Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27]
463,906 sequences; 661,937,708 total letters
Query= NC_020865.1
Length=45730
Score E
Sequences producing significant alignments: (Bits) Value
seq107965 297 6e-76
seq169634 199 1e-46
seq250312 152 1e-32
seq300680 149 2e-31
seq10884 116 1e-21
seq36621 114 4e-21
seq8631 104 7e-18
seq231965 100 8e-17
seq254652 87.8 5e-13
seq264332 82.4 2e-11
>seq107965
Length=6474
Score = 297 bits (328), Expect = 6e-76
Identities = 424/597 (71%), Gaps = 0/597 (0%)
Strand=Plus/Plus
Query 41396 CTGTTGTATGGTAACAACATCATATCAGGAGCCGTCGTTCCGAGCAGTAATGCCATCGGA 41455
||| | ||||| ||||| || || | ||| || | |||| | | || || ||
Sbjct 5870 CTGCTTTATGGAAACAATATTATTTTAGGTACCATTATTCCTATTTCTGCAGCTATAGGT 5929
Query 41456 CTACACTTCTACCCAATTTGGGAAGCTGCTACACTTGATGAATGGCTGTACAACGGCGGT 41515
| || || |||||||| |||||||| | | ||||||||||| | ||||| || |||
Sbjct 5930 TTGCATTTTTACCCAATATGGGAAGCAACATCTGTTGATGAATGGTTATACAATGGTGGT 5989
Query 41516 CCATTCCAACTCACCGTATTCCACTTCCTCATTGGCGTCTTTGCTTACATGGGACGAGAG 41575
|| | |||| | || | |||||| | |||| || | ||||||||| || |||
Sbjct 5990 CCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAG 6049
Query 41576 TGGGAACTTAGCTATCGACTAGGGATGAGGCCCTGGATCTTTGTTGCGTACTCTGCTCCT 41635
||||||||||| | ||| || || ||| | | ||||| ||||||| || || ||||||
Sbjct 6050 TGGGAACTTAGTTTTCGTCTGGGTATGCGAACTTGGATGGTTGTTGCATATTCAGCTCCT 6109
Query 41636 GTCGCCGCTGCGACTGCTGTGTTCCTTGTTTATCCGTTTGGACAGGGCTCTTTTTCTGAT 41695
|| || ||||||| || ||| ||| | | || || |||| || || |||||||||
Sbjct 6110 GTTGCAGCTGCGAGTGTTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGAT 6169
Query 41696 GCTATGCCCTTGGGGATATCCGGCACCTTCAACTACATGCTGGTGTTCCAGGCTGAGCAC 41755
| |||||| | || || || || || ||||||| |||| | || |||||||||||||||
Sbjct 6170 GGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCAC 6229
Query 41756 AATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGCCGGCGTATTTGGTGGGAGTTTG 41815
|| ||||||||||| || ||||||||||| ||||| || || ||| | || || |
Sbjct 6230 AACATTCTTATGCACCCATTTCACATGCTAGGTGTAGCTGGTGTAATCGGCGGCTCCCTA 6289
Query 41816 TTCTCTGCTATGCACGGTAGCCTGGTCACGTCGTCACTCATTCGTGAGACGACTGAAGAG 41875
||| ||||||||| ||| | |||| || || | | || | || || || ||| |
Sbjct 6290 TTCAGTGCTATGCATGGTTCCTTGGTAACCTCTTGTTTGATCAGGGAAACCACAGAAAAT 6349
Query 41876 GTTTCACAGAACTATGGTTACAAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCT 41935
|| || | ||||||| ||||||| ||| || || ||||| ||||| || ||
Sbjct 6350 AAATCTGCTAATGAAGGTTACAGATTTGGTCTAGAAGATGAAACTTATAATATCGTAGCC 6409
Query 41936 GCTCACGGCTATTTTGGTCGGCTTATCTTCCAATATGCTAGCTTTAATAATTCCCGT 41992
| ||| || |||||||| || | ||||||||||||||||| || || || || |||
Sbjct 6410 GTTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGT 6466
>seq169634
Length=720
Score = 199 bits (220), Expect = 1e-46
Identities = 312/444 (70%), Gaps = 2/444 (0%)
Strand=Plus/Minus
Query 41261 AACCGTCTTTATGTAGGATGGTTCGGAGTCCTTATGATTCCGTGCCTCCTTG-CCGCTAC 41319
||||||||||| | |||||||| || || | ||||| || | ||| ||| |||| ||
Sbjct 450 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCC-TACCTTATTGACCGCAAC 392
Query 41320 AACTTGTTTTATTATCGCCTTTGTTGGCGCACCACCTGTTGACATCGATGGAATCCGAGA 41379
|| ||||||||||| || ||| || || || || || || ||||| || || ||
Sbjct 391 TTCTGTATTTATTATCGCTTTCATTGCTGCTCCTCCAGTGGATATTGATGGTATTCGTGA 332
Query 41380 ACCCGTCGCTGGCTCCCTGTTGTATGGTAACAACATCATATCAGGAGCCGTCGTTCCGAG 41439
||| || ||| || || ||||| ||||| || || ||||| | | | |||| |
Sbjct 331 ACCTGTTTATGGATCTCTAAGTTATGGAAACAATATTATTTCAGGTGTCATTATTCCTAC 272
Query 41440 CAGTAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTGCTACACTTGATGAATG 41499
| || || || | || || |||||||| |||||||| || | ||||||||||
Sbjct 271 TTCTGCAGCTATAGGTTTGCATTTTTACCCAATATGGGAAGCAGCATCCGTTGATGAATG 212
Query 41500 GCTGTACAACGGCGGTCCATTCCAACTCACCGTATTCCACTTCCTCATTGGCGTCTTTGC 41559
| | ||||| || ||||| | |||| | || | |||||| | |||| || |
Sbjct 211 GTTATACAATGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTG 152
Query 41560 TTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGGATGAGGCCCTGGATCTTTGT 41619
||||||||| || |||||||||||||| | || || || ||| | || ||||| ||||
Sbjct 151 TTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGACCTTGGATTGTTGT 92
Query 41620 TGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTTATCCGTTTGGACA 41679
||| || || ||| |||| || ||||| |||||||| ||| | | || || |||| ||
Sbjct 91 TGCATATTCAGCTTCTGTTGCAGCTGCAACTGCTGTTTTCTTGATCTACCCAATTGGTCA 32
Query 41680 GGGCTCTTTTTCTGATGCTATGCC 41703
|| |||||||||| ||||||
Sbjct 31 AGGAAGCTTTTCTGATGGTATGCC 8
>seq250312
Length=8481
Score = 152 bits (168), Expect = 1e-32
Identities = 313/467 (67%), Gaps = 9/467 (2%)
Strand=Plus/Plus
Query 41745 AGGCTGAGCACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGCCGGCGTATTTG 41804
||| ||||||||| ||||||| ||| | ||||||||||| || || || || ||| |||
Sbjct 1569 AGGTTGAGCACAACATTCTTAGGCACTCATTTCACATGCTAGGCGTAGCTGGTGTAATTG 1628
Query 41805 GTGGGAGTTTGTTCTCTGCTATGCACGGTAGCCTGGTCACGTCGTCACTCATTCGTGAGA 41864
| | | ||| |||||||| ||| | |||| || | | || | || |
Sbjct 1629 GCAGCTCCCTATTCAGTGCTATGCGTGGTTCCTTGGTAACCCCTAGTTTGATCAGGGAAA 1688
Query 41865 CGACTGAAGAGGTTTCACAGAACTATGGTTACAAGTTTGGTCAAGAGGAAGAGACTTACA 41924
| || | | | | | || | ||||| | || |||||||| | ||| | ||| |
Sbjct 1689 CCACAAAGAATGAATAAGCTAATGAAGGTTATATATTCGGTCAAGAAGGAGAAAATTAGA 1748
Query 41925 ATATTGTTGCTGCTCACGGCTATTTTGGTCGGCTTATCTTCCAATATGCTAGCTTTAATA 41984
||||||| || ||||| || ||||||||||| | ||||||| | ||||||| || || |
Sbjct 1749 ATATTGTAGCCGCTCATGGTTATTTTGGTCGATTGATCTTCCGACATGCTAGTTTCAACA 1808
Query 41985 ATTCCCGTAGTCTTCATTTCTTTCTTGCTGCCTGGCCTGTTGTAGGTATTTGGTTTGCTG 42044
| || ||| | | |||||||| || ||| | ||||| ||| |||||| ||
Sbjct 1809 ACTCACGTTTTTTACATTTCTTCCTAGCTACTTGGCC---------TATCTGGTTTATTG 1859
Query 42045 CGCTTGGCGTGTCTACCATGGCTTTCAACTTGAATGGTTTCAACTTTAACCAATCTCTGC 42104
| | || | || ||||||| |||| | |||||||| | || | |||||| |
Sbjct 1860 TGTTAGGTATCAGCACTATGGCTTACAACCTAAATGGTTTTAGTTTCCATCAATCTGTAG 1919
Query 42105 TAGCTGCTGATGGACAGGTGATCAACACCTGGGCTGACATTCTTAACCGTGCCAACCTTG 42164
| | | | | || || || || || |||||||| || ||||| |||| |||||||
Sbjct 1920 TCGACAGTCAATGTCATGTAATTAATACTTGGGCTGATATCATTAACTGTGCTAACCTTG 1979
Query 42165 GCTTTGAGGTGATGCATGAGCGGAACGCACACAACTTCCCGCTTGAC 42211
| | || || ||| |||| | || || || || ||||| || |||
Sbjct 1980 GTATGGAAGTTATGTATGAATGTAATGCTCATAATTTCCCTCTAGAC 2026
>seq300680
Length=3790
Score = 149 bits (164), Expect = 2e-31
Identities = 226/319 (71%), Gaps = 2/319 (1%)
Strand=Plus/Minus
Query 41687 TTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTACATGCTGGTGTTCCAG 41746
|||||||||| |||||| | || || || || || ||||||| |||| | || ||||||
Sbjct 670 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 611
Query 41747 GCTGAGCACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGCCGGCGTATTTGGT 41806
| ||||||||| ||||||||||| || ||||||||||| | || || || ||| | |
Sbjct 610 GTTGAGCACAACATTCTTATGCACCCATTTCACATGCTAAGCGTAGCTGGTGTACTCGTC 551
Query 41807 GGGAGTTTGTTCTCTGCTATGCACGGTAGCCTGGTCACGTCGTCACTCATTCGTGAGACG 41866
| | || ||||||||| ||| | |||| || || | | | || || ||
Sbjct 550 AGCTCCCTATTTAATGCTATGCATGGTTCCTTGGTAACCTC-TAGTTTAATCAGGAAACC 492
Query 41867 ACTGAAGAGGTTTCACAGAACTATGGTTACAAGTTTGGTCAAGAGGAAG-AGACTTACAA 41925
| ||| | | | || | |||||||| || |||||||| |||| | ||||| ||
Sbjct 491 AGAGAAAATGAATTTGCTAATGAAGGTTACAAATTCGGTCAAGAAGAAGAAAACTTATAA 432
Query 41926 TATTGTTGCTGCTCACGGCTATTTTGGTCGGCTTATCTTCCAATATGCTAGCTTTAATAA 41985
||| || || ||||| || |||||||| || | ||||||| |||||||| || || ||
Sbjct 431 TATCGTAGCCGCTCATGGTTATTTTGGCCGATTGGTCTTCCAGTATGCTAGTTTCAACAA 372
Query 41986 TTCCCGTAGTCTTCATTTC 42004
|| ||| | | ||||||
Sbjct 371 CTCTCGTTCTTTACATTTC 353
>seq10884
Length=5042
Score = 116 bits (128), Expect = 1e-21
Identities = 99/122 (81%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 41687 TTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTACATGCTGGTGTTCCAG 41746
|||||||||| |||||| | || || || || || ||||||| |||| | || ||||||
Sbjct 3789 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 3848
Query 41747 GCTGAGCACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGCCGGCGTATTTGGT 41806
||||||||||| ||||||||||| || ||||||||||| || || || || ||||| ||
Sbjct 3849 GCTGAGCACAACATTCTTATGCACCCATTTCACATGCTAGGCGTAGCTGGTGTATTCGGC 3908
Query 41807 GG 41808
||
Sbjct 3909 GG 3910
>seq36621
Length=13842
Score = 114 bits (126), Expect = 4e-21
Identities = 215/308 (70%), Gaps = 15/308 (5%)
Strand=Plus/Minus
Query 41911 GGAAGAGACTTACAATATTGTTGCTGCTCACGGCTATTTTGGTCGGCTTATCTTCCAATA 41970
|||||| ||||| ||||| || |||||| || ||||| | | | | |||||| ||||
Sbjct 7969 GGAAGAAACTTATAATATCGTATATGCTCATGGTTATTTGGCT-GATTGATCTTCTAATA 7911
Query 41971 TGCTAGCTTTAATAATTCCCGTAGTCTTCATTTCTTTCTTGCTGCCTGGCCTGTTGTAGG 42030
|||||| || || | || | | | | |||| ||||| ||||| ||||||||| | ||
Sbjct 7910 TGCTAGTTTCAACGACTCTCATTTTATATATTTTTTTCTAGCTGCTTGGCCTGTTTTTGG 7851
Query 42031 TATTTGGTTTGCTGCGCTTGGCGTGTCTACCAT---GGCTTTCAACTTGAATGGTTTCAA 42087
||| ||||| ||||| |||| || ||| ||| |||||||||| | ||||||| ||
Sbjct 7850 TATATGGTTCACTGCG-TTGG-GTA-CTAGCATTATGGCTTTCAACCTAAATGGTTGAAA 7794
Query 42088 CTTTAACCAATCTCTGCTAGCTGCTGATGGACAG----GTGATCAACACCTGGGCTGACA 42143
||||||| || ||| || | | |||| || || || || || | ||| |
Sbjct 7793 TCGAAACCAAT---TGGTAGTTGAT-AGTCACAGCCGTGTAATGAATACTTGAGGTGATA 7738
Query 42144 TTCTTAACCGTGCCAACCTTGGCTTTGAGGTGATGCATGAGCGGAACGCACACAACTTCC 42203
| ||||| ||| ||||||| | | || |||||||| || || || || || | ||
Sbjct 7737 TCAGTAACCATGCTAACCTTGTTATGAATGTTATGCATGAACGTAATGCTCATAATTCCC 7678
Query 42204 CGCTTGAC 42211
| || |||
Sbjct 7677 CTCTAGAC 7670
>seq8631
Length=609
Score = 104 bits (114), Expect = 7e-18
Identities = 121/162 (75%), Gaps = 1/162 (1%)
Strand=Plus/Minus
Query 41687 TTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTACATGCTGGTGTTCCAG 41746
|||| ||||| |||||| | || || || || || ||||||| |||| | || ||||||
Sbjct 335 TTTTTTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 276
Query 41747 GCTGAGCACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGCCGGCGTATTTGGT 41806
|| |||||||| ||||||||||| || ||||||||||| | || || || ||||| ||
Sbjct 275 GCCGAGCACAACATTCTTATGCACCCATTTCACATGCTAGACGTAGCTGGTGTATTCGGC 216
Query 41807 GG-GAGTTTGTTCTCTGCTATGCACGGTAGCCTGGTCACGTC 41847
|| | ||| ||||||||| ||| | |||| || ||
Sbjct 215 GGCTCCCTAATTCAGTGCTATGCATGGTTCCTTGGTAACCTC 174
Score = 86.0 bits (94), Expect = 2e-12
Identities = 112/155 (72%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 41459 CACTTCTACCCAATTTGGGAAGCTGCTACACTTGATGAATGGCTGTACAACGGCGGTCCA 41518
|| || |||||||| |||||||| || | ||||||||||| | ||||| || |||||
Sbjct 497 CATTTTTACCCAATATGGGAAGCAGCATCCATTGATGAATGGTTATACAATGGTGGTCCT 438
Query 41519 TTCCAACTCACCGTATTCCACTTCCTCATTGGCGTCTTTGCTTACATGGGACGAGAGTGG 41578
| |||| | || | |||||| | |||| || | ||||||||| || ||||||
Sbjct 437 TATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGG 378
Query 41579 GAACTTAGCTATCGACTAGGGATGAGGCCCTGGAT 41613
|||||||| | || || | ||| | || |||||
Sbjct 377 GAACTTAGTTTCCGTCTGGATATGCGCCCTTGGAT 343
>seq231965
Length=7494
Score = 100 bits (110), Expect = 8e-17
Identities = 139/195 (71%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 41606 CCCTGGATCTTTGTTGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTT 41665
|| ||||| ||||||| || | |||| ||| || ||||||||| ||| ||| | |
Sbjct 6582 CCTTGGATTATTGTTGCATATCCAGCTCTTGTTGCAACTGCGACTGATGTTTTCTTGATC 6641
Query 41666 TATCCGTTTGGACAGGGCTCTTTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTC 41725
|| || || | || | |||||| ||| ||| || | || || | || || |||
Sbjct 6642 TACCCAATTTGTCAATGAAGCTTTTCTCATGGTATTCCTCTAGGAATTTATGGTACTTTC 6701
Query 41726 AACTACATGCTGGTGTTCCAGGCTGAGCACAATATTCTTATGCATCCTTTTCACATGCTG 41785
|||| |||| | || || ||| ||||||||| ||||||||||| || ||| |||||||
Sbjct 6702 AACTTCATGATTGTATTTAAGGTTGAGCACAACATTCTTATGCACCCATTTTACATGCTA 6761
Query 41786 GGTGTGGCCGGCGTA 41800
|| || | ||| |||
Sbjct 6762 GGCGTAGACGGTGTA 6776
>seq254652
Length=6058
Score = 87.8 bits (96), Expect = 5e-13
Identities = 170/250 (68%), Gaps = 1/250 (0%)
Strand=Plus/Plus
Query 41402 TATGGTAACAACATCATATCAGGAGCCGTCGTTCCGAGCAGTAATGCCATCGGACTACAC 41461
||||| ||||| || || ||||| | || |||| | || || | || | ||
Sbjct 711 TATGGAAACAATATTATTTCAGGTGTTGTTATTCCTACTTCTACAGCTACAGGTTTGCAT 770
Query 41462 TTCTACCCAATTTGGGAAGCTGCTACACTTGATGAATGGCTG-TACAACGGCGGTCCATT 41520
|| |||| ||| | |||||| | ||||||||||| | ||||| || ||||| |
Sbjct 771 TTTTACCTAATATAGGAAGCAACATTTGTTGATGAATGGTTTATACAATGGTGGTCCTTA 830
Query 41521 CCAACTCACCGTATTCCACTTCCTCATTGGCGTCTTTGCTTACATGGGACGAGAGTGGGA 41580
|||| | ||| | |||||| | |||| || ||||||||| || ||||||||
Sbjct 831 TGAACTAATTGTACTACACTTCTTACTTGGTGTAGCGTGTTACATGGGTCGCGAGTGGGA 890
Query 41581 ACTTAGCTATCGACTAGGGATGAGGCCCTGGATCTTTGTTGCGTACTCTGCTCCTGTCGC 41640
|||||| | || || || || | || | ||| ||||||| || || |||||| | |
Sbjct 891 ACTTAGTTTCCGTCTGGGTGTGCGACCTTTGATTGTTGTTGCATATTCAGCTCCTATTAC 950
Query 41641 CGCTGCGACT 41650
|||||||||
Sbjct 951 AGCTGCGACT 960
>seq264332
Length=996
Score = 82.4 bits (90), Expect = 2e-11
Identities = 77/98 (79%), Gaps = 0/98 (0%)
Strand=Plus/Minus
Query 41949 TTGGTCGGCTTATCTTCCAATATGCTAGCTTTAATAATTCCCGTAGTCTTCATTTCTTTC 42008
|||| || | ||||||||||||||||| || || || || ||| | | |||||||| |
Sbjct 274 TTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCC 215
Query 42009 TTGCTGCCTGGCCTGTTGTAGGTATTTGGTTTGCTGCG 42046
| ||||| |||||||| ||||| || ||||| |||||
Sbjct 214 TAGCTGCTTGGCCTGTAGTAGGCATCTGGTTCACTGCG 177
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 145408921867824
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