Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq107965 293 3e-74 seq300680 206 3e-48 seq169634 187 3e-42 seq250312 167 3e-36 seq10884 149 8e-31 seq8631 147 3e-30 seq231965 84.2 3e-11 seq92275 82.4 9e-11 seq36621 82.4 9e-11 >seq107965 Length=6474 Score = 293 bits (324), Expect = 3e-74 Identities = 418/586 (71%), Gaps = 2/586 (0%) Strand=Plus/Minus Query 8121 GTTGTT-AAACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAA 8179 |||||| |||| | ||||| |||||||| |||| ||||| || |||||| | || || | Sbjct 6460 GTTGTTGAAACTA-GCATATTGGAAGATCAATCGGCCAAAATAACCATGAACGGCTACGA 6402 Query 8180 TATTATAGGTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAG 8239 ||||||| || || |||||| ||||||| | ||||| | || ||| | | ||| | Sbjct 6401 TATTATAAGTTTCATCTTCTAGACCAAATCTGTAACCTTCATTAGCAGATTTATTTTCTG 6342 Query 8240 TTGTCTCTCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATC 8299 | || || ||||| | | |||| || || || ||||| |||||||||||||| || || | Sbjct 6341 TGGTTTCCCTGATCAAACAAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGC 6282 Query 8300 CACCGAACATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTG 8359 | |||| | ||| ||||| ||| ||| || || || |||||||||||||| ||||| | Sbjct 6281 CGCCGATTACACCAGCTACACCTAGCATGTGAAATGGGTGCATAAGAATGTTGTGCTCAG 6222 Query 8360 CTTGGAATACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGA 8419 | |||||||| | ||||||||| || ||||||||||| ||||||||||| |||||||| | Sbjct 6221 CCTGGAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAA 6162 Query 8420 ATGAACCCTGACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCAC 8479 | || ||||||| ||| || | ||||| || | ||||| | || ||||| Sbjct 6161 AGCTTCCTTGACCAATTGGGTAGATCAAGAAAACAACACTCGCAGCTGCAACAGGAGCTG 6102 Query 8480 TATATGCTACACAGATCCATGGTCTCATACCTAAGCGGTATGATAACTCCCACTGTCTAC 8539 |||||| ||| ||||| | || |||||| | || | | ||||||| | || Sbjct 6101 AATATGCAACAACCATCCAAGTTCGCATACCCAGACGAAAACTAAGTTCCCACTCACGAC 6042 Query 8540 CCATGTAAGCAGAAATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCCGT 8599 |||||||| || | |||| | |||||| | | || | | ||| ||||| || | Sbjct 6041 CCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCAT 5982 Query 8600 TATACAACCACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATAG 8659 | || ||||| ||||| | | | |||||||| || || || || || || || |||| Sbjct 5981 TGTATAACCATTCATCAACAGATGTTGCTTCCCATATTGGGTAAAAATGCAAACCTATAG 5922 Query 8660 CGTTGGAAGATGGAACGACAGCACCAGAGATGATGTTGTTTCCATA 8705 | ||| |||| | | ||| | || || ||||||||||| Sbjct 5921 CTGCAGAAATAGGAATAATGGTACCTAAAATAATATTGTTTCCATA 5876 >seq300680 Length=3790 Score = 206 bits (228), Expect = 3e-48 Identities = 230/302 (76%), Gaps = 4/302 (1%) Strand=Plus/Plus Query 8121 GTTGTT-AAACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAA 8179 |||||| |||| | ||||||||||||| |||| ||||| || |||||||| || || | Sbjct 371 GTTGTTGAAACTA-GCATACTGGAAGACCAATCGGCCAAAATAACCATGAGCGGCTACGA 429 Query 8180 TATTATAGGTCT-CTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCA 8238 ||||||| || | ||||||||||||| || || ||||| | || | | || | ||| Sbjct 430 TATTATAAGTTTTCTTCTTCTTGACCGAATTTGTAACCTTCATTAGCAAATTCATTTTCT 489 Query 8239 GTTGTCTCTCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGAT 8298 | || || ||||||| | ||| || || || ||||| ||||||||| | || || || Sbjct 490 CTGGTTTC-CTGATTAAACTAGAGGTTACCAAGGAACCATGCATAGCATTAAATAGGGAG 548 Query 8299 CCACCGAACATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCT 8358 | ||| | ||| ||||| | | ||| || || || |||||||||||||| ||||| Sbjct 549 CTGACGAGTACACCAGCTACGCTTAGCATGTGAAATGGGTGCATAAGAATGTTGTGCTCA 608 Query 8359 GCTTGGAATACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAG 8418 | |||||||| | ||||||||| || ||||||||||| ||||||||||| |||||||| Sbjct 609 ACCTGGAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAA 668 Query 8419 AA 8420 || Sbjct 669 AA 670 >seq169634 Length=720 Score = 187 bits (206), Expect = 3e-42 Identities = 316/458 (69%), Gaps = 0/458 (0%) Strand=Plus/Plus Query 8398 CCTAGAGGCATTCCATCAGAGAATGAACCCTGACCAAATGGATATACTAAGAACACTGCG 8457 ||||||||||| |||||||| || || ||||||| ||| || | ||||| || || Sbjct 2 CCTAGAGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCA 61 Query 8458 AAAGCAGCAGATACTGGAGCACTATATGCTACACAGATCCATGGTCTCATACCTAAGCGG 8517 ||||| | || | ||| |||||| ||| ||||| |||| |||||| | ||| Sbjct 62 GTTGCAGCTGCAACAGAAGCTGAATATGCAACAACAATCCAAGGTCGCATACCCAGACGG 121 Query 8518 TATGATAACTCCCACTGTCTACCCATGTAAGCAGAAATTCCAATAAGGAAGTGGAAGATA 8577 | | ||||||| | |||||||||| || | |||| | |||||| | | | Sbjct 122 AAACTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACA 181 Query 8578 ACCAACTGATATGGACCTCCGTTATACAACCACTCATCTAATGTGGCAGCTTCCCAAATG 8637 | | | ||| ||||| || || || ||||| ||||| | | || |||||||| || Sbjct 182 ATTAGTTCATAAGGACCACCATTGTATAACCATTCATCAACGGATGCTGCTTCCCATATT 241 Query 8638 GGATAGAAGTGTAATCCAATAGCGTTGGAAGATGGAACGACAGCACCAGAGATGATGTTG 8697 || || || || || || ||||| |||| |||| | |||| || || || ||| Sbjct 242 GGGTAAAAATGCAAACCTATAGCTGCAGAAGTAGGAATAATGACACCTGAAATAATATTG 301 Query 8698 TTTCCATACATGAATGAACCTGCAACAGGTTCACGAATACCGTCGATATCGACAGGTGGA 8757 |||||||| | | || || |||||||||||||||||| || ||||| || || ||| Sbjct 302 TTTCCATAACTTAGAGATCCATAAACAGGTTCACGAATACCATCAATATCCACTGGAGGA 361 Query 8758 GCAGCAATAAATGCCACGATAAAGCAAGTAGCAGCAGCTAACAAGCAAGGAATCATTAGA 8817 |||||||| || || | ||||| || || || | || ||| ||| ||||| | | Sbjct 362 GCAGCAATGAAAGCGATAATAAATACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAA 421 Query 8818 ACTCCAAACCAACCGACATAAAGTCTGTTGTTTGTACT 8855 || |||||||| || | ||||| | ||| | ||||| Sbjct 422 ACACCAAACCATCCAATGTAAAGACGGTTTTCGGTACT 459 >seq250312 Length=8481 Score = 167 bits (184), Expect = 3e-36 Identities = 320/465 (69%), Gaps = 15/465 (3%) Strand=Plus/Minus Query 7896 GTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAGTTTGCTCT 7955 ||||| ||||| || || ||||| | ||||| ||||||||||||||| | ||| || | Sbjct 2026 GTCTAGAGGGAAATTATGAGCATTACATTCATACATAACTTCCATACCAAGGTTAGCACA 1967 Query 7956 GTTTAATACGTCACCCCATGTAGGAATGATTTTACCATTAAC-ATCAACAACTGATTGGT 8014 ||| | | ||| |||| ||| ||| | | | |||| || || || || ||||| | Sbjct 1966 GTTAATGATATCAGCCCAAGTATTAATTACATGA-CATTGACTGTCGACTACAGATTGAT 1908 Query 8015 TAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTTAACCAAA 8074 || |||| || || ||||| | ||||| |||| ||||| | | | ||||| | Sbjct 1907 GGAAACTAAAACCATTTAGGTTGTAAGCCATAGTGCTGATACCTAACACAATAAACCAGA 1848 Query 8075 CACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTACTGTTGTT-AAACGAT 8133 | || | ||||| |||||||| || | | | |||||| |||| | Sbjct 1847 TA---------GGCCAAGTAGCTAGGAAGAAATGTAAAAAACGTGAGTTGTTGAAACTA- 1798 Query 8134 GCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAGGTCTCT 8193 |||| ||||||| |||| |||||| || |||||||| || |||||||| || | ||| Sbjct 1797 GCATGTCGGAAGATCAATCGACCAAAATAACCATGAGCGGCTACAATATTCTAATTTTCT 1738 Query 8194 TCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTC-TTCTTCAGTTGTCTCTCTGAT 8252 |||||||||| || ||||||| | || | || ||||| || || || ||||| Sbjct 1737 CCTTCTTGACCGAATATATAACCTTCATTAGCTTATTCATTCTT-TGTGGTTTCCCTGAT 1679 Query 8253 TAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAACATACC 8312 | | || || || || ||||| ||||||||||||| || || | || | | ||| Sbjct 1678 CAAACTAGGGGTTACCAAGGAACCACGCATAGCACTGAATAGGGAGCTGCCAATTACACC 1619 Query 8313 TGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTC 8357 ||||| ||| ||| || || | ||| |||||||||| ||||| Sbjct 1618 AGCTACGCCTAGCATGTGAAATGAGTGCCTAAGAATGTTGTGCTC 1574 >seq10884 Length=5042 Score = 149 bits (164), Expect = 8e-31 Identities = 130/162 (80%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 8259 AGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAACATACCTGCTAC 8318 ||| || || | ||||| || |||||| |||| || || || ||||| | ||| ||||| Sbjct 3950 AGAGGTTACCGAGGAACCATGTATAGCAATGAATAGGGAGCCGCCGAATACACCAGCTAC 3891 Query 8319 CCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAATACGAACATGAA 8378 ||| ||| || || || |||||||||||||| ||||| || |||||||| | |||||| Sbjct 3890 GCCTAGCATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGCCTGGAATACAATCATGAA 3831 Query 8379 GTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAA 8420 ||| || ||||||||||| ||||||||||| |||||||| || Sbjct 3830 GTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAA 3789 >seq8631 Length=609 Score = 147 bits (162), Expect = 3e-30 Identities = 128/158 (81%), Gaps = 1/158 (1%) Strand=Plus/Plus Query 8259 AGATGTAACTAAAGAACCGTGCATAGCACTGAAG-AGTGATCCACCGAACATACCTGCTA 8317 ||| || || || ||||| |||||||||||||| || || || ||||| | ||| |||| Sbjct 173 AGAGGTTACCAAGGAACCATGCATAGCACTGAATTAGGGAGCCGCCGAATACACCAGCTA 232 Query 8318 CCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAATACGAACATGA 8377 | || ||| || || || |||||||||||||| ||||| || |||||||| | ||||| Sbjct 233 CGTCTAGCATGTGAAATGGGTGCATAAGAATGTTGTGCTCGGCCTGGAATACAATCATGA 292 Query 8378 AGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCA 8415 |||| || ||||||||||| ||||||||||| |||||| Sbjct 293 AGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCA 330 >seq231965 Length=7494 Score = 84.2 bits (92), Expect = 3e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 8315 CTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAATACGAACA 8374 |||| ||| ||| | || || |||||||||||||| ||||| | | ||||| | || Sbjct 6768 CTACGCCTAGCATGTAAAATGGGTGCATAAGAATGTTGTGCTCAACCTTAAATACAATCA 6709 Query 8375 TGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACCCTGACCAA 8434 ||||||| || |||||| |||| |||||||| || |||| ||| || | |||| || Sbjct 6708 TGAAGTTGAAAGTACCATAAATTCCTAGAGGAATACCATGAGAAAAGCTTCATTGACAAA 6649 Query 8435 ATGGATATACTAAGAACAC 8453 ||| || | ||||| || Sbjct 6648 TTGGGTAGATCAAGAAAAC 6630 >seq92275 Length=5108 Score = 82.4 bits (90), Expect = 9e-11 Identities = 110/153 (72%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 8680 GCACCAGAGATGATGTTGTTTCCATACATGAATGAACCTGCAACAGGTTCACGAATACCG 8739 ||||| ||||| || || ||| | || | | || || | |||||||||||||||||| Sbjct 4637 GCACCCGAGATAATATTATTTTCGTAAAGTAGAGATCCAGAAACAGGTTCACGAATACCA 4696 Query 8740 TCGATATCGACAGGTGGAGCAGCAATAAATGCCACGATAAAGCAAGTAGCAGCAGCTAAC 8799 || ||||| || || |||||| |||| || || | ||||| || || || | || Sbjct 4697 TCAATATCTACTGGAGGAGCATCAATGAAGGCAATAATAAATACAGAAGTTGCGGTCAAT 4756 Query 8800 AAGCAAGGAATCATTAGAACTCCAAACCAACCG 8832 | | ||| ||||| | ||| |||||||| ||| Sbjct 4757 AGGGTAGGGATCATCAAAACACCAAACCATCCG 4789 >seq36621 Length=13842 Score = 82.4 bits (90), Expect = 9e-11 Identities = 210/310 (68%), Gaps = 11/310 (4%) Strand=Plus/Plus Query 7891 GCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAGTTT 7950 || ||||||| ||| | || || ||||| | |||||||||||| | |||| | | ||| Sbjct 7665 GCCAAGTCTAGAGGGGAATTATGAGCATTACGTTCATGCATAACATTCATAACAAGGTTA 7724 Query 7951 GCTCTGTTTAAT-ACGTCACCCCATGTAGGAATGATTTTAC--CATTAAC-ATCAACAAC 8006 || || ||| | | ||||| || || | | ||| || | | || |||||| || Sbjct 7725 GC-ATGGTTACTGATATCACCTCA---AGTATTCATTACACGGCTGTGACTATCAACTAC 7780 Query 8007 TGATTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGT 8066 ||||||| || | || || ||||| || ||||| ||| | |||||| | ||| Sbjct 7781 CAATTGGTTTCGATTTCAACCATTTAGGTTGAAAGCCATAATGCTAGTACCCAACGCAGT 7840 Query 8067 TAACCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTACTGTTGTT 8126 ||||| | || | ||| || | | ||| || || || | | | | || ||| Sbjct 7841 GAACCATATACCAAAAACAGGCCAAGCAGCTAGAAAAAAATATATAAAATGAGAGTCGTT 7900 Query 8127 -AAACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTAT 8185 |||| | ||||| | |||||| |||| ||||| || ||||||||| || ||||||| Sbjct 7901 GAAACTA-GCATATTAGAAGATCAATCAGCCAAA-TAACCATGAGCATATACGATATTAT 7958 Query 8186 AGGTCTCTTC 8195 | || ||||| Sbjct 7959 AAGTTTCTTC 7968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 612291121718320