Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_020865.1 Length=45730 Score E Sequences producing significant alignments: (Bits) Value seq107965 297 6e-76 seq169634 199 1e-46 seq250312 152 1e-32 seq300680 149 2e-31 seq10884 116 1e-21 seq36621 114 4e-21 seq8631 104 7e-18 seq231965 100 8e-17 seq254652 87.8 5e-13 seq264332 82.4 2e-11 >seq107965 Length=6474 Score = 297 bits (328), Expect = 6e-76 Identities = 424/597 (71%), Gaps = 0/597 (0%) Strand=Plus/Plus Query 41396 CTGTTGTATGGTAACAACATCATATCAGGAGCCGTCGTTCCGAGCAGTAATGCCATCGGA 41455 ||| | ||||| ||||| || || | ||| || | |||| | | || || || Sbjct 5870 CTGCTTTATGGAAACAATATTATTTTAGGTACCATTATTCCTATTTCTGCAGCTATAGGT 5929 Query 41456 CTACACTTCTACCCAATTTGGGAAGCTGCTACACTTGATGAATGGCTGTACAACGGCGGT 41515 | || || |||||||| |||||||| | | ||||||||||| | ||||| || ||| Sbjct 5930 TTGCATTTTTACCCAATATGGGAAGCAACATCTGTTGATGAATGGTTATACAATGGTGGT 5989 Query 41516 CCATTCCAACTCACCGTATTCCACTTCCTCATTGGCGTCTTTGCTTACATGGGACGAGAG 41575 || | |||| | || | |||||| | |||| || | ||||||||| || ||| Sbjct 5990 CCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAG 6049 Query 41576 TGGGAACTTAGCTATCGACTAGGGATGAGGCCCTGGATCTTTGTTGCGTACTCTGCTCCT 41635 ||||||||||| | ||| || || ||| | | ||||| ||||||| || || |||||| Sbjct 6050 TGGGAACTTAGTTTTCGTCTGGGTATGCGAACTTGGATGGTTGTTGCATATTCAGCTCCT 6109 Query 41636 GTCGCCGCTGCGACTGCTGTGTTCCTTGTTTATCCGTTTGGACAGGGCTCTTTTTCTGAT 41695 || || ||||||| || ||| ||| | | || || |||| || || ||||||||| Sbjct 6110 GTTGCAGCTGCGAGTGTTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGAT 6169 Query 41696 GCTATGCCCTTGGGGATATCCGGCACCTTCAACTACATGCTGGTGTTCCAGGCTGAGCAC 41755 | |||||| | || || || || || ||||||| |||| | || ||||||||||||||| Sbjct 6170 GGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCAC 6229 Query 41756 AATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGCCGGCGTATTTGGTGGGAGTTTG 41815 || ||||||||||| || ||||||||||| ||||| || || ||| | || || | Sbjct 6230 AACATTCTTATGCACCCATTTCACATGCTAGGTGTAGCTGGTGTAATCGGCGGCTCCCTA 6289 Query 41816 TTCTCTGCTATGCACGGTAGCCTGGTCACGTCGTCACTCATTCGTGAGACGACTGAAGAG 41875 ||| ||||||||| ||| | |||| || || | | || | || || || ||| | Sbjct 6290 TTCAGTGCTATGCATGGTTCCTTGGTAACCTCTTGTTTGATCAGGGAAACCACAGAAAAT 6349 Query 41876 GTTTCACAGAACTATGGTTACAAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCT 41935 || || | ||||||| ||||||| ||| || || ||||| ||||| || || Sbjct 6350 AAATCTGCTAATGAAGGTTACAGATTTGGTCTAGAAGATGAAACTTATAATATCGTAGCC 6409 Query 41936 GCTCACGGCTATTTTGGTCGGCTTATCTTCCAATATGCTAGCTTTAATAATTCCCGT 41992 | ||| || |||||||| || | ||||||||||||||||| || || || || ||| Sbjct 6410 GTTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGT 6466 >seq169634 Length=720 Score = 199 bits (220), Expect = 1e-46 Identities = 312/444 (70%), Gaps = 2/444 (0%) Strand=Plus/Minus Query 41261 AACCGTCTTTATGTAGGATGGTTCGGAGTCCTTATGATTCCGTGCCTCCTTG-CCGCTAC 41319 ||||||||||| | |||||||| || || | ||||| || | ||| ||| |||| || Sbjct 450 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCC-TACCTTATTGACCGCAAC 392 Query 41320 AACTTGTTTTATTATCGCCTTTGTTGGCGCACCACCTGTTGACATCGATGGAATCCGAGA 41379 || ||||||||||| || ||| || || || || || || ||||| || || || Sbjct 391 TTCTGTATTTATTATCGCTTTCATTGCTGCTCCTCCAGTGGATATTGATGGTATTCGTGA 332 Query 41380 ACCCGTCGCTGGCTCCCTGTTGTATGGTAACAACATCATATCAGGAGCCGTCGTTCCGAG 41439 ||| || ||| || || ||||| ||||| || || ||||| | | | |||| | Sbjct 331 ACCTGTTTATGGATCTCTAAGTTATGGAAACAATATTATTTCAGGTGTCATTATTCCTAC 272 Query 41440 CAGTAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTGCTACACTTGATGAATG 41499 | || || || | || || |||||||| |||||||| || | |||||||||| Sbjct 271 TTCTGCAGCTATAGGTTTGCATTTTTACCCAATATGGGAAGCAGCATCCGTTGATGAATG 212 Query 41500 GCTGTACAACGGCGGTCCATTCCAACTCACCGTATTCCACTTCCTCATTGGCGTCTTTGC 41559 | | ||||| || ||||| | |||| | || | |||||| | |||| || | Sbjct 211 GTTATACAATGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTG 152 Query 41560 TTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGGATGAGGCCCTGGATCTTTGT 41619 ||||||||| || |||||||||||||| | || || || ||| | || ||||| |||| Sbjct 151 TTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGACCTTGGATTGTTGT 92 Query 41620 TGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTTATCCGTTTGGACA 41679 ||| || || ||| |||| || ||||| |||||||| ||| | | || || |||| || Sbjct 91 TGCATATTCAGCTTCTGTTGCAGCTGCAACTGCTGTTTTCTTGATCTACCCAATTGGTCA 32 Query 41680 GGGCTCTTTTTCTGATGCTATGCC 41703 || |||||||||| |||||| Sbjct 31 AGGAAGCTTTTCTGATGGTATGCC 8 >seq250312 Length=8481 Score = 152 bits (168), Expect = 1e-32 Identities = 313/467 (67%), Gaps = 9/467 (2%) Strand=Plus/Plus Query 41745 AGGCTGAGCACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGCCGGCGTATTTG 41804 ||| ||||||||| ||||||| ||| | ||||||||||| || || || || ||| ||| Sbjct 1569 AGGTTGAGCACAACATTCTTAGGCACTCATTTCACATGCTAGGCGTAGCTGGTGTAATTG 1628 Query 41805 GTGGGAGTTTGTTCTCTGCTATGCACGGTAGCCTGGTCACGTCGTCACTCATTCGTGAGA 41864 | | | ||| |||||||| ||| | |||| || | | || | || | Sbjct 1629 GCAGCTCCCTATTCAGTGCTATGCGTGGTTCCTTGGTAACCCCTAGTTTGATCAGGGAAA 1688 Query 41865 CGACTGAAGAGGTTTCACAGAACTATGGTTACAAGTTTGGTCAAGAGGAAGAGACTTACA 41924 | || | | | | | || | ||||| | || |||||||| | ||| | ||| | Sbjct 1689 CCACAAAGAATGAATAAGCTAATGAAGGTTATATATTCGGTCAAGAAGGAGAAAATTAGA 1748 Query 41925 ATATTGTTGCTGCTCACGGCTATTTTGGTCGGCTTATCTTCCAATATGCTAGCTTTAATA 41984 ||||||| || ||||| || ||||||||||| | ||||||| | ||||||| || || | Sbjct 1749 ATATTGTAGCCGCTCATGGTTATTTTGGTCGATTGATCTTCCGACATGCTAGTTTCAACA 1808 Query 41985 ATTCCCGTAGTCTTCATTTCTTTCTTGCTGCCTGGCCTGTTGTAGGTATTTGGTTTGCTG 42044 | || ||| | | |||||||| || ||| | ||||| ||| |||||| || Sbjct 1809 ACTCACGTTTTTTACATTTCTTCCTAGCTACTTGGCC---------TATCTGGTTTATTG 1859 Query 42045 CGCTTGGCGTGTCTACCATGGCTTTCAACTTGAATGGTTTCAACTTTAACCAATCTCTGC 42104 | | || | || ||||||| |||| | |||||||| | || | |||||| | Sbjct 1860 TGTTAGGTATCAGCACTATGGCTTACAACCTAAATGGTTTTAGTTTCCATCAATCTGTAG 1919 Query 42105 TAGCTGCTGATGGACAGGTGATCAACACCTGGGCTGACATTCTTAACCGTGCCAACCTTG 42164 | | | | | || || || || || |||||||| || ||||| |||| ||||||| Sbjct 1920 TCGACAGTCAATGTCATGTAATTAATACTTGGGCTGATATCATTAACTGTGCTAACCTTG 1979 Query 42165 GCTTTGAGGTGATGCATGAGCGGAACGCACACAACTTCCCGCTTGAC 42211 | | || || ||| |||| | || || || || ||||| || ||| Sbjct 1980 GTATGGAAGTTATGTATGAATGTAATGCTCATAATTTCCCTCTAGAC 2026 >seq300680 Length=3790 Score = 149 bits (164), Expect = 2e-31 Identities = 226/319 (71%), Gaps = 2/319 (1%) Strand=Plus/Minus Query 41687 TTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTACATGCTGGTGTTCCAG 41746 |||||||||| |||||| | || || || || || ||||||| |||| | || |||||| Sbjct 670 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 611 Query 41747 GCTGAGCACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGCCGGCGTATTTGGT 41806 | ||||||||| ||||||||||| || ||||||||||| | || || || ||| | | Sbjct 610 GTTGAGCACAACATTCTTATGCACCCATTTCACATGCTAAGCGTAGCTGGTGTACTCGTC 551 Query 41807 GGGAGTTTGTTCTCTGCTATGCACGGTAGCCTGGTCACGTCGTCACTCATTCGTGAGACG 41866 | | || ||||||||| ||| | |||| || || | | | || || || Sbjct 550 AGCTCCCTATTTAATGCTATGCATGGTTCCTTGGTAACCTC-TAGTTTAATCAGGAAACC 492 Query 41867 ACTGAAGAGGTTTCACAGAACTATGGTTACAAGTTTGGTCAAGAGGAAG-AGACTTACAA 41925 | ||| | | | || | |||||||| || |||||||| |||| | ||||| || Sbjct 491 AGAGAAAATGAATTTGCTAATGAAGGTTACAAATTCGGTCAAGAAGAAGAAAACTTATAA 432 Query 41926 TATTGTTGCTGCTCACGGCTATTTTGGTCGGCTTATCTTCCAATATGCTAGCTTTAATAA 41985 ||| || || ||||| || |||||||| || | ||||||| |||||||| || || || Sbjct 431 TATCGTAGCCGCTCATGGTTATTTTGGCCGATTGGTCTTCCAGTATGCTAGTTTCAACAA 372 Query 41986 TTCCCGTAGTCTTCATTTC 42004 || ||| | | |||||| Sbjct 371 CTCTCGTTCTTTACATTTC 353 >seq10884 Length=5042 Score = 116 bits (128), Expect = 1e-21 Identities = 99/122 (81%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 41687 TTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTACATGCTGGTGTTCCAG 41746 |||||||||| |||||| | || || || || || ||||||| |||| | || |||||| Sbjct 3789 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 3848 Query 41747 GCTGAGCACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGCCGGCGTATTTGGT 41806 ||||||||||| ||||||||||| || ||||||||||| || || || || ||||| || Sbjct 3849 GCTGAGCACAACATTCTTATGCACCCATTTCACATGCTAGGCGTAGCTGGTGTATTCGGC 3908 Query 41807 GG 41808 || Sbjct 3909 GG 3910 >seq36621 Length=13842 Score = 114 bits (126), Expect = 4e-21 Identities = 215/308 (70%), Gaps = 15/308 (5%) Strand=Plus/Minus Query 41911 GGAAGAGACTTACAATATTGTTGCTGCTCACGGCTATTTTGGTCGGCTTATCTTCCAATA 41970 |||||| ||||| ||||| || |||||| || ||||| | | | | |||||| |||| Sbjct 7969 GGAAGAAACTTATAATATCGTATATGCTCATGGTTATTTGGCT-GATTGATCTTCTAATA 7911 Query 41971 TGCTAGCTTTAATAATTCCCGTAGTCTTCATTTCTTTCTTGCTGCCTGGCCTGTTGTAGG 42030 |||||| || || | || | | | | |||| ||||| ||||| ||||||||| | || Sbjct 7910 TGCTAGTTTCAACGACTCTCATTTTATATATTTTTTTCTAGCTGCTTGGCCTGTTTTTGG 7851 Query 42031 TATTTGGTTTGCTGCGCTTGGCGTGTCTACCAT---GGCTTTCAACTTGAATGGTTTCAA 42087 ||| ||||| ||||| |||| || ||| ||| |||||||||| | ||||||| || Sbjct 7850 TATATGGTTCACTGCG-TTGG-GTA-CTAGCATTATGGCTTTCAACCTAAATGGTTGAAA 7794 Query 42088 CTTTAACCAATCTCTGCTAGCTGCTGATGGACAG----GTGATCAACACCTGGGCTGACA 42143 ||||||| || ||| || | | |||| || || || || || | ||| | Sbjct 7793 TCGAAACCAAT---TGGTAGTTGAT-AGTCACAGCCGTGTAATGAATACTTGAGGTGATA 7738 Query 42144 TTCTTAACCGTGCCAACCTTGGCTTTGAGGTGATGCATGAGCGGAACGCACACAACTTCC 42203 | ||||| ||| ||||||| | | || |||||||| || || || || || | || Sbjct 7737 TCAGTAACCATGCTAACCTTGTTATGAATGTTATGCATGAACGTAATGCTCATAATTCCC 7678 Query 42204 CGCTTGAC 42211 | || ||| Sbjct 7677 CTCTAGAC 7670 >seq8631 Length=609 Score = 104 bits (114), Expect = 7e-18 Identities = 121/162 (75%), Gaps = 1/162 (1%) Strand=Plus/Minus Query 41687 TTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTACATGCTGGTGTTCCAG 41746 |||| ||||| |||||| | || || || || || ||||||| |||| | || |||||| Sbjct 335 TTTTTTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 276 Query 41747 GCTGAGCACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGCCGGCGTATTTGGT 41806 || |||||||| ||||||||||| || ||||||||||| | || || || ||||| || Sbjct 275 GCCGAGCACAACATTCTTATGCACCCATTTCACATGCTAGACGTAGCTGGTGTATTCGGC 216 Query 41807 GG-GAGTTTGTTCTCTGCTATGCACGGTAGCCTGGTCACGTC 41847 || | ||| ||||||||| ||| | |||| || || Sbjct 215 GGCTCCCTAATTCAGTGCTATGCATGGTTCCTTGGTAACCTC 174 Score = 86.0 bits (94), Expect = 2e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 41459 CACTTCTACCCAATTTGGGAAGCTGCTACACTTGATGAATGGCTGTACAACGGCGGTCCA 41518 || || |||||||| |||||||| || | ||||||||||| | ||||| || ||||| Sbjct 497 CATTTTTACCCAATATGGGAAGCAGCATCCATTGATGAATGGTTATACAATGGTGGTCCT 438 Query 41519 TTCCAACTCACCGTATTCCACTTCCTCATTGGCGTCTTTGCTTACATGGGACGAGAGTGG 41578 | |||| | || | |||||| | |||| || | ||||||||| || |||||| Sbjct 437 TATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGG 378 Query 41579 GAACTTAGCTATCGACTAGGGATGAGGCCCTGGAT 41613 |||||||| | || || | ||| | || ||||| Sbjct 377 GAACTTAGTTTCCGTCTGGATATGCGCCCTTGGAT 343 >seq231965 Length=7494 Score = 100 bits (110), Expect = 8e-17 Identities = 139/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 41606 CCCTGGATCTTTGTTGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTT 41665 || ||||| ||||||| || | |||| ||| || ||||||||| ||| ||| | | Sbjct 6582 CCTTGGATTATTGTTGCATATCCAGCTCTTGTTGCAACTGCGACTGATGTTTTCTTGATC 6641 Query 41666 TATCCGTTTGGACAGGGCTCTTTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTC 41725 || || || | || | |||||| ||| ||| || | || || | || || ||| Sbjct 6642 TACCCAATTTGTCAATGAAGCTTTTCTCATGGTATTCCTCTAGGAATTTATGGTACTTTC 6701 Query 41726 AACTACATGCTGGTGTTCCAGGCTGAGCACAATATTCTTATGCATCCTTTTCACATGCTG 41785 |||| |||| | || || ||| ||||||||| ||||||||||| || ||| ||||||| Sbjct 6702 AACTTCATGATTGTATTTAAGGTTGAGCACAACATTCTTATGCACCCATTTTACATGCTA 6761 Query 41786 GGTGTGGCCGGCGTA 41800 || || | ||| ||| Sbjct 6762 GGCGTAGACGGTGTA 6776 >seq254652 Length=6058 Score = 87.8 bits (96), Expect = 5e-13 Identities = 170/250 (68%), Gaps = 1/250 (0%) Strand=Plus/Plus Query 41402 TATGGTAACAACATCATATCAGGAGCCGTCGTTCCGAGCAGTAATGCCATCGGACTACAC 41461 ||||| ||||| || || ||||| | || |||| | || || | || | || Sbjct 711 TATGGAAACAATATTATTTCAGGTGTTGTTATTCCTACTTCTACAGCTACAGGTTTGCAT 770 Query 41462 TTCTACCCAATTTGGGAAGCTGCTACACTTGATGAATGGCTG-TACAACGGCGGTCCATT 41520 || |||| ||| | |||||| | ||||||||||| | ||||| || ||||| | Sbjct 771 TTTTACCTAATATAGGAAGCAACATTTGTTGATGAATGGTTTATACAATGGTGGTCCTTA 830 Query 41521 CCAACTCACCGTATTCCACTTCCTCATTGGCGTCTTTGCTTACATGGGACGAGAGTGGGA 41580 |||| | ||| | |||||| | |||| || ||||||||| || |||||||| Sbjct 831 TGAACTAATTGTACTACACTTCTTACTTGGTGTAGCGTGTTACATGGGTCGCGAGTGGGA 890 Query 41581 ACTTAGCTATCGACTAGGGATGAGGCCCTGGATCTTTGTTGCGTACTCTGCTCCTGTCGC 41640 |||||| | || || || || | || | ||| ||||||| || || |||||| | | Sbjct 891 ACTTAGTTTCCGTCTGGGTGTGCGACCTTTGATTGTTGTTGCATATTCAGCTCCTATTAC 950 Query 41641 CGCTGCGACT 41650 ||||||||| Sbjct 951 AGCTGCGACT 960 >seq264332 Length=996 Score = 82.4 bits (90), Expect = 2e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 41949 TTGGTCGGCTTATCTTCCAATATGCTAGCTTTAATAATTCCCGTAGTCTTCATTTCTTTC 42008 |||| || | ||||||||||||||||| || || || || ||| | | |||||||| | Sbjct 274 TTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCC 215 Query 42009 TTGCTGCCTGGCCTGTTGTAGGTATTTGGTTTGCTGCG 42046 | ||||| |||||||| ||||| || ||||| ||||| Sbjct 214 TAGCTGCTTGGCCTGTAGTAGGCATCTGGTTCACTGCG 177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145408921867824