Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq107965 275 2e-69 seq169634 226 8e-55 seq300680 161 3e-35 seq250312 150 5e-32 seq10884 131 5e-26 seq8631 114 4e-21 seq231965 104 7e-18 seq92275 104 7e-18 >seq107965 Length=6474 Score = 275 bits (304), Expect = 2e-69 Identities = 426/606 (70%), Gaps = 2/606 (0%) Strand=Plus/Plus Query 42451 CTTCTGTATGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGA 42510 || || ||||| ||||| || || | ||| || | | |||| | || || || Sbjct 5870 CTGCTTTATGGAAACAATATTATTTTAGGTACCATTATTCCTATTTCTGCAGCTATAGGT 5929 Query 42511 CTACATTTGTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGA 42570 | ||||| || | || |||||||| | | |||| |||||| | |||||||| || Sbjct 5930 TTGCATTTTTACCCAATATGGGAAGCAACATCTGTTGATGAATGGTTATACAATGGTGGT 5989 Query 42571 CCTTATCAGCTCGTCGTGTTCCACTTCCTTATCGGTATCTTCTCTTACTTGGGACGCGAA 42630 |||||| | || | || | |||||| | | ||| | | |||| |||| || || Sbjct 5990 CCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAG 6049 Query 42631 TGGGAACTTTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTTACTCTGCCCCT 42690 ||||||||| | || || || ||| | | ||||| ||||||| || || || ||| Sbjct 6050 TGGGAACTTAGTTTTCGTCTGGGTATGCGAACTTGGATGGTTGTTGCATATTCAGCTCCT 6109 Query 42691 GTGGCTGCAGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTTCTTTTTCAGAT 42750 || || || |||| || || ||| | |||| ||| |||| ||||| ||||| ||| Sbjct 6110 GTTGCAGCTGCGAGTGTTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGAT 6169 Query 42751 GGAATGCCTCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACAT 42810 || |||||||| || ||||| ||||| |||||||||||| | || ||||||||||| || Sbjct 6170 GGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCAC 6229 Query 42811 AACATTCTTATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTG 42870 |||||||||||||| || || || ||||| ||||| || || ||| | || || || | Sbjct 6230 AACATTCTTATGCACCCATTTCACATGCTAGGTGTAGCTGGTGTAATCGGCGGCTCCCTA 6289 Query 42871 TTCTCAGCTATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCGTGAAACGACTGAAAAC 42930 ||| |||||||||||| | || ||||||| | | | | ||||| || ||||| Sbjct 6290 TTCAGTGCTATGCATGGTTCCTTGGTAACCTCTTGTTTGATCAGGGAAACCACAGAAAAT 6349 Query 42931 GAAAGCCAAAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCA 42990 || ||| | || |||| || |||| ||| || || |||||||| || || || Sbjct 6350 AAATCTGCTAATGAAGGTTACAGATTTGGTCTAGAAGATGAAACTTATAATATCGTAGCC 6409 Query 42991 GCGCATGGTTACTTTGGACGGCTTATCTTCCAATATGCGTCGTTT-AATAATAGTCGCTC 43049 | |||||||| ||||| || | |||||||||||||| | |||| || || ||| || Sbjct 6410 GTTCATGGTTATTTTGGCCGATTGATCTTCCAATATGC-TAGTTTCAACAACTCTCGTTC 6468 Query 43050 TTTGCA 43055 ||| || Sbjct 6469 TTTACA 6474 >seq169634 Length=720 Score = 226 bits (250), Expect = 8e-55 Identities = 324/451 (72%), Gaps = 4/451 (1%) Strand=Plus/Minus Query 42316 AACCGTCTTTATGTTGGGTGGTTTGGTGTGCTGATGATTCCCTGTCTGCTCG-CTGCTAC 42374 ||||||||||| |||| ||||||||||| ||||||| |||| || | | | || || Sbjct 450 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGAT-CCCTACCTTATTGACCGCAAC 392 Query 42375 CACCTGT-TTTATTGTCGCTTTCATTGCTGCCCCTCCGGTAGACATTGATGGCATTCGTG 42433 | ||| |||||| |||||||||||||||| ||||| || || |||||||| ||||||| Sbjct 391 TTC-TGTATTTATTATCGCTTTCATTGCTGCTCCTCCAGTGGATATTGATGGTATTCGTG 333 Query 42434 AACCTGTCTCTGGCTCTCTTCTGTATGGCAACAACATCATCTCTGGTGCCGTCGTGCCTA 42493 ||||||| | ||| ||||| ||||| ||||| || || || |||| | | | |||| Sbjct 332 AACCTGTTTATGGATCTCTAAGTTATGGAAACAATATTATTTCAGGTGTCATTATTCCTA 273 Query 42494 GCAGTAACGCAATTGGACTACATTTGTATTCGATCTGGGAAGCCAATACCCTTGACGAAT 42553 | || || || | ||||| || | || |||||||| || |||| |||| Sbjct 272 CTTCTGCAGCTATAGGTTTGCATTTTTACCCAATATGGGAAGCAGCATCCGTTGATGAAT 213 Query 42554 GGCTCTACAATGGCGGACCTTATCAGCTCGTCGTGTTCCACTTCCTTATCGGTATCTTCT 42613 || | |||||||| || |||||| | || | || | |||||| | | ||| | | Sbjct 212 GGTTATACAATGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTT 153 Query 42614 CTTACTTGGGACGCGAATGGGAACTTTCGTACCGACTTGGGATGAGGCCCTGGATCTTTG 42673 |||| |||| || || ||||||||| | ||| || || ||| | || ||||| ||| Sbjct 152 GTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGACCTTGGATTGTTG 93 Query 42674 TTGCTTACTCTGCCCCTGTGGCTGCAGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGC 42733 |||| || || || |||| || || || ||||| || ||| | |||| ||| |||| | Sbjct 92 TTGCATATTCAGCTTCTGTTGCAGCTGCAACTGCTGTTTTCTTGATCTACCCAATTGGTC 33 Query 42734 AAGGTTCTTTTTCAGATGGAATGCCTCTTGG 42764 |||| ||||| ||||| |||||||| || Sbjct 32 AAGGAAGCTTTTCTGATGGTATGCCTCTAGG 2 >seq300680 Length=3790 Score = 161 bits (178), Expect = 3e-35 Identities = 231/320 (72%), Gaps = 4/320 (1%) Strand=Plus/Minus Query 42742 TTTTCAGATGGAATGCCTCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAG 42801 ||||| ||||| |||||||| || ||||| ||||| |||||||||||| | || |||||| Sbjct 670 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 611 Query 42802 GCTGAACATAACATTCTTATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGGT 42861 | ||| || |||||||||||||| || || || ||||| | || || || ||| | | Sbjct 610 GTTGAGCACAACATTCTTATGCACCCATTTCACATGCTAAGCGTAGCTGGTGTACTCGTC 551 Query 42862 GGGTCGTTGTTCTCAGCTATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCGTGAAACG 42921 | || | || |||||||||||| | || |||||| | || | ||||| Sbjct 550 AGCTCCCTATTTAATGCTATGCATGGTTCCTTGGTAACCTCTAGT-TTAATCAGGAAACC 492 Query 42922 ACTGAAAACGAAAGCCAAAATTATGGCTACAAGTTCGGTCAAG-AGGAGGAGACTTATAA 42980 | ||||| ||| ||| | || ||||| |||||||||| || || | |||||||| Sbjct 491 AGAGAAAATGAATTTGCTAATGAAGGTTACAAATTCGGTCAAGAAGAAGAAAACTTATAA 432 Query 42981 CATTGTTGCAGCGCATGGTTACTTTGGACGGCTTATCTTCCAATATGCGTCGTTT-AATA 43039 || || || || |||||||| ||||| || | ||||||| ||||| | |||| || | Sbjct 431 TATCGTAGCCGCTCATGGTTATTTTGGCCGATTGGTCTTCCAGTATGC-TAGTTTCAACA 373 Query 43040 ATAGTCGCTCTTTGCACTTC 43059 | ||| ||||| || ||| Sbjct 372 ACTCTCGTTCTTTACATTTC 353 >seq250312 Length=8481 Score = 150 bits (166), Expect = 5e-32 Identities = 319/470 (68%), Gaps = 17/470 (4%) Strand=Plus/Plus Query 42800 AGGCTGAACATAACATTCTTATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTG 42859 ||| ||| || |||||||||| ||| | || || ||||| || || || || ||| ||| Sbjct 1569 AGGTTGAGCACAACATTCTTAGGCACTCATTTCACATGCTAGGCGTAGCTGGTGTAATTG 1628 Query 42860 GTGGGTCGTTGTTCTCAGCTATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCGTGAAA 42919 | | || | ||| ||||||| |||| | || ||| || | | | | |||| Sbjct 1629 GCAGCTCCCTATTCAGTGCTATGCGTGGTTCCTTGGTAACCCCTAGTTTGATCAGGGAAA 1688 Query 42920 CGACTGAAAACGAA--AGCCAAAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTA 42977 | || | || ||| ||| || | | || || | ||||||||||| | || | ||| Sbjct 1689 CCACAAAGAATGAATAAGCTAA--TGAAGGTTATATATTCGGTCAAGAAGGAGAAAATTA 1746 Query 42978 TAACATTGTTGCAGCGCATGGTTACTTTGGACGGCTTATCTTCCAATATGCGTCGTTT-A 43036 || ||||| || || |||||||| ||||| || | ||||||| | |||| | |||| | Sbjct 1747 GAATATTGTAGCCGCTCATGGTTATTTTGGTCGATTGATCTTCCGACATGC-TAGTTTCA 1805 Query 43037 ATAATAGTCGCTCTTTGCACTTCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCA 43096 | || || | ||| || ||||| || || ||||||| || ||||| | Sbjct 1806 ACAACTCACGTTTTTTACATTTCTTCCTAGCTACTTGGCCT---------ATCTGGTTTA 1856 Query 43097 CTTCTCTT-GGCGTCAGTACTATGGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCA 43155 || | || || |||| |||||||| | ||| | |||||||||| || | ||||| Sbjct 1857 -TTGTGTTAGGTATCAGCACTATGGCTTACAACCTAAATGGTTTTAGTTTCCATCAATCT 1915 Query 43156 CTTGTTGATAATCAGAATCATGTCATCCCTACTTGGGCTGATATTTTGAATCGTGCCAAC 43215 | || || | ||| |||||| || ||||||||||||||| | || |||| ||| Sbjct 1916 GTAGTCGACAGTCAATGTCATGTAATTAATACTTGGGCTGATATCATTAACTGTGCTAAC 1975 Query 43216 CTTGGCTTTGAGGTGATGCACGAGCGGAATGCACATAACTTCCCGCTTGA 43265 ||||| | || || ||| | || | ||||| ||||| ||||| || || Sbjct 1976 CTTGGTATGGAAGTTATGTATGAATGTAATGCTCATAATTTCCCTCTAGA 2025 >seq10884 Length=5042 Score = 131 bits (144), Expect = 5e-26 Identities = 117/147 (80%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 42742 TTTTCAGATGGAATGCCTCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAG 42801 ||||| ||||| |||||||| || ||||| ||||| |||||||||||| | || |||||| Sbjct 3789 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 3848 Query 42802 GCTGAACATAACATTCTTATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGGT 42861 ||||| || |||||||||||||| || || || ||||| || || || || ||||| || Sbjct 3849 GCTGAGCACAACATTCTTATGCACCCATTTCACATGCTAGGCGTAGCTGGTGTATTCGGC 3908 Query 42862 GGGTCGTTGTTCTCAGCTATGCATGGT 42888 || || | ||| ||||| |||||| Sbjct 3909 GGCTCCCTATTCATTGCTATACATGGT 3935 >seq8631 Length=609 Score = 114 bits (126), Expect = 4e-21 Identities = 115/148 (78%), Gaps = 1/148 (1%) Strand=Plus/Minus Query 42742 TTTTCAGATGGAATGCCTCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAG 42801 |||| ||||| |||||||| || ||||| ||||| |||||||||||| | || |||||| Sbjct 335 TTTTTTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 276 Query 42802 GCTGAACATAACATTCTTATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGGT 42861 || || || |||||||||||||| || || || ||||| | || || || ||||| || Sbjct 275 GCCGAGCACAACATTCTTATGCACCCATTTCACATGCTAGACGTAGCTGGTGTATTCGGC 216 Query 42862 GGGT-CGTTGTTCTCAGCTATGCATGGT 42888 || | | | ||| |||||||||||| Sbjct 215 GGCTCCCTAATTCAGTGCTATGCATGGT 188 >seq231965 Length=7494 Score = 104 bits (114), Expect = 7e-18 Identities = 140/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 42661 CCCTGGATCTTTGTTGCTTACTCTGCCCCTGTGGCTGCAGCGACTGCAGTCTTCCTTGTC 42720 || ||||| ||||||| || | || | ||| || | ||||||| || ||| | || Sbjct 6582 CCTTGGATTATTGTTGCATATCCAGCTCTTGTTGCAACTGCGACTGATGTTTTCTTGATC 6641 Query 42721 TATCCATTTGGGCAAGGTTCTTTTTCAGATGGAATGCCTCTTGGCATTTCCGGTACGTTC 42780 || ||| || | ||| | ||||| |||| || ||||| || |||| ||||| ||| Sbjct 6642 TACCCAATTTGTCAATGAAGCTTTTCTCATGGTATTCCTCTAGGAATTTATGGTACTTTC 6701 Query 42781 AACTTCATGTTGGTCTTCCAGGCTGAACATAACATTCTTATGCATCCTTTCCATATGCTT 42840 ||||||||| | || || ||| ||| || |||||||||||||| || || | ||||| Sbjct 6702 AACTTCATGATTGTATTTAAGGTTGAGCACAACATTCTTATGCACCCATTTTACATGCTA 6761 Query 42841 GGTGTTGCCGGCGTA 42855 || || | ||| ||| Sbjct 6762 GGCGTAGACGGTGTA 6776 >seq92275 Length=5108 Score = 104 bits (114), Expect = 7e-18 Identities = 117/154 (76%), Gaps = 2/154 (1%) Strand=Plus/Minus Query 42331 GGGTGGTTTGGTGTGCTGATGATTCCCTGTCTGCTCGCTGCTACCACCTGT-TTTATTGT 42389 || ||||||||||| ||||||| || || | | || || | ||| |||||| | Sbjct 4788 GGATGGTTTGGTGTTTTGATGATCCCTACCCTATTGACCGCAACTTC-TGTATTTATTAT 4730 Query 42390 CGCTTTCATTGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTC 42449 || ||||||| ||| ||||| ||||| |||||||| |||||||||||||| ||||| || Sbjct 4729 TGCCTTCATTGATGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATC 4670 Query 42450 TCTTCTGTATGGCAACAACATCATCTCTGGTGCC 42483 ||| || || | || || || ||||| |||||| Sbjct 4669 TCTACTTTACGAAAATAATATTATCTCGGGTGCC 4636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 142742094490488