Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq107965 302 5e-77 seq169634 201 1e-46 seq300680 174 2e-38 seq250312 161 1e-34 seq301434 131 2e-25 seq10884 120 3e-22 seq8631 111 2e-19 seq254652 95.1 1e-14 seq33322 91.5 2e-13 seq231965 86.0 7e-12 seq35354 86.0 7e-12 >seq107965 Length=6474 Score = 302 bits (334), Expect = 5e-77 Identities = 392/542 (72%), Gaps = 0/542 (0%) Strand=Plus/Minus Query 124277 GAGTTGTTGAATGAAGCATACTGGAAGATAAGACGACCAAAGTAACCGTGTGCTGCTACT 124336 ||||||||||| |||||| |||||||| | || ||||| ||||| || | ||||| Sbjct 6462 GAGTTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAACGGCTACG 6403 Query 124337 ATGTTGTATGTTTCTTCTTCTTGTCCGAACTTATAACCATAGTTCTGTGACTCTTGCTCT 124396 || || || ||||| |||||| | || || | ||||| | || || | | ||| Sbjct 6402 ATATTATAAGTTTCATCTTCTAGACCAAATCTGTAACCTTCATTAGCAGATTTATTTTCT 6343 Query 124397 GTTGTTTCTCTGATTAGAGAAGATGTAACAAGAGAACCATGCATTGCTGAGAATAAAGAT 124456 || ||||| ||||| | | |||| || || | ||||||||||| || ||||| || Sbjct 6342 GTGGTTTCCCTGATCAAACAAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAG 6283 Query 124457 CCTCCGAACATTCCTGCTACTCCTGCCATGTGGAAAGGATGCATTAGAATGTTATGCTCT 124516 || |||| | || ||||| ||| |||||| || || ||||| |||||||| ||||| Sbjct 6282 CCGCCGATTACACCAGCTACACCTAGCATGTGAAATGGGTGCATAAGAATGTTGTGCTCA 6223 Query 124517 GCTTGGAAAACGAACATAAAGTTGAAAGTACCTGAGATACCAAGTGGCATACCATCAGAG 124576 || ||||| || | ||| |||||||||||||| || || || || |||||||||||||| Sbjct 6222 GCCTGGAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAA 6163 Query 124577 AATGAACCCTGACCAAATGGGTATACTAAGAATACAGCGAATGCAGCAGATACTGGTGCT 124636 || || ||||||| |||||| | ||||| ||| | ||||| | || || ||| Sbjct 6162 AAGCTTCCTTGACCAATTGGGTAGATCAAGAAAACAACACTCGCAGCTGCAACAGGAGCT 6103 Query 124637 GAATAAGCAACACAGATCCAAGGACGCATTCCTAATCTGTATGATAGTTCCCACTGTCTT 124696 ||||| |||||| ||||||| ||||| || | | | |||||||||| | Sbjct 6102 GAATATGCAACAACCATCCAAGTTCGCATACCCAGACGAAAACTAAGTTCCCACTCACGA 6043 Query 124697 CCCATGTATGCTGAAATACCAATAAGGAAGTGGAAAATTACCAACTGATAAGGACCACCA 124756 |||||||| | | ||||| | |||||| | || | | | ||||||||||||| Sbjct 6042 CCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCA 5983 Query 124757 TTATACAACCATTCATCAACAGTTGCTGCTTCCCAGATTGGGTAGAAGTGTAGTCCGATA 124816 || || |||||||||||||||| || ||||||||| |||||||| || || | || ||| Sbjct 5982 TTGTATAACCATTCATCAACAGATGTTGCTTCCCATATTGGGTAAAAATGCAAACCTATA 5923 Query 124817 GC 124818 || Sbjct 5922 GC 5921 >seq169634 Length=720 Score = 201 bits (222), Expect = 1e-46 Identities = 312/443 (70%), Gaps = 2/443 (0%) Strand=Plus/Plus Query 124556 CCAAGTGGCATACCATCAGAGAATGAACCCTGACCAAATGGGTATACTAAGAATACAGCG 124615 || || |||||||||||||| || || ||||||| |||||| | ||||| ||||| Sbjct 2 CCTAGAGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCA 61 Query 124616 AATGCAGCAGATACTGGTGCTGAATAAGCAACACAGATCCAAGGACGCATTCCTAATCTG 124675 |||||| | || | |||||||| |||||| |||||||| ||||| || | | | Sbjct 62 GTTGCAGCTGCAACAGAAGCTGAATATGCAACAACAATCCAAGGTCGCATACCCAGACGG 121 Query 124676 TATGATAGTTCCCACTGTCTTCCCATGTATGCTGAAATACCAATAAGGAAGTGGAAAATT 124735 | |||||||||| | |||||||| | | ||||| | |||||| | || Sbjct 122 AAACTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACA 181 Query 124736 ACCAACTGATAAGGACCACCATTATACAACCATTCATCAACAGTTGCTGCTTCCCAGATT 124795 | | | ||||||||||||||| || |||||||||||||| | |||||||||||| ||| Sbjct 182 ATTAGTTCATAAGGACCACCATTGTATAACCATTCATCAACGGATGCTGCTTCCCATATT 241 Query 124796 GGGTAGAAGTGTAGTCCGATAGCGTTTGATGATGGAACAACTGCACCAGAGATGATGTTG 124855 ||||| || || | || ||||| || | |||| || |||| || || || ||| Sbjct 242 GGGTAAAAATGCAAACCTATAGCTGCAGAAGTAGGAATAATGACACCTGAAATAATATTG 301 Query 124856 TTACCATATAAGAAAGAACCCGCTACTGGTTCTCTGATTCCGTCGATATCGACAGGAGGT 124915 || ||||| | ||| || || ||||| | || || || ||||| || ||||| Sbjct 302 TTTCCATAACTTAGAGATCCATAAACAGGTTCACGAATACCATCAATATCCACTGGAGGA 361 Query 124916 GCTGCAATAAATGCAACGATGAA-ACATGCTGCTGCTGTGAGTAAGCATGGAATCATTAG 124974 || ||||| || || | || || ||| | | ||| || | |||| || ||||| | Sbjct 362 GCAGCAATGAAAGCGATAATAAATACA-GAAGTTGCGGTCAATAAGGTAGGGATCATCAA 420 Query 124975 AACACCAAACCAACCAACATAAA 124997 |||||||||||| |||| |||| Sbjct 421 AACACCAAACCATCCAATGTAAA 443 >seq300680 Length=3790 Score = 174 bits (192), Expect = 2e-38 Identities = 222/303 (73%), Gaps = 2/303 (1%) Strand=Plus/Plus Query 124277 GAGTTGTTGAATGAAGCATACTGGAAGATAAGACGACCAAAGTAACCGTGTGCTGCTACT 124336 ||||||||||| |||||||||||||| | || ||||| ||||| || || ||||| Sbjct 369 GAGTTGTTGAAACTAGCATACTGGAAGACCAATCGGCCAAAATAACCATGAGCGGCTACG 428 Query 124337 ATGTTGTATGTTT-CTTCTTCTTGTCCGAACTTATAACCATAGTTCTGTGACTCTTGCTC 124395 || || || |||| |||||||||| ||||| || ||||| | || | || | || Sbjct 429 ATATTATAAGTTTTCTTCTTCTTGACCGAATTTGTAACCTTCATTAGCAAATTCATTTTC 488 Query 124396 TGTTGTTTCTCTGATTAGAGAAGATGTAACAAGAGAACCATGCATTGCTGAGAATAAAGA 124455 | | ||||| ||||||| | ||| || || | ||||||||||| || |||| || Sbjct 489 TCTGGTTTC-CTGATTAAACTAGAGGTTACCAAGGAACCATGCATAGCATTAAATAGGGA 547 Query 124456 TCCTCCGAACATTCCTGCTACTCCTGCCATGTGGAAAGGATGCATTAGAATGTTATGCTC 124515 | ||| | || ||||| | | |||||| || || ||||| |||||||| ||||| Sbjct 548 GCTGACGAGTACACCAGCTACGCTTAGCATGTGAAATGGGTGCATAAGAATGTTGTGCTC 607 Query 124516 TGCTTGGAAAACGAACATAAAGTTGAAAGTACCTGAGATACCAAGTGGCATACCATCAGA 124575 | ||||| || | ||| |||||||||||||| || || || || |||||||||||||| Sbjct 608 AACCTGGAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGA 667 Query 124576 GAA 124578 || Sbjct 668 AAA 670 >seq250312 Length=8481 Score = 161 bits (178), Expect = 1e-34 Identities = 317/466 (68%), Gaps = 17/466 (4%) Strand=Plus/Minus Query 124054 GTCTAGTGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCCAAGTTTGCTCT 124113 |||||| ||||| || || ||||| | ||||| ||||||||||||||| | ||| || | Sbjct 2026 GTCTAGAGGGAAATTATGAGCATTACATTCATACATAACTTCCATACCAAGGTTAGCACA 1967 Query 124114 GTTTAGAACATCACCCCATGTTGGGACGATTTTTCCGTTAGCATCAACAACTGATTGGTT 124173 ||| | | |||| |||| || | | | | | | || || || ||||| | Sbjct 1966 GTTAATGATATCAGCCCAAGTATTAATTACATGACATTGACTGTCGACTACAGATTGATG 1907 Query 124174 AAAGTTGAAACCATTCAAGTTGAATGCCATTGTGCAGATACCCATAGAGGTTAACCATAC 124233 || | |||||||| | |||| | ||||| |||| |||||| |||| || Sbjct 1906 GAAACTAAAACCATTTAGGTTGTAAGCCATAGTGCTGATACC---------TAAC---AC 1859 Query 124234 ACATACAACAG---GGAAAACT-GCTAGGAAGAAGTGAAGACTTCTTGAGTTGTTGAATG 124289 | ||| | ||| || || | ||||||||||| || | | | |||||||||||| Sbjct 1858 A-ATAAACCAGATAGGCCAAGTAGCTAGGAAGAAATGTAAAAAACGTGAGTTGTTGAAAC 1800 Query 124290 AAGCATACTGGAAGATAAGACGACCAAAGTAACCGTGTGCTGCTACTATGTTGTATGTTT 124349 ||||| ||||||| | |||||||| ||||| || || ||||| || || || ||| Sbjct 1799 TAGCATGTCGGAAGATCAATCGACCAAAATAACCATGAGCGGCTACAATATTCTAATTTT 1740 Query 124350 CTTCTTCTTGTCCGAACTTATAACCATAGTTCTGTGACTCTTGCTCTGTTGTTTCTCTGA 124409 || ||||||| ||||| ||||||| | || | | || | || ||| ||||| |||| Sbjct 1739 CTCCTTCTTGACCGAATATATAACCTTCATTAGCTTATTCATTCTTTGTGGTTTCCCTGA 1680 Query 124410 TTAGAGAAGATGTAACAAGAGAACCATGCATTGCTGAGAATAAAGATCCTCCGAACATTC 124469 | | | || || || | |||||| |||| || ||||| || | || | | | Sbjct 1679 TCAAACTAGGGGTTACCAAGGAACCACGCATAGCACTGAATAGGGAGCTGCCAATTACAC 1620 Query 124470 CTGCTACTCCTGCCATGTGGAAAGGATGCATTAGAATGTTATGCTC 124515 | ||||| ||| |||||| || | ||| | |||||||| ||||| Sbjct 1619 CAGCTACGCCTAGCATGTGAAATGAGTGCCTAAGAATGTTGTGCTC 1574 >seq301434 Length=6657 Score = 131 bits (144), Expect = 2e-25 Identities = 177/243 (73%), Gaps = 8/243 (3%) Strand=Plus/Minus Query 139317 TGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTTGT 139376 || |||||||| ||||| ||||| ||||||||||| || ||||| |||||||| || || Sbjct 3394 TGAGCTGTGCAAATGTTGCTGGTAGCTTTGTCTCTCCTGATATGTTGCTCTCTTGTCTGC 3335 Query 139377 AGTGCTAATCTGTATGCAGGATTGCCTTCGCTG--TC--CACTGACTGACCTACAATTCT 139432 | || | | | ||||| ||||| || | || |||| || ||| | |||||| Sbjct 3334 ATCGCCATACGTAAAGCAGGCTTGCC--CGAAGAATCAACACTAAC--ACCAATAATTCT 3279 Query 139433 GCCAGGTATCTTTCTCTTATACTTGTCTGTTGTTGCAAAGAATGCAGCATGAGGACCTCC 139492 || || ||| | ||||| |||| | || ||||||| || || |||||||||||||| Sbjct 3278 TCCGGGCATCATCCTCTTGTACTCTTGTGACGTTGCAAGAAACGCCGCATGAGGACCTCC 3219 Query 139493 GTATCCCATAGGAATACCAAACCTTTGCATACTACCTACAGCAATATCAAATCCCCACTC 139552 || ||||| |||| ||||| ||||| ||| || ||||||||| ||| |||| Sbjct 3218 ATACCCCATCGGAACTCCAAATCTTTGAGCCGAACCCACCACAATATCAACTCCAAACTC 3159 Query 139553 ACC 139555 ||| Sbjct 3158 ACC 3156 >seq10884 Length=5042 Score = 120 bits (132), Expect = 3e-22 Identities = 116/149 (78%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 124430 GAACCATGCATTGCTGAGAATAAAGATCCTCCGAACATTCCTGCTACTCCTGCCATGTGG 124489 |||||||| || || ||||| || || ||||| | || ||||| ||| |||||| Sbjct 3937 GAACCATGTATAGCAATGAATAGGGAGCCGCCGAATACACCAGCTACGCCTAGCATGTGA 3878 Query 124490 AAAGGATGCATTAGAATGTTATGCTCTGCTTGGAAAACGAACATAAAGTTGAAAGTACCT 124549 || || ||||| |||||||| ||||| || ||||| || | ||| |||||||||||||| Sbjct 3877 AATGGGTGCATAAGAATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCA 3818 Query 124550 GAGATACCAAGTGGCATACCATCAGAGAA 124578 || || || || |||||||||||||| || Sbjct 3817 GAAATTCCTAGAGGCATACCATCAGAAAA 3789 >seq8631 Length=609 Score = 111 bits (122), Expect = 2e-19 Identities = 118/153 (77%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 124422 TAACAAGAGAACCATGCATTGCTGAGAATAAAG-ATCCTCCGAACATTCCTGCTACTCCT 124480 || |||| ||||||||||| || |||| | | | || ||||| | || ||||| || Sbjct 179 TACCAAG-GAACCATGCATAGCACTGAATTAGGGAGCCGCCGAATACACCAGCTACGTCT 237 Query 124481 GCCATGTGGAAAGGATGCATTAGAATGTTATGCTCTGCTTGGAAAACGAACATAAAGTTG 124540 |||||| || || ||||| |||||||| ||||| || ||||| || | ||| |||||| Sbjct 238 AGCATGTGAAATGGGTGCATAAGAATGTTGTGCTCGGCCTGGAATACAATCATGAAGTTG 297 Query 124541 AAAGTACCTGAGATACCAAGTGGCATACCATCA 124573 |||||||| || || || || |||||||||||| Sbjct 298 AAAGTACCAGAAATTCCTAGAGGCATACCATCA 330 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 124682 AGTTCCCACTGTCTTCCCATGTATGCTGAAATACCAATAAGGAAGTGGAAAATTACCAAC 124741 |||||||||| | |||||||| | | ||||| | |||||| | || | | Sbjct 373 AGTTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGT 432 Query 124742 TGATAAGGACCACCATTATACAACCATTCATCAACAGTTGCTGCTTCCCAGATTGGGTAG 124801 | ||||||||||||||| || ||||||||||||| | |||||||||||| |||||||| Sbjct 433 TCATAAGGACCACCATTGTATAACCATTCATCAATGGATGCTGCTTCCCATATTGGGTAA 492 Query 124802 AAGTG 124806 || || Sbjct 493 AAATG 497 >seq254652 Length=6058 Score = 95.1 bits (104), Expect = 1e-14 Identities = 162/234 (69%), Gaps = 1/234 (0%) Strand=Plus/Minus Query 124631 GGTGCTGAATAAGCAACACAGATCCAAGGACGCATTCCTAATCTGTATGATAGTTCCCAC 124690 || |||||||| |||||| ||| |||| |||| || | | | | ||||||||| Sbjct 944 GGAGCTGAATATGCAACAACAATCAAAGGTCGCACACCCAGACGGAAACTAAGTTCCCAC 885 Query 124691 TGTCTTCCCATGTATGCTGAAATACCAATAAGGAAGTGGAAAATTACCAACTGATAAGGA 124750 | | |||||||| | | ||||| | |||||| | | | | | ||||||| Sbjct 884 TCGCGACCCATGTAACACGCTACACCAAGTAAGAAGTGTAGTACAATTAGTTCATAAGGA 825 Query 124751 CCACCATTATACAA-CCATTCATCAACAGTTGCTGCTTCCCAGATTGGGTAGAAGTGTAG 124809 |||||||| || || ||||||||||||| || ||||||| | ||| |||| || || | Sbjct 824 CCACCATTGTATAAACCATTCATCAACAAATGTTGCTTCCTATATTAGGTAAAAATGCAA 765 Query 124810 TCCGATAGCGTTTGATGATGGAACAACTGCACCAGAGATGATGTTGTTACCATA 124863 || |||| | || | |||| ||| |||| || || || ||||| ||||| Sbjct 764 ACCTGTAGCTGTAGAAGTAGGAATAACAACACCTGAAATAATATTGTTTCCATA 711 >seq33322 Length=15627 Score = 91.5 bits (100), Expect = 2e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 123293 ACTGTTGCACCATGAATGGCACATAGTAATGCTCCACCTAGTATTCCTGCAACACCCATC 123352 || || ||||||||||| || ||||| || || |||| | || || ||||| |||||| Sbjct 6784 ACGGTAGCACCATGAATAGCGCATAGCAAAGCAGCACCCAATACACCGGCAACTCCCATC 6725 Query 123353 ATGTGAAATGGATTCAATGTAATGTTGTGGAAACCTTGTATGAATAAGATATAACGAAAG 123412 || |||||||| |||||||| ||| || || ||||| | || | |||| | ||||| Sbjct 6724 ATATGAAATGGGTTCAATGTCCAGTTATGAAATCCTTGAAAAAAGAGGATAAATCGAAAT 6665 Query 123413 ATTGCTGC 123420 || ||||| Sbjct 6664 ATAGCTGC 6657 >seq231965 Length=7494 Score = 86.0 bits (94), Expect = 7e-12 Identities = 131/187 (70%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 124473 CTACTCCTGCCATGTGGAAAGGATGCATTAGAATGTTATGCTCTGCTTGGAAAACGAACA 124532 |||| ||| ||||| || || ||||| |||||||| ||||| | | || || | || Sbjct 6768 CTACGCCTAGCATGTAAAATGGGTGCATAAGAATGTTGTGCTCAACCTTAAATACAATCA 6709 Query 124533 TAAAGTTGAAAGTACCTGAGATACCAAGTGGCATACCATCAGAGAATGAACCCTGACCAA 124592 | |||||||||||||| | || || || || ||||||| ||| || | |||| || Sbjct 6708 TGAAGTTGAAAGTACCATAAATTCCTAGAGGAATACCATGAGAAAAGCTTCATTGACAAA 6649 Query 124593 ATGGGTATACTAAGAATACAGCGAATGCAGCAGATACTGGTGCTGAATAAGCAACACAGA 124652 |||||| | ||||| ||| | |||| | || | |||| ||| |||||| | Sbjct 6648 TTGGGTAGATCAAGAAAACATCAGTCGCAGTTGCAACAAGAGCTGGATATGCAACAATAA 6589 Query 124653 TCCAAGG 124659 ||||||| Sbjct 6588 TCCAAGG 6582 >seq35354 Length=12468 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 124744 ATAAGGACCACCATTATACAACCATTCATCAACAGTTGCTGCTTCCCAGATTGGGTAGAA 124803 ||||||||||||||| || |||||||||||||| | |||||||||||| |||||||| || Sbjct 10611 ATAAGGACCACCATTGTATAACCATTCATCAACGGATGCTGCTTCCCATATTGGGTAAAA 10552 Query 124804 GTGTAGTCCGATAGC 124818 || | || ||||| Sbjct 10551 ATGCAAACCTATAGC 10537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 575640889603120