Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27]
463,906 sequences; 661,937,708 total letters
Query= NC_020855.1
Length=192497
Score E
Sequences producing significant alignments: (Bits) Value
seq107965 293 3e-74
seq300680 206 3e-48
seq169634 187 3e-42
seq250312 167 3e-36
seq10884 149 8e-31
seq8631 147 3e-30
seq231965 84.2 3e-11
seq92275 82.4 9e-11
seq36621 82.4 9e-11
>seq107965
Length=6474
Score = 293 bits (324), Expect = 3e-74
Identities = 418/586 (71%), Gaps = 2/586 (0%)
Strand=Plus/Minus
Query 8121 GTTGTT-AAACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAA 8179
|||||| |||| | ||||| |||||||| |||| ||||| || |||||| | || || |
Sbjct 6460 GTTGTTGAAACTA-GCATATTGGAAGATCAATCGGCCAAAATAACCATGAACGGCTACGA 6402
Query 8180 TATTATAGGTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAG 8239
||||||| || || |||||| ||||||| | ||||| | || ||| | | ||| |
Sbjct 6401 TATTATAAGTTTCATCTTCTAGACCAAATCTGTAACCTTCATTAGCAGATTTATTTTCTG 6342
Query 8240 TTGTCTCTCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATC 8299
| || || ||||| | | |||| || || || ||||| |||||||||||||| || || |
Sbjct 6341 TGGTTTCCCTGATCAAACAAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGC 6282
Query 8300 CACCGAACATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTG 8359
| |||| | ||| ||||| ||| ||| || || || |||||||||||||| ||||| |
Sbjct 6281 CGCCGATTACACCAGCTACACCTAGCATGTGAAATGGGTGCATAAGAATGTTGTGCTCAG 6222
Query 8360 CTTGGAATACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGA 8419
| |||||||| | ||||||||| || ||||||||||| ||||||||||| |||||||| |
Sbjct 6221 CCTGGAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAA 6162
Query 8420 ATGAACCCTGACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCAC 8479
| || ||||||| ||| || | ||||| || | ||||| | || |||||
Sbjct 6161 AGCTTCCTTGACCAATTGGGTAGATCAAGAAAACAACACTCGCAGCTGCAACAGGAGCTG 6102
Query 8480 TATATGCTACACAGATCCATGGTCTCATACCTAAGCGGTATGATAACTCCCACTGTCTAC 8539
|||||| ||| ||||| | || |||||| | || | | ||||||| | ||
Sbjct 6101 AATATGCAACAACCATCCAAGTTCGCATACCCAGACGAAAACTAAGTTCCCACTCACGAC 6042
Query 8540 CCATGTAAGCAGAAATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCCGT 8599
|||||||| || | |||| | |||||| | | || | | ||| ||||| || |
Sbjct 6041 CCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCAT 5982
Query 8600 TATACAACCACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATAG 8659
| || ||||| ||||| | | | |||||||| || || || || || || || ||||
Sbjct 5981 TGTATAACCATTCATCAACAGATGTTGCTTCCCATATTGGGTAAAAATGCAAACCTATAG 5922
Query 8660 CGTTGGAAGATGGAACGACAGCACCAGAGATGATGTTGTTTCCATA 8705
| ||| |||| | | ||| | || || |||||||||||
Sbjct 5921 CTGCAGAAATAGGAATAATGGTACCTAAAATAATATTGTTTCCATA 5876
>seq300680
Length=3790
Score = 206 bits (228), Expect = 3e-48
Identities = 230/302 (76%), Gaps = 4/302 (1%)
Strand=Plus/Plus
Query 8121 GTTGTT-AAACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAA 8179
|||||| |||| | ||||||||||||| |||| ||||| || |||||||| || || |
Sbjct 371 GTTGTTGAAACTA-GCATACTGGAAGACCAATCGGCCAAAATAACCATGAGCGGCTACGA 429
Query 8180 TATTATAGGTCT-CTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCA 8238
||||||| || | ||||||||||||| || || ||||| | || | | || | |||
Sbjct 430 TATTATAAGTTTTCTTCTTCTTGACCGAATTTGTAACCTTCATTAGCAAATTCATTTTCT 489
Query 8239 GTTGTCTCTCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGAT 8298
| || || ||||||| | ||| || || || ||||| ||||||||| | || || ||
Sbjct 490 CTGGTTTC-CTGATTAAACTAGAGGTTACCAAGGAACCATGCATAGCATTAAATAGGGAG 548
Query 8299 CCACCGAACATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCT 8358
| ||| | ||| ||||| | | ||| || || || |||||||||||||| |||||
Sbjct 549 CTGACGAGTACACCAGCTACGCTTAGCATGTGAAATGGGTGCATAAGAATGTTGTGCTCA 608
Query 8359 GCTTGGAATACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAG 8418
| |||||||| | ||||||||| || ||||||||||| ||||||||||| ||||||||
Sbjct 609 ACCTGGAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAA 668
Query 8419 AA 8420
||
Sbjct 669 AA 670
>seq169634
Length=720
Score = 187 bits (206), Expect = 3e-42
Identities = 316/458 (69%), Gaps = 0/458 (0%)
Strand=Plus/Plus
Query 8398 CCTAGAGGCATTCCATCAGAGAATGAACCCTGACCAAATGGATATACTAAGAACACTGCG 8457
||||||||||| |||||||| || || ||||||| ||| || | ||||| || ||
Sbjct 2 CCTAGAGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCA 61
Query 8458 AAAGCAGCAGATACTGGAGCACTATATGCTACACAGATCCATGGTCTCATACCTAAGCGG 8517
||||| | || | ||| |||||| ||| ||||| |||| |||||| | |||
Sbjct 62 GTTGCAGCTGCAACAGAAGCTGAATATGCAACAACAATCCAAGGTCGCATACCCAGACGG 121
Query 8518 TATGATAACTCCCACTGTCTACCCATGTAAGCAGAAATTCCAATAAGGAAGTGGAAGATA 8577
| | ||||||| | |||||||||| || | |||| | |||||| | | |
Sbjct 122 AAACTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACA 181
Query 8578 ACCAACTGATATGGACCTCCGTTATACAACCACTCATCTAATGTGGCAGCTTCCCAAATG 8637
| | | ||| ||||| || || || ||||| ||||| | | || |||||||| ||
Sbjct 182 ATTAGTTCATAAGGACCACCATTGTATAACCATTCATCAACGGATGCTGCTTCCCATATT 241
Query 8638 GGATAGAAGTGTAATCCAATAGCGTTGGAAGATGGAACGACAGCACCAGAGATGATGTTG 8697
|| || || || || || ||||| |||| |||| | |||| || || || |||
Sbjct 242 GGGTAAAAATGCAAACCTATAGCTGCAGAAGTAGGAATAATGACACCTGAAATAATATTG 301
Query 8698 TTTCCATACATGAATGAACCTGCAACAGGTTCACGAATACCGTCGATATCGACAGGTGGA 8757
|||||||| | | || || |||||||||||||||||| || ||||| || || |||
Sbjct 302 TTTCCATAACTTAGAGATCCATAAACAGGTTCACGAATACCATCAATATCCACTGGAGGA 361
Query 8758 GCAGCAATAAATGCCACGATAAAGCAAGTAGCAGCAGCTAACAAGCAAGGAATCATTAGA 8817
|||||||| || || | ||||| || || || | || ||| ||| ||||| | |
Sbjct 362 GCAGCAATGAAAGCGATAATAAATACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAA 421
Query 8818 ACTCCAAACCAACCGACATAAAGTCTGTTGTTTGTACT 8855
|| |||||||| || | ||||| | ||| | |||||
Sbjct 422 ACACCAAACCATCCAATGTAAAGACGGTTTTCGGTACT 459
>seq250312
Length=8481
Score = 167 bits (184), Expect = 3e-36
Identities = 320/465 (69%), Gaps = 15/465 (3%)
Strand=Plus/Minus
Query 7896 GTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAGTTTGCTCT 7955
||||| ||||| || || ||||| | ||||| ||||||||||||||| | ||| || |
Sbjct 2026 GTCTAGAGGGAAATTATGAGCATTACATTCATACATAACTTCCATACCAAGGTTAGCACA 1967
Query 7956 GTTTAATACGTCACCCCATGTAGGAATGATTTTACCATTAAC-ATCAACAACTGATTGGT 8014
||| | | ||| |||| ||| ||| | | | |||| || || || || ||||| |
Sbjct 1966 GTTAATGATATCAGCCCAAGTATTAATTACATGA-CATTGACTGTCGACTACAGATTGAT 1908
Query 8015 TAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTTAACCAAA 8074
|| |||| || || ||||| | ||||| |||| ||||| | | | ||||| |
Sbjct 1907 GGAAACTAAAACCATTTAGGTTGTAAGCCATAGTGCTGATACCTAACACAATAAACCAGA 1848
Query 8075 CACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTACTGTTGTT-AAACGAT 8133
| || | ||||| |||||||| || | | | |||||| |||| |
Sbjct 1847 TA---------GGCCAAGTAGCTAGGAAGAAATGTAAAAAACGTGAGTTGTTGAAACTA- 1798
Query 8134 GCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAGGTCTCT 8193
|||| ||||||| |||| |||||| || |||||||| || |||||||| || | |||
Sbjct 1797 GCATGTCGGAAGATCAATCGACCAAAATAACCATGAGCGGCTACAATATTCTAATTTTCT 1738
Query 8194 TCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTC-TTCTTCAGTTGTCTCTCTGAT 8252
|||||||||| || ||||||| | || | || ||||| || || || |||||
Sbjct 1737 CCTTCTTGACCGAATATATAACCTTCATTAGCTTATTCATTCTT-TGTGGTTTCCCTGAT 1679
Query 8253 TAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAACATACC 8312
| | || || || || ||||| ||||||||||||| || || | || | | |||
Sbjct 1678 CAAACTAGGGGTTACCAAGGAACCACGCATAGCACTGAATAGGGAGCTGCCAATTACACC 1619
Query 8313 TGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTC 8357
||||| ||| ||| || || | ||| |||||||||| |||||
Sbjct 1618 AGCTACGCCTAGCATGTGAAATGAGTGCCTAAGAATGTTGTGCTC 1574
>seq10884
Length=5042
Score = 149 bits (164), Expect = 8e-31
Identities = 130/162 (80%), Gaps = 0/162 (0%)
Strand=Plus/Minus
Query 8259 AGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAACATACCTGCTAC 8318
||| || || | ||||| || |||||| |||| || || || ||||| | ||| |||||
Sbjct 3950 AGAGGTTACCGAGGAACCATGTATAGCAATGAATAGGGAGCCGCCGAATACACCAGCTAC 3891
Query 8319 CCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAATACGAACATGAA 8378
||| ||| || || || |||||||||||||| ||||| || |||||||| | ||||||
Sbjct 3890 GCCTAGCATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGCCTGGAATACAATCATGAA 3831
Query 8379 GTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAA 8420
||| || ||||||||||| ||||||||||| |||||||| ||
Sbjct 3830 GTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAA 3789
>seq8631
Length=609
Score = 147 bits (162), Expect = 3e-30
Identities = 128/158 (81%), Gaps = 1/158 (1%)
Strand=Plus/Plus
Query 8259 AGATGTAACTAAAGAACCGTGCATAGCACTGAAG-AGTGATCCACCGAACATACCTGCTA 8317
||| || || || ||||| |||||||||||||| || || || ||||| | ||| ||||
Sbjct 173 AGAGGTTACCAAGGAACCATGCATAGCACTGAATTAGGGAGCCGCCGAATACACCAGCTA 232
Query 8318 CCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAATACGAACATGA 8377
| || ||| || || || |||||||||||||| ||||| || |||||||| | |||||
Sbjct 233 CGTCTAGCATGTGAAATGGGTGCATAAGAATGTTGTGCTCGGCCTGGAATACAATCATGA 292
Query 8378 AGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCA 8415
|||| || ||||||||||| ||||||||||| ||||||
Sbjct 293 AGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCA 330
>seq231965
Length=7494
Score = 84.2 bits (92), Expect = 3e-11
Identities = 102/139 (73%), Gaps = 0/139 (0%)
Strand=Plus/Minus
Query 8315 CTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAATACGAACA 8374
|||| ||| ||| | || || |||||||||||||| ||||| | | ||||| | ||
Sbjct 6768 CTACGCCTAGCATGTAAAATGGGTGCATAAGAATGTTGTGCTCAACCTTAAATACAATCA 6709
Query 8375 TGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACCCTGACCAA 8434
||||||| || |||||| |||| |||||||| || |||| ||| || | |||| ||
Sbjct 6708 TGAAGTTGAAAGTACCATAAATTCCTAGAGGAATACCATGAGAAAAGCTTCATTGACAAA 6649
Query 8435 ATGGATATACTAAGAACAC 8453
||| || | ||||| ||
Sbjct 6648 TTGGGTAGATCAAGAAAAC 6630
>seq92275
Length=5108
Score = 82.4 bits (90), Expect = 9e-11
Identities = 110/153 (72%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 8680 GCACCAGAGATGATGTTGTTTCCATACATGAATGAACCTGCAACAGGTTCACGAATACCG 8739
||||| ||||| || || ||| | || | | || || | ||||||||||||||||||
Sbjct 4637 GCACCCGAGATAATATTATTTTCGTAAAGTAGAGATCCAGAAACAGGTTCACGAATACCA 4696
Query 8740 TCGATATCGACAGGTGGAGCAGCAATAAATGCCACGATAAAGCAAGTAGCAGCAGCTAAC 8799
|| ||||| || || |||||| |||| || || | ||||| || || || | ||
Sbjct 4697 TCAATATCTACTGGAGGAGCATCAATGAAGGCAATAATAAATACAGAAGTTGCGGTCAAT 4756
Query 8800 AAGCAAGGAATCATTAGAACTCCAAACCAACCG 8832
| | ||| ||||| | ||| |||||||| |||
Sbjct 4757 AGGGTAGGGATCATCAAAACACCAAACCATCCG 4789
>seq36621
Length=13842
Score = 82.4 bits (90), Expect = 9e-11
Identities = 210/310 (68%), Gaps = 11/310 (4%)
Strand=Plus/Plus
Query 7891 GCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAGTTT 7950
|| ||||||| ||| | || || ||||| | |||||||||||| | |||| | | |||
Sbjct 7665 GCCAAGTCTAGAGGGGAATTATGAGCATTACGTTCATGCATAACATTCATAACAAGGTTA 7724
Query 7951 GCTCTGTTTAAT-ACGTCACCCCATGTAGGAATGATTTTAC--CATTAAC-ATCAACAAC 8006
|| || ||| | | ||||| || || | | ||| || | | || |||||| ||
Sbjct 7725 GC-ATGGTTACTGATATCACCTCA---AGTATTCATTACACGGCTGTGACTATCAACTAC 7780
Query 8007 TGATTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGT 8066
||||||| || | || || ||||| || ||||| ||| | |||||| | |||
Sbjct 7781 CAATTGGTTTCGATTTCAACCATTTAGGTTGAAAGCCATAATGCTAGTACCCAACGCAGT 7840
Query 8067 TAACCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTACTGTTGTT 8126
||||| | || | ||| || | | ||| || || || | | | | || |||
Sbjct 7841 GAACCATATACCAAAAACAGGCCAAGCAGCTAGAAAAAAATATATAAAATGAGAGTCGTT 7900
Query 8127 -AAACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTAT 8185
|||| | ||||| | |||||| |||| ||||| || ||||||||| || |||||||
Sbjct 7901 GAAACTA-GCATATTAGAAGATCAATCAGCCAAA-TAACCATGAGCATATACGATATTAT 7958
Query 8186 AGGTCTCTTC 8195
| || |||||
Sbjct 7959 AAGTTTCTTC 7968
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 612291121718320
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