Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq275305 120 4e-22 seq293582 91.5 2e-13 seq180108 89.7 6e-13 seq162260 89.7 6e-13 seq161111 84.2 3e-11 >seq275305 Length=4240 Score = 120 bits (132), Expect = 4e-22 Identities = 276/416 (66%), Gaps = 0/416 (0%) Strand=Plus/Plus Query 175231 GAGATTGTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCC 175290 ||| |||| || ||||| ||| | || ||||| | || |||||| ||| || Sbjct 3249 GAGGTTGTCGAGTTTCTAAAGAAGCCAGAGAGGTTCACTGCTGTTGGTGCTCGGATTCCG 3308 Query 175291 CGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATC 175350 || | ||||| | |||| || || || ||||| || || || || ||||| Sbjct 3309 AAGGGTGTTCTTCTTGTGGGTCCTCCGGGAACTGGAAAAACACTGCTAGCAAAGGCCATT 3368 Query 175351 GCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTT 175410 || |||||| || ||| || || || || | | | ||||| ||||||||| Sbjct 3369 GCTGGTGAAGCAGGTGTTCCGTTTTTCTCTATTTCGGGTTCGGAGTTTGTTGAGATGTTT 3428 Query 175411 GTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCA 175470 |||||||| ||||| ||| ||| | |||||||| | | ||| || ||| || Sbjct 3429 GTTGGTGTTGGTGCTTCAAGAGTTAGAGATCTCTTCAAGAAGGCCAAGGAGAATGCTCCT 3488 Query 175471 TGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATG 175530 |||||||| || ||||||| |||||||| || || |||| | | ||||| | Sbjct 3489 TGTATTGTGTTTGTTGATGAAATTGATGCTGTTGGGCGGCAAAGGGGGACTGGTATTGGA 3548 Query 175531 CCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTT 175590 | ||||| || ||||||||||| | || || || | |||||||||||||||||| Sbjct 3549 GGTGGGAATGATGAAAGAGAACAAACGCTGAACCAGCTTTTGACCGAGATGGATGGCTTT 3608 Query 175591 GACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGA 175646 || | || || ||| | || |||| || || || || | ||||| ||||| Sbjct 3609 GAAGGGAACACAGGTATTATTGTAGTTGCAGCTACCAACCGTGCAGATATTCTTGA 3664 >seq293582 Length=2029 Score = 91.5 bits (100), Expect = 2e-13 Identities = 110/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 65068 TCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCA 65127 |||||||| ||||| | | || || || ||||| ||||| |||||||||||||| Sbjct 1460 TCCTTCGCGGAGCGGATCGTCGCCTTCGCCTGTGTCGAGGGCATCTTCTTCTCCGGAAGC 1401 Query 65128 TTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAAT 65187 |||||||| || | ||| | |||||||| || || ||||| |||||| ||||| || Sbjct 1400 TTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTGATGCCGGGCCTAACGTTCTCCAAC 1341 Query 65188 GAACTTATTTCCCGAGATGAGGGTCTCCAC 65217 ||| | || || | || || || || ||| Sbjct 1340 GAATTGATCTCGAGGGACGAAGGCCTGCAC 1311 >seq180108 Length=14591 Score = 89.7 bits (98), Expect = 6e-13 Identities = 162/230 (70%), Gaps = 8/230 (3%) Strand=Plus/Minus Query 75129 GGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCT-ATCT--TCAAC 75185 |||||| ||| | || ||| |||||| | ||||||||||||| || || |||| | || Sbjct 8930 GGGACTTTGACTATGATTATTTTGGTTTTAAAACCCTTGAGA-GATCTTATCTATTGAA- 8873 Query 75186 GGCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCA 75245 | || | || | | | |||| || || | ||| | ||| |||| ||| | || | Sbjct 8872 -GATCCAAGGGAAAGTTGTTGAAAGGCCTCAACATATGCTGATGAGGGTTGCAGTTGGGA 8814 Query 75246 TCCACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCA-AGGTATG 75304 | || ||| | ||||||||||| | ||| || || |||||| || |||| | Sbjct 8813 TTCATAAGGATAATATTGATTCTGTTATCAGGACTTATCACTTGATGTCACAGAGGTG-G 8755 Query 75305 TTCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCA 75354 |||| ||| || | || ||||||||||||||||| |||||||| || || Sbjct 8754 TTCACTCATGCTTCTCCCACCCTCTTCAATGCTGGAACACCAAGGCCCCA 8705 >seq162260 Length=11445 Score = 89.7 bits (98), Expect = 6e-13 Identities = 188/280 (67%), Gaps = 8/280 (3%) Strand=Plus/Minus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 || || || ||||||||||| | || ||||| | || || || | || || || Sbjct 8181 CCGGGGACCGGAAAGACCCTTTTGGCTCGAGCGGTGGCCGGAGAGGCCGGCGTGCCGTTT 8122 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 || ||| | || | | || || ||| ||||||| || || || || | ||| Sbjct 8121 TTCTCGTGTGCCGCGTCCGAGTTCGTTGAGTTGTTTGTGGGCGTTGGGGCTTCTCGAGTT 8062 Query 175435 CGCGATCTCTTTGAAATCGCCCGCGAAAATCAA----CCATGTATTGTCTTCATTGATGA 175490 || ||| | ||||| | || |||| || ||||| ||||| || || ||||| Sbjct 8061 CGAGATTTGTTTGAGAAGGC----GAAATCGAAGGCGCCATGCATTGTGTTTATAGATGA 8006 Query 175491 GATTGATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGA 175550 ||| ||||| || || | |||| | | |||||| | | |||||| || || || Sbjct 8005 GATAGATGCTGTAGGAAGGCAAAGAGGTGCTGGTCTTGGTGGTGGAAATGATGAAAGGGA 7946 Query 175551 ACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTT 175590 |||||| |||||||||||| | ||||||||||| || ||| Sbjct 7945 ACAAACGATTAATCAACTATTGACCGAGATGGACGGGTTT 7906 >seq161111 Length=12134 Score = 84.2 bits (92), Expect = 3e-11 Identities = 161/230 (70%), Gaps = 8/230 (3%) Strand=Plus/Plus Query 75129 GGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCT-ATCT--TCAAC 75185 |||||| ||| | || ||| |||||| | ||||||||||||| || || |||| | || Sbjct 4682 GGGACTTTGACTATGATTATTTTGGTTTTAAAACCCTTGAGA-GATCTTATCTATTGAA- 4739 Query 75186 GGCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCA 75245 | || | || | | | |||| || || | ||| | ||| |||| || | || | Sbjct 4740 -GATCCAAGGGAAAGTTGTTGAAAGGCCTCAACATATGCTGATGAGGGTTTCAGTTGGAA 4798 Query 75246 TCCACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCA-AGGTATG 75304 | || ||| |||| |||||||| | ||| || || |||||| || |||| | Sbjct 4799 TTCATAAGGATAACATCGATTCTGTAATCAGGACTTATCACTTGATGTCACAGAGGTG-G 4857 Query 75305 TTCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCA 75354 |||| ||| || | || ||||||||||||||||| |||||||| || || Sbjct 4858 TTCACTCATGCTTCTCCCACCCTCTTCAATGCTGGAACACCAAGGCCCCA 4907 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593110197289280