Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27]
463,906 sequences; 661,937,708 total letters
Query= NC_020852.1
Length=186468
Score E
Sequences producing significant alignments: (Bits) Value
seq275305 120 4e-22
seq293582 91.5 2e-13
seq180108 89.7 6e-13
seq162260 89.7 6e-13
seq161111 84.2 3e-11
>seq275305
Length=4240
Score = 120 bits (132), Expect = 4e-22
Identities = 276/416 (66%), Gaps = 0/416 (0%)
Strand=Plus/Plus
Query 175231 GAGATTGTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCC 175290
||| |||| || ||||| ||| | || ||||| | || |||||| ||| ||
Sbjct 3249 GAGGTTGTCGAGTTTCTAAAGAAGCCAGAGAGGTTCACTGCTGTTGGTGCTCGGATTCCG 3308
Query 175291 CGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATC 175350
|| | ||||| | |||| || || || ||||| || || || || |||||
Sbjct 3309 AAGGGTGTTCTTCTTGTGGGTCCTCCGGGAACTGGAAAAACACTGCTAGCAAAGGCCATT 3368
Query 175351 GCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTT 175410
|| |||||| || ||| || || || || | | | ||||| |||||||||
Sbjct 3369 GCTGGTGAAGCAGGTGTTCCGTTTTTCTCTATTTCGGGTTCGGAGTTTGTTGAGATGTTT 3428
Query 175411 GTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCA 175470
|||||||| ||||| ||| ||| | |||||||| | | ||| || ||| ||
Sbjct 3429 GTTGGTGTTGGTGCTTCAAGAGTTAGAGATCTCTTCAAGAAGGCCAAGGAGAATGCTCCT 3488
Query 175471 TGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATG 175530
|||||||| || ||||||| |||||||| || || |||| | | ||||| |
Sbjct 3489 TGTATTGTGTTTGTTGATGAAATTGATGCTGTTGGGCGGCAAAGGGGGACTGGTATTGGA 3548
Query 175531 CCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTT 175590
| ||||| || ||||||||||| | || || || | ||||||||||||||||||
Sbjct 3549 GGTGGGAATGATGAAAGAGAACAAACGCTGAACCAGCTTTTGACCGAGATGGATGGCTTT 3608
Query 175591 GACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGA 175646
|| | || || ||| | || |||| || || || || | ||||| |||||
Sbjct 3609 GAAGGGAACACAGGTATTATTGTAGTTGCAGCTACCAACCGTGCAGATATTCTTGA 3664
>seq293582
Length=2029
Score = 91.5 bits (100), Expect = 2e-13
Identities = 110/150 (73%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 65068 TCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCA 65127
|||||||| ||||| | | || || || ||||| ||||| ||||||||||||||
Sbjct 1460 TCCTTCGCGGAGCGGATCGTCGCCTTCGCCTGTGTCGAGGGCATCTTCTTCTCCGGAAGC 1401
Query 65128 TTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAAT 65187
|||||||| || | ||| | |||||||| || || ||||| |||||| ||||| ||
Sbjct 1400 TTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTGATGCCGGGCCTAACGTTCTCCAAC 1341
Query 65188 GAACTTATTTCCCGAGATGAGGGTCTCCAC 65217
||| | || || | || || || || |||
Sbjct 1340 GAATTGATCTCGAGGGACGAAGGCCTGCAC 1311
>seq180108
Length=14591
Score = 89.7 bits (98), Expect = 6e-13
Identities = 162/230 (70%), Gaps = 8/230 (3%)
Strand=Plus/Minus
Query 75129 GGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCT-ATCT--TCAAC 75185
|||||| ||| | || ||| |||||| | ||||||||||||| || || |||| | ||
Sbjct 8930 GGGACTTTGACTATGATTATTTTGGTTTTAAAACCCTTGAGA-GATCTTATCTATTGAA- 8873
Query 75186 GGCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCA 75245
| || | || | | | |||| || || | ||| | ||| |||| ||| | || |
Sbjct 8872 -GATCCAAGGGAAAGTTGTTGAAAGGCCTCAACATATGCTGATGAGGGTTGCAGTTGGGA 8814
Query 75246 TCCACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCA-AGGTATG 75304
| || ||| | ||||||||||| | ||| || || |||||| || |||| |
Sbjct 8813 TTCATAAGGATAATATTGATTCTGTTATCAGGACTTATCACTTGATGTCACAGAGGTG-G 8755
Query 75305 TTCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCA 75354
|||| ||| || | || ||||||||||||||||| |||||||| || ||
Sbjct 8754 TTCACTCATGCTTCTCCCACCCTCTTCAATGCTGGAACACCAAGGCCCCA 8705
>seq162260
Length=11445
Score = 89.7 bits (98), Expect = 6e-13
Identities = 188/280 (67%), Gaps = 8/280 (3%)
Strand=Plus/Minus
Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374
|| || || ||||||||||| | || ||||| | || || || | || || ||
Sbjct 8181 CCGGGGACCGGAAAGACCCTTTTGGCTCGAGCGGTGGCCGGAGAGGCCGGCGTGCCGTTT 8122
Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434
|| ||| | || | | || || ||| ||||||| || || || || | |||
Sbjct 8121 TTCTCGTGTGCCGCGTCCGAGTTCGTTGAGTTGTTTGTGGGCGTTGGGGCTTCTCGAGTT 8062
Query 175435 CGCGATCTCTTTGAAATCGCCCGCGAAAATCAA----CCATGTATTGTCTTCATTGATGA 175490
|| ||| | ||||| | || |||| || ||||| ||||| || || |||||
Sbjct 8061 CGAGATTTGTTTGAGAAGGC----GAAATCGAAGGCGCCATGCATTGTGTTTATAGATGA 8006
Query 175491 GATTGATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGA 175550
||| ||||| || || | |||| | | |||||| | | |||||| || || ||
Sbjct 8005 GATAGATGCTGTAGGAAGGCAAAGAGGTGCTGGTCTTGGTGGTGGAAATGATGAAAGGGA 7946
Query 175551 ACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTT 175590
|||||| |||||||||||| | ||||||||||| || |||
Sbjct 7945 ACAAACGATTAATCAACTATTGACCGAGATGGACGGGTTT 7906
>seq161111
Length=12134
Score = 84.2 bits (92), Expect = 3e-11
Identities = 161/230 (70%), Gaps = 8/230 (3%)
Strand=Plus/Plus
Query 75129 GGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCT-ATCT--TCAAC 75185
|||||| ||| | || ||| |||||| | ||||||||||||| || || |||| | ||
Sbjct 4682 GGGACTTTGACTATGATTATTTTGGTTTTAAAACCCTTGAGA-GATCTTATCTATTGAA- 4739
Query 75186 GGCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCA 75245
| || | || | | | |||| || || | ||| | ||| |||| || | || |
Sbjct 4740 -GATCCAAGGGAAAGTTGTTGAAAGGCCTCAACATATGCTGATGAGGGTTTCAGTTGGAA 4798
Query 75246 TCCACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCA-AGGTATG 75304
| || ||| |||| |||||||| | ||| || || |||||| || |||| |
Sbjct 4799 TTCATAAGGATAACATCGATTCTGTAATCAGGACTTATCACTTGATGTCACAGAGGTG-G 4857
Query 75305 TTCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCA 75354
|||| ||| || | || ||||||||||||||||| |||||||| || ||
Sbjct 4858 TTCACTCATGCTTCTCCCACCCTCTTCAATGCTGGAACACCAAGGCCCCA 4907
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593110197289280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |