Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27]
463,906 sequences; 661,937,708 total letters
Query= NC_020867.1
Length=44892
Score E
Sequences producing significant alignments: (Bits) Value
seq107965 275 2e-69
seq169634 226 8e-55
seq300680 161 3e-35
seq250312 150 5e-32
seq10884 131 5e-26
seq8631 114 4e-21
seq231965 104 7e-18
seq92275 104 7e-18
>seq107965
Length=6474
Score = 275 bits (304), Expect = 2e-69
Identities = 426/606 (70%), Gaps = 2/606 (0%)
Strand=Plus/Plus
Query 42451 CTTCTGTATGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGA 42510
|| || ||||| ||||| || || | ||| || | | |||| | || || ||
Sbjct 5870 CTGCTTTATGGAAACAATATTATTTTAGGTACCATTATTCCTATTTCTGCAGCTATAGGT 5929
Query 42511 CTACATTTGTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGA 42570
| ||||| || | || |||||||| | | |||| |||||| | |||||||| ||
Sbjct 5930 TTGCATTTTTACCCAATATGGGAAGCAACATCTGTTGATGAATGGTTATACAATGGTGGT 5989
Query 42571 CCTTATCAGCTCGTCGTGTTCCACTTCCTTATCGGTATCTTCTCTTACTTGGGACGCGAA 42630
|||||| | || | || | |||||| | | ||| | | |||| |||| || ||
Sbjct 5990 CCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAG 6049
Query 42631 TGGGAACTTTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTTACTCTGCCCCT 42690
||||||||| | || || || ||| | | ||||| ||||||| || || || |||
Sbjct 6050 TGGGAACTTAGTTTTCGTCTGGGTATGCGAACTTGGATGGTTGTTGCATATTCAGCTCCT 6109
Query 42691 GTGGCTGCAGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTTCTTTTTCAGAT 42750
|| || || |||| || || ||| | |||| ||| |||| ||||| ||||| |||
Sbjct 6110 GTTGCAGCTGCGAGTGTTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGAT 6169
Query 42751 GGAATGCCTCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACAT 42810
|| |||||||| || ||||| ||||| |||||||||||| | || ||||||||||| ||
Sbjct 6170 GGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCAC 6229
Query 42811 AACATTCTTATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTG 42870
|||||||||||||| || || || ||||| ||||| || || ||| | || || || |
Sbjct 6230 AACATTCTTATGCACCCATTTCACATGCTAGGTGTAGCTGGTGTAATCGGCGGCTCCCTA 6289
Query 42871 TTCTCAGCTATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCGTGAAACGACTGAAAAC 42930
||| |||||||||||| | || ||||||| | | | | ||||| || |||||
Sbjct 6290 TTCAGTGCTATGCATGGTTCCTTGGTAACCTCTTGTTTGATCAGGGAAACCACAGAAAAT 6349
Query 42931 GAAAGCCAAAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCA 42990
|| ||| | || |||| || |||| ||| || || |||||||| || || ||
Sbjct 6350 AAATCTGCTAATGAAGGTTACAGATTTGGTCTAGAAGATGAAACTTATAATATCGTAGCC 6409
Query 42991 GCGCATGGTTACTTTGGACGGCTTATCTTCCAATATGCGTCGTTT-AATAATAGTCGCTC 43049
| |||||||| ||||| || | |||||||||||||| | |||| || || ||| ||
Sbjct 6410 GTTCATGGTTATTTTGGCCGATTGATCTTCCAATATGC-TAGTTTCAACAACTCTCGTTC 6468
Query 43050 TTTGCA 43055
||| ||
Sbjct 6469 TTTACA 6474
>seq169634
Length=720
Score = 226 bits (250), Expect = 8e-55
Identities = 324/451 (72%), Gaps = 4/451 (1%)
Strand=Plus/Minus
Query 42316 AACCGTCTTTATGTTGGGTGGTTTGGTGTGCTGATGATTCCCTGTCTGCTCG-CTGCTAC 42374
||||||||||| |||| ||||||||||| ||||||| |||| || | | | || ||
Sbjct 450 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGAT-CCCTACCTTATTGACCGCAAC 392
Query 42375 CACCTGT-TTTATTGTCGCTTTCATTGCTGCCCCTCCGGTAGACATTGATGGCATTCGTG 42433
| ||| |||||| |||||||||||||||| ||||| || || |||||||| |||||||
Sbjct 391 TTC-TGTATTTATTATCGCTTTCATTGCTGCTCCTCCAGTGGATATTGATGGTATTCGTG 333
Query 42434 AACCTGTCTCTGGCTCTCTTCTGTATGGCAACAACATCATCTCTGGTGCCGTCGTGCCTA 42493
||||||| | ||| ||||| ||||| ||||| || || || |||| | | | ||||
Sbjct 332 AACCTGTTTATGGATCTCTAAGTTATGGAAACAATATTATTTCAGGTGTCATTATTCCTA 273
Query 42494 GCAGTAACGCAATTGGACTACATTTGTATTCGATCTGGGAAGCCAATACCCTTGACGAAT 42553
| || || || | ||||| || | || |||||||| || |||| ||||
Sbjct 272 CTTCTGCAGCTATAGGTTTGCATTTTTACCCAATATGGGAAGCAGCATCCGTTGATGAAT 213
Query 42554 GGCTCTACAATGGCGGACCTTATCAGCTCGTCGTGTTCCACTTCCTTATCGGTATCTTCT 42613
|| | |||||||| || |||||| | || | || | |||||| | | ||| | |
Sbjct 212 GGTTATACAATGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTT 153
Query 42614 CTTACTTGGGACGCGAATGGGAACTTTCGTACCGACTTGGGATGAGGCCCTGGATCTTTG 42673
|||| |||| || || ||||||||| | ||| || || ||| | || ||||| |||
Sbjct 152 GTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGACCTTGGATTGTTG 93
Query 42674 TTGCTTACTCTGCCCCTGTGGCTGCAGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGC 42733
|||| || || || |||| || || || ||||| || ||| | |||| ||| |||| |
Sbjct 92 TTGCATATTCAGCTTCTGTTGCAGCTGCAACTGCTGTTTTCTTGATCTACCCAATTGGTC 33
Query 42734 AAGGTTCTTTTTCAGATGGAATGCCTCTTGG 42764
|||| ||||| ||||| |||||||| ||
Sbjct 32 AAGGAAGCTTTTCTGATGGTATGCCTCTAGG 2
>seq300680
Length=3790
Score = 161 bits (178), Expect = 3e-35
Identities = 231/320 (72%), Gaps = 4/320 (1%)
Strand=Plus/Minus
Query 42742 TTTTCAGATGGAATGCCTCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAG 42801
||||| ||||| |||||||| || ||||| ||||| |||||||||||| | || ||||||
Sbjct 670 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 611
Query 42802 GCTGAACATAACATTCTTATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGGT 42861
| ||| || |||||||||||||| || || || ||||| | || || || ||| | |
Sbjct 610 GTTGAGCACAACATTCTTATGCACCCATTTCACATGCTAAGCGTAGCTGGTGTACTCGTC 551
Query 42862 GGGTCGTTGTTCTCAGCTATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCGTGAAACG 42921
| || | || |||||||||||| | || |||||| | || | |||||
Sbjct 550 AGCTCCCTATTTAATGCTATGCATGGTTCCTTGGTAACCTCTAGT-TTAATCAGGAAACC 492
Query 42922 ACTGAAAACGAAAGCCAAAATTATGGCTACAAGTTCGGTCAAG-AGGAGGAGACTTATAA 42980
| ||||| ||| ||| | || ||||| |||||||||| || || | ||||||||
Sbjct 491 AGAGAAAATGAATTTGCTAATGAAGGTTACAAATTCGGTCAAGAAGAAGAAAACTTATAA 432
Query 42981 CATTGTTGCAGCGCATGGTTACTTTGGACGGCTTATCTTCCAATATGCGTCGTTT-AATA 43039
|| || || || |||||||| ||||| || | ||||||| ||||| | |||| || |
Sbjct 431 TATCGTAGCCGCTCATGGTTATTTTGGCCGATTGGTCTTCCAGTATGC-TAGTTTCAACA 373
Query 43040 ATAGTCGCTCTTTGCACTTC 43059
| ||| ||||| || |||
Sbjct 372 ACTCTCGTTCTTTACATTTC 353
>seq250312
Length=8481
Score = 150 bits (166), Expect = 5e-32
Identities = 319/470 (68%), Gaps = 17/470 (4%)
Strand=Plus/Plus
Query 42800 AGGCTGAACATAACATTCTTATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTG 42859
||| ||| || |||||||||| ||| | || || ||||| || || || || ||| |||
Sbjct 1569 AGGTTGAGCACAACATTCTTAGGCACTCATTTCACATGCTAGGCGTAGCTGGTGTAATTG 1628
Query 42860 GTGGGTCGTTGTTCTCAGCTATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCGTGAAA 42919
| | || | ||| ||||||| |||| | || ||| || | | | | ||||
Sbjct 1629 GCAGCTCCCTATTCAGTGCTATGCGTGGTTCCTTGGTAACCCCTAGTTTGATCAGGGAAA 1688
Query 42920 CGACTGAAAACGAA--AGCCAAAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTA 42977
| || | || ||| ||| || | | || || | ||||||||||| | || | |||
Sbjct 1689 CCACAAAGAATGAATAAGCTAA--TGAAGGTTATATATTCGGTCAAGAAGGAGAAAATTA 1746
Query 42978 TAACATTGTTGCAGCGCATGGTTACTTTGGACGGCTTATCTTCCAATATGCGTCGTTT-A 43036
|| ||||| || || |||||||| ||||| || | ||||||| | |||| | |||| |
Sbjct 1747 GAATATTGTAGCCGCTCATGGTTATTTTGGTCGATTGATCTTCCGACATGC-TAGTTTCA 1805
Query 43037 ATAATAGTCGCTCTTTGCACTTCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCA 43096
| || || | ||| || ||||| || || ||||||| || ||||| |
Sbjct 1806 ACAACTCACGTTTTTTACATTTCTTCCTAGCTACTTGGCCT---------ATCTGGTTTA 1856
Query 43097 CTTCTCTT-GGCGTCAGTACTATGGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCA 43155
|| | || || |||| |||||||| | ||| | |||||||||| || | |||||
Sbjct 1857 -TTGTGTTAGGTATCAGCACTATGGCTTACAACCTAAATGGTTTTAGTTTCCATCAATCT 1915
Query 43156 CTTGTTGATAATCAGAATCATGTCATCCCTACTTGGGCTGATATTTTGAATCGTGCCAAC 43215
| || || | ||| |||||| || ||||||||||||||| | || |||| |||
Sbjct 1916 GTAGTCGACAGTCAATGTCATGTAATTAATACTTGGGCTGATATCATTAACTGTGCTAAC 1975
Query 43216 CTTGGCTTTGAGGTGATGCACGAGCGGAATGCACATAACTTCCCGCTTGA 43265
||||| | || || ||| | || | ||||| ||||| ||||| || ||
Sbjct 1976 CTTGGTATGGAAGTTATGTATGAATGTAATGCTCATAATTTCCCTCTAGA 2025
>seq10884
Length=5042
Score = 131 bits (144), Expect = 5e-26
Identities = 117/147 (80%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 42742 TTTTCAGATGGAATGCCTCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAG 42801
||||| ||||| |||||||| || ||||| ||||| |||||||||||| | || ||||||
Sbjct 3789 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 3848
Query 42802 GCTGAACATAACATTCTTATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGGT 42861
||||| || |||||||||||||| || || || ||||| || || || || ||||| ||
Sbjct 3849 GCTGAGCACAACATTCTTATGCACCCATTTCACATGCTAGGCGTAGCTGGTGTATTCGGC 3908
Query 42862 GGGTCGTTGTTCTCAGCTATGCATGGT 42888
|| || | ||| ||||| ||||||
Sbjct 3909 GGCTCCCTATTCATTGCTATACATGGT 3935
>seq8631
Length=609
Score = 114 bits (126), Expect = 4e-21
Identities = 115/148 (78%), Gaps = 1/148 (1%)
Strand=Plus/Minus
Query 42742 TTTTCAGATGGAATGCCTCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAG 42801
|||| ||||| |||||||| || ||||| ||||| |||||||||||| | || ||||||
Sbjct 335 TTTTTTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 276
Query 42802 GCTGAACATAACATTCTTATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGGT 42861
|| || || |||||||||||||| || || || ||||| | || || || ||||| ||
Sbjct 275 GCCGAGCACAACATTCTTATGCACCCATTTCACATGCTAGACGTAGCTGGTGTATTCGGC 216
Query 42862 GGGT-CGTTGTTCTCAGCTATGCATGGT 42888
|| | | | ||| ||||||||||||
Sbjct 215 GGCTCCCTAATTCAGTGCTATGCATGGT 188
>seq231965
Length=7494
Score = 104 bits (114), Expect = 7e-18
Identities = 140/195 (72%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 42661 CCCTGGATCTTTGTTGCTTACTCTGCCCCTGTGGCTGCAGCGACTGCAGTCTTCCTTGTC 42720
|| ||||| ||||||| || | || | ||| || | ||||||| || ||| | ||
Sbjct 6582 CCTTGGATTATTGTTGCATATCCAGCTCTTGTTGCAACTGCGACTGATGTTTTCTTGATC 6641
Query 42721 TATCCATTTGGGCAAGGTTCTTTTTCAGATGGAATGCCTCTTGGCATTTCCGGTACGTTC 42780
|| ||| || | ||| | ||||| |||| || ||||| || |||| ||||| |||
Sbjct 6642 TACCCAATTTGTCAATGAAGCTTTTCTCATGGTATTCCTCTAGGAATTTATGGTACTTTC 6701
Query 42781 AACTTCATGTTGGTCTTCCAGGCTGAACATAACATTCTTATGCATCCTTTCCATATGCTT 42840
||||||||| | || || ||| ||| || |||||||||||||| || || | |||||
Sbjct 6702 AACTTCATGATTGTATTTAAGGTTGAGCACAACATTCTTATGCACCCATTTTACATGCTA 6761
Query 42841 GGTGTTGCCGGCGTA 42855
|| || | ||| |||
Sbjct 6762 GGCGTAGACGGTGTA 6776
>seq92275
Length=5108
Score = 104 bits (114), Expect = 7e-18
Identities = 117/154 (76%), Gaps = 2/154 (1%)
Strand=Plus/Minus
Query 42331 GGGTGGTTTGGTGTGCTGATGATTCCCTGTCTGCTCGCTGCTACCACCTGT-TTTATTGT 42389
|| ||||||||||| ||||||| || || | | || || | ||| |||||| |
Sbjct 4788 GGATGGTTTGGTGTTTTGATGATCCCTACCCTATTGACCGCAACTTC-TGTATTTATTAT 4730
Query 42390 CGCTTTCATTGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTC 42449
|| ||||||| ||| ||||| ||||| |||||||| |||||||||||||| ||||| ||
Sbjct 4729 TGCCTTCATTGATGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATC 4670
Query 42450 TCTTCTGTATGGCAACAACATCATCTCTGGTGCC 42483
||| || || | || || || ||||| ||||||
Sbjct 4669 TCTACTTTACGAAAATAATATTATCTCGGGTGCC 4636
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 142742094490488
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