCCAAGTTCGCATACCCAGACGAAAACTAAGTTCCCACTCACGA 6043
Query 124697 CCCATGTATGCTGAAATACCAATAAGGAAGTGGAAAATTACCAACTGATAAGGACCACCA 124756
|||||||| | | ||||| | |||||| | || | | | |||||||||||||
Sbjct 6042 CCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCA 5983
Query 124757 TTATACAACCATTCATCAACAGTTGCTGCTTCCCAGATTGGGTAGAAGTGTAGTCCGATA 124816
|| || |||||||||||||||| || ||||||||| |||||||| || || | || |||
Sbjct 5982 TTGTATAACCATTCATCAACAGATGTTGCTTCCCATATTGGGTAAAAATGCAAACCTATA 5923
Query 124817 GC 124818
||
Sbjct 5922 GC 5921
>seq169634
Length=720
Score = 201 bits (222), Expect = 1e-46
Identities = 312/443 (70%), Gaps = 2/443 (0%)
Strand=Plus/Plus
Query 124556 CCAAGTGGCATACCATCAGAGAATGAACCCTGACCAAATGGGTATACTAAGAATACAGCG 124615
|| || |||||||||||||| || || ||||||| |||||| | ||||| |||||
Sbjct 2 CCTAGAGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCA 61
Query 124616 AATGCAGCAGATACTGGTGCTGAATAAGCAACACAGATCCAAGGACGCATTCCTAATCTG 124675
|||||| | || | |||||||| |||||| |||||||| ||||| || | | |
Sbjct 62 GTTGCAGCTGCAACAGAAGCTGAATATGCAACAACAATCCAAGGTCGCATACCCAGACGG 121
Query 124676 TATGATAGTTCCCACTGTCTTCCCATGTATGCTGAAATACCAATAAGGAAGTGGAAAATT 124735
| |||||||||| | |||||||| | | ||||| | |||||| | ||
Sbjct 122 AAACTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACA 181
Query 124736 ACCAACTGATAAGGACCACCATTATACAACCATTCATCAACAGTTGCTGCTTCCCAGATT 124795
| | | ||||||||||||||| || |||||||||||||| | |||||||||||| |||
Sbjct 182 ATTAGTTCATAAGGACCACCATTGTATAACCATTCATCAACGGATGCTGCTTCCCATATT 241
Query 124796 GGGTAGAAGTGTAGTCCGATAGCGTTTGATGATGGAACAACTGCACCAGAGATGATGTTG 124855
||||| || || | || ||||| || | |||| || |||| || || || |||
Sbjct 242 GGGTAAAAATGCAAACCTATAGCTGCAGAAGTAGGAATAATGACACCTGAAATAATATTG 301
Query 124856 TTACCATATAAGAAAGAACCCGCTACTGGTTCTCTGATTCCGTCGATATCGACAGGAGGT 124915
|| ||||| | ||| || || ||||| | || || || ||||| || |||||
Sbjct 302 TTTCCATAACTTAGAGATCCATAAACAGGTTCACGAATACCATCAATATCCACTGGAGGA 361
Query 124916 GCTGCAATAAATGCAACGATGAA-ACATGCTGCTGCTGTGAGTAAGCATGGAATCATTAG 124974
|| ||||| || || | || || ||| | | ||| || | |||| || ||||| |
Sbjct 362 GCAGCAATGAAAGCGATAATAAATACA-GAAGTTGCGGTCAATAAGGTAGGGATCATCAA 420
Query 124975 AACACCAAACCAACCAACATAAA 124997
|||||||||||| |||| ||||
Sbjct 421 AACACCAAACCATCCAATGTAAA 443
>seq300680
Length=3790
Score = 174 bits (192), Expect = 2e-38
Identities = 222/303 (73%), Gaps = 2/303 (1%)
Strand=Plus/Plus
Query 124277 GAGTTGTTGAATGAAGCATACTGGAAGATAAGACGACCAAAGTAACCGTGTGCTGCTACT 124336
||||||||||| |||||||||||||| | || ||||| ||||| || || |||||
Sbjct 369 GAGTTGTTGAAACTAGCATACTGGAAGACCAATCGGCCAAAATAACCATGAGCGGCTACG 428
Query 124337 ATGTTGTATGTTT-CTTCTTCTTGTCCGAACTTATAACCATAGTTCTGTGACTCTTGCTC 124395
|| || || |||| |||||||||| ||||| || ||||| | || | || | ||
Sbjct 429 ATATTATAAGTTTTCTTCTTCTTGACCGAATTTGTAACCTTCATTAGCAAATTCATTTTC 488
Query 124396 TGTTGTTTCTCTGATTAGAGAAGATGTAACAAGAGAACCATGCATTGCTGAGAATAAAGA 124455
| | ||||| ||||||| | ||| || || | ||||||||||| || |||| ||
Sbjct 489 TCTGGTTTC-CTGATTAAACTAGAGGTTACCAAGGAACCATGCATAGCATTAAATAGGGA 547
Query 124456 TCCTCCGAACATTCCTGCTACTCCTGCCATGTGGAAAGGATGCATTAGAATGTTATGCTC 124515
| ||| | || ||||| | | |||||| || || ||||| |||||||| |||||
Sbjct 548 GCTGACGAGTACACCAGCTACGCTTAGCATGTGAAATGGGTGCATAAGAATGTTGTGCTC 607
Query 124516 TGCTTGGAAAACGAACATAAAGTTGAAAGTACCTGAGATACCAAGTGGCATACCATCAGA 124575
| ||||| || | ||| |||||||||||||| || || || || ||||||||||||||
Sbjct 608 AACCTGGAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGA 667
Query 124576 GAA 124578
||
Sbjct 668 AAA 670
>seq250312
Length=8481
Score = 161 bits (178), Expect = 1e-34
Identities = 317/466 (68%), Gaps = 17/466 (4%)
Strand=Plus/Minus
Query 124054 GTCTAGTGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCCAAGTTTGCTCT 124113
|||||| ||||| || || ||||| | ||||| ||||||||||||||| | ||| || |
Sbjct 2026 GTCTAGAGGGAAATTATGAGCATTACATTCATACATAACTTCCATACCAAGGTTAGCACA 1967
Query 124114 GTTTAGAACATCACCCCATGTTGGGACGATTTTTCCGTTAGCATCAACAACTGATTGGTT 124173
||| | | |||| |||| || | | | | | | || || || ||||| |
Sbjct 1966 GTTAATGATATCAGCCCAAGTATTAATTACATGACATTGACTGTCGACTACAGATTGATG 1907
Query 124174 AAAGTTGAAACCATTCAAGTTGAATGCCATTGTGCAGATACCCATAGAGGTTAACCATAC 124233
|| | |||||||| | |||| | ||||| |||| |||||| |||| ||
Sbjct 1906 GAAACTAAAACCATTTAGGTTGTAAGCCATAGTGCTGATACC---------TAAC---AC 1859
Query 124234 ACATACAACAG---GGAAAACT-GCTAGGAAGAAGTGAAGACTTCTTGAGTTGTTGAATG 124289
| ||| | ||| || || | ||||||||||| || | | | ||||||||||||
Sbjct 1858 A-ATAAACCAGATAGGCCAAGTAGCTAGGAAGAAATGTAAAAAACGTGAGTTGTTGAAAC 1800
Query 124290 AAGCATACTGGAAGATAAGACGACCAAAGTAACCGTGTGCTGCTACTATGTTGTATGTTT 124349
||||| ||||||| | |||||||| ||||| || || ||||| || || || |||
Sbjct 1799 TAGCATGTCGGAAGATCAATCGACCAAAATAACCATGAGCGGCTACAATATTCTAATTTT 1740
Query 124350 CTTCTTCTTGTCCGAACTTATAACCATAGTTCTGTGACTCTTGCTCTGTTGTTTCTCTGA 124409
|| ||||||| ||||| ||||||| | || | | || | || ||| ||||| ||||
Sbjct 1739 CTCCTTCTTGACCGAATATATAACCTTCATTAGCTTATTCATTCTTTGTGGTTTCCCTGA 1680
Query 124410 TTAGAGAAGATGTAACAAGAGAACCATGCATTGCTGAGAATAAAGATCCTCCGAACATTC 124469
| | | || || || | |||||| |||| || ||||| || | || | | |
Sbjct 1679 TCAAACTAGGGGTTACCAAGGAACCACGCATAGCACTGAATAGGGAGCTGCCAATTACAC 1620
Query 124470 CTGCTACTCCTGCCATGTGGAAAGGATGCATTAGAATGTTATGCTC 124515
| ||||| ||| |||||| || | ||| | |||||||| |||||
Sbjct 1619 CAGCTACGCCTAGCATGTGAAATGAGTGCCTAAGAATGTTGTGCTC 1574
>seq301434
Length=6657
Score = 131 bits (144), Expect = 2e-25
Identities = 177/243 (73%), Gaps = 8/243 (3%)
Strand=Plus/Minus
Query 139317 TGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTTGT 139376
|| |||||||| ||||| ||||| ||||||||||| || ||||| |||||||| || ||
Sbjct 3394 TGAGCTGTGCAAATGTTGCTGGTAGCTTTGTCTCTCCTGATATGTTGCTCTCTTGTCTGC 3335
Query 139377 AGTGCTAATCTGTATGCAGGATTGCCTTCGCTG--TC--CACTGACTGACCTACAATTCT 139432
| || | | | ||||| ||||| || | || |||| || ||| | ||||||
Sbjct 3334 ATCGCCATACGTAAAGCAGGCTTGCC--CGAAGAATCAACACTAAC--ACCAATAATTCT 3279
Query 139433 GCCAGGTATCTTTCTCTTATACTTGTCTGTTGTTGCAAAGAATGCAGCATGAGGACCTCC 139492
|| || ||| | ||||| |||| | || ||||||| || || ||||||||||||||
Sbjct 3278 TCCGGGCATCATCCTCTTGTACTCTTGTGACGTTGCAAGAAACGCCGCATGAGGACCTCC 3219
Query 139493 GTATCCCATAGGAATACCAAACCTTTGCATACTACCTACAGCAATATCAAATCCCCACTC 139552
|| ||||| |||| ||||| ||||| ||| || ||||||||| ||| ||||
Sbjct 3218 ATACCCCATCGGAACTCCAAATCTTTGAGCCGAACCCACCACAATATCAACTCCAAACTC 3159
Query 139553 ACC 139555
|||
Sbjct 3158 ACC 3156
>seq10884
Length=5042
Score = 120 bits (132), Expect = 3e-22
Identities = 116/149 (78%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 124430 GAACCATGCATTGCTGAGAATAAAGATCCTCCGAACATTCCTGCTACTCCTGCCATGTGG 124489
|||||||| || || ||||| || || ||||| | || ||||| ||| ||||||
Sbjct 3937 GAACCATGTATAGCAATGAATAGGGAGCCGCCGAATACACCAGCTACGCCTAGCATGTGA 3878
Query 124490 AAAGGATGCATTAGAATGTTATGCTCTGCTTGGAAAACGAACATAAAGTTGAAAGTACCT 124549
|| || ||||| |||||||| ||||| || ||||| || | ||| ||||||||||||||
Sbjct 3877 AATGGGTGCATAAGAATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCA 3818
Query 124550 GAGATACCAAGTGGCATACCATCAGAGAA 124578
|| || || || |||||||||||||| ||
Sbjct 3817 GAAATTCCTAGAGGCATACCATCAGAAAA 3789
>seq8631
Length=609
Score = 111 bits (122), Expect = 2e-19
Identities = 118/153 (77%), Gaps = 2/153 (1%)
Strand=Plus/Plus
Query 124422 TAACAAGAGAACCATGCATTGCTGAGAATAAAG-ATCCTCCGAACATTCCTGCTACTCCT 124480
|| |||| ||||||||||| || |||| | | | || ||||| | || ||||| ||
Sbjct 179 TACCAAG-GAACCATGCATAGCACTGAATTAGGGAGCCGCCGAATACACCAGCTACGTCT 237
Query 124481 GCCATGTGGAAAGGATGCATTAGAATGTTATGCTCTGCTTGGAAAACGAACATAAAGTTG 124540
|||||| || || ||||| |||||||| ||||| || ||||| || | ||| ||||||
Sbjct 238 AGCATGTGAAATGGGTGCATAAGAATGTTGTGCTCGGCCTGGAATACAATCATGAAGTTG 297
Query 124541 AAAGTACCTGAGATACCAAGTGGCATACCATCA 124573
|||||||| || || || || ||||||||||||
Sbjct 298 AAAGTACCAGAAATTCCTAGAGGCATACCATCA 330
Score = 86.0 bits (94), Expect = 7e-12
Identities = 94/125 (75%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 124682 AGTTCCCACTGTCTTCCCATGTATGCTGAAATACCAATAAGGAAGTGGAAAATTACCAAC 124741
|||||||||| | |||||||| | | ||||| | |||||| | || | |
Sbjct 373 AGTTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGT 432
Query 124742 TGATAAGGACCACCATTATACAACCATTCATCAACAGTTGCTGCTTCCCAGATTGGGTAG 124801
| ||||||||||||||| || ||||||||||||| | |||||||||||| ||||||||
Sbjct 433 TCATAAGGACCACCATTGTATAACCATTCATCAATGGATGCTGCTTCCCATATTGGGTAA 492
Query 124802 AAGTG 124806
|| ||
Sbjct 493 AAATG 497
>seq254652
Length=6058
Score = 95.1 bits (104), Expect = 1e-14
Identities = 162/234 (69%), Gaps = 1/234 (0%)
Strand=Plus/Minus
Query 124631 GGTGCTGAATAAGCAACACAGATCCAAGGACGCATTCCTAATCTGTATGATAGTTCCCAC 124690
|| |||||||| |||||| ||| |||| |||| || | | | | |||||||||
Sbjct 944 GGAGCTGAATATGCAACAACAATCAAAGGTCGCACACCCAGACGGAAACTAAGTTCCCAC 885
Query 124691 TGTCTTCCCATGTATGCTGAAATACCAATAAGGAAGTGGAAAATTACCAACTGATAAGGA 124750
| | |||||||| | | ||||| | |||||| | | | | | |||||||
Sbjct 884 TCGCGACCCATGTAACACGCTACACCAAGTAAGAAGTGTAGTACAATTAGTTCATAAGGA 825
Query 124751 CCACCATTATACAA-CCATTCATCAACAGTTGCTGCTTCCCAGATTGGGTAGAAGTGTAG 124809
|||||||| || || ||||||||||||| || ||||||| | ||| |||| || || |
Sbjct 824 CCACCATTGTATAAACCATTCATCAACAAATGTTGCTTCCTATATTAGGTAAAAATGCAA 765
Query 124810 TCCGATAGCGTTTGATGATGGAACAACTGCACCAGAGATGATGTTGTTACCATA 124863
|| |||| | || | |||| ||| |||| || || || ||||| |||||
Sbjct 764 ACCTGTAGCTGTAGAAGTAGGAATAACAACACCTGAAATAATATTGTTTCCATA 711
>seq33322
Length=15627
Score = 91.5 bits (100), Expect = 2e-13
Identities = 97/128 (76%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 123293 ACTGTTGCACCATGAATGGCACATAGTAATGCTCCACCTAGTATTCCTGCAACACCCATC 123352
|| || ||||||||||| || ||||| || || |||| | || || ||||| ||||||
Sbjct 6784 ACGGTAGCACCATGAATAGCGCATAGCAAAGCAGCACCCAATACACCGGCAACTCCCATC 6725
Query 123353 ATGTGAAATGGATTCAATGTAATGTTGTGGAAACCTTGTATGAATAAGATATAACGAAAG 123412
|| |||||||| |||||||| ||| || || ||||| | || | |||| | |||||
Sbjct 6724 ATATGAAATGGGTTCAATGTCCAGTTATGAAATCCTTGAAAAAAGAGGATAAATCGAAAT 6665
Query 123413 ATTGCTGC 123420
|| |||||
Sbjct 6664 ATAGCTGC 6657
>seq231965
Length=7494
Score = 86.0 bits (94), Expect = 7e-12
Identities = 131/187 (70%), Gaps = 0/187 (0%)
Strand=Plus/Minus
Query 124473 CTACTCCTGCCATGTGGAAAGGATGCATTAGAATGTTATGCTCTGCTTGGAAAACGAACA 124532
|||| ||| ||||| || || ||||| |||||||| ||||| | | || || | ||
Sbjct 6768 CTACGCCTAGCATGTAAAATGGGTGCATAAGAATGTTGTGCTCAACCTTAAATACAATCA 6709
Query 124533 TAAAGTTGAAAGTACCTGAGATACCAAGTGGCATACCATCAGAGAATGAACCCTGACCAA 124592
| |||||||||||||| | || || || || ||||||| ||| || | |||| ||
Sbjct 6708 TGAAGTTGAAAGTACCATAAATTCCTAGAGGAATACCATGAGAAAAGCTTCATTGACAAA 6649
Query 124593 ATGGGTATACTAAGAATACAGCGAATGCAGCAGATACTGGTGCTGAATAAGCAACACAGA 124652
|||||| | ||||| ||| | |||| | || | |||| ||| |||||| |
Sbjct 6648 TTGGGTAGATCAAGAAAACATCAGTCGCAGTTGCAACAAGAGCTGGATATGCAACAATAA 6589
Query 124653 TCCAAGG 124659
|||||||
Sbjct 6588 TCCAAGG 6582
>seq35354
Length=12468
Score = 86.0 bits (94), Expect = 7e-12
Identities = 64/75 (85%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 124744 ATAAGGACCACCATTATACAACCATTCATCAACAGTTGCTGCTTCCCAGATTGGGTAGAA 124803
||||||||||||||| || |||||||||||||| | |||||||||||| |||||||| ||
Sbjct 10611 ATAAGGACCACCATTGTATAACCATTCATCAACGGATGCTGCTTCCCATATTGGGTAAAA 10552
Query 124804 GTGTAGTCCGATAGC 124818
|| | || |||||
Sbjct 10551 ATGCAAACCTATAGC 10537
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 575640889603120
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