Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq107965 215 2e-51 seq169634 176 1e-39 seq250312 141 3e-29 seq300680 127 6e-25 seq36621 118 3e-22 seq10884 107 6e-19 seq8631 100 8e-17 >seq107965 Length=6474 Score = 215 bits (238), Expect = 2e-51 Identities = 410/598 (69%), Gaps = 8/598 (1%) Strand=Plus/Minus Query 26098 AGAACGGCTGTTATTAAAACTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGC 26157 |||||| ||| || ||||| ||||| || || || |||| ||||| || || || | Sbjct 6469 AGAACGAGAGTTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAAC 6410 Query 26158 AGCGACAATATTATATGTCTCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGAC 26217 || || |||||||| || || || ||| | ||||| | || || | ||| || Sbjct 6409 GGCTACGATATTATAAGTTTCATCTTCTAGACCAAATCTGTAACCTTCATTAGCAGATTT 6350 Query 26218 TTCCTCTGTCGTTTCTGCAATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAA 26277 | ||||| ||||| || | | || || ||||| || ||||||||| ||| Sbjct 6349 ATTTTCTGTGGTTTCCCTGATCAAACAAGAGGTTACCAAGGAACCATGCATAGCACTGAA 6290 Query 26278 AAGAGCTCCACCGAAAACCCCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATT 26337 || | || |||| || ||||| ||||| ||| || ||||||||||| || || || Sbjct 6289 TAGGGAGCCGCCGATTACACCAGCTACACCTAGCATGTGAAATGGGTGCATAAGAATGTT 6230 Query 26338 ATGTTCTGCTTGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCC 26397 || || || |||||||| | ||| ||||| ||||||||||| || || |||||||| || Sbjct 6229 GTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACC 6170 Query 26398 ATCACTAAAACTCCCTTGTCCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAG 26457 |||| ||| || ||||| || | || || | ||||| || | || || | | Sbjct 6169 ATCAGAAAAGCTTCCTTGACCAATTGGGTAGATCAAGAAAACAACACTCGCAGCTGCAAC 6110 Query 26458 TGGTGCTGTATATGCAACAAATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCA 26517 || |||| ||||||||||| ||||| | || ||| || || | || |||||||| Sbjct 6109 AGGAGCTGAATATGCAACAACCATCCAAGTTCGCATACCCAGACGAAAACTAAGTTCCCA 6050 Query 26518 CTGTCTCCCTGCATATGCTGCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGG 26577 || | || || ||||| || | ||||||||| | | ||| |||| ||| || Sbjct 6049 CTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGG 5990 Query 26578 TCCGCCATTGTATAGCCACTCGTC--CAG-TGTGCCAGCTTCCCAGATCGGGTAAAAATG 26634 || |||||||||| ||| || || ||| ||| |||||||| || ||||||||||| Sbjct 5989 ACCACCATTGTATAACCATTCATCAACAGATGT---TGCTTCCCATATTGGGTAAAAATG 5933 Query 26635 TAGTCCGATTGCGTTAGAGGAGGGGACGACTGCT-CCTGATATTATATTGTTTCCGTA 26691 | || || || ||| | ||| | || | ||| | || ||||||||||| || Sbjct 5932 CAAACCTATAGCTGCAGA-AATAGGAATAATGGTACCTAAAATAATATTGTTTCCATA 5876 >seq169634 Length=720 Score = 176 bits (194), Expect = 1e-39 Identities = 316/459 (69%), Gaps = 2/459 (0%) Strand=Plus/Plus Query 26384 CCAAGAGGCATTCCATCACTAAAACTCCCTTGTCCGAAAGGATAAACTAAGAACACTGCG 26443 || |||||||| |||||| ||| || ||||| || | || || | ||||| || || Sbjct 2 CCTAGAGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCA 61 Query 26444 AGAGCTGCGGATAGTGGTGCTGTATATGCAACAAATATCCATGGTCTCATTCCTAGTCTG 26503 || || | | | |||| ||||||||||| ||||| |||| ||| || || | | Sbjct 62 GTTGCAGCTGCAACAGAAGCTGAATATGCAACAACAATCCAAGGTCGCATACCCAGACGG 121 Query 26504 TAAGATAGTTCCCACTGTCTCCCTGCATATGCTGCTACTCCTATTAAGAAGTGGAAGATA 26563 || |||||||||| | || || ||||| || | ||||||||| | | | Sbjct 122 AAACTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACA 181 Query 26564 ATGAGTTGATATGGTCCGCCATTGTATAGCCACTCGTCCAGTGTGCCAGCTTCCCAGATC 26623 || |||| ||| || || |||||||||| ||| || || | | | |||||||| || Sbjct 182 ATTAGTTCATAAGGACCACCATTGTATAACCATTCATCAACGGATGCTGCTTCCCATATT 241 Query 26624 GGGTAAAAATGTAGTCCGATTGCGTTAGAGGAGGGGACGACTGCTCCTGATATTATATTG 26683 ||||||||||| | || || || ||| | || | | | ||||| || |||||| Sbjct 242 GGGTAAAAATGCAAACCTATAGCTGCAGAAGTAGGAATAATGACACCTGAAATAATATTG 301 Query 26684 TTTCCGTACATTAACGAGCCGGAAACTGGCTCACGTATGCCATCTATATCTACAGGCGGT 26743 ||||| || ||| || || |||| || ||||| || ||||| ||||| || || || Sbjct 302 TTTCCATAACTTAGAGATCCATAAACAGGTTCACGAATACCATCAATATCCACTGGAGGA 361 Query 26744 GCTGCGATGAAGGCAAGTATAAA-ACATGTAGTGGCTGCGAGTAAGCAGGGTATCATAAG 26802 || || ||||| || | ||||| ||| | ||| || | | |||| || ||||| | Sbjct 362 GCAGCAATGAAAGCGATAATAAATACA-GAAGTTGCGGTCAATAAGGTAGGGATCATCAA 420 Query 26803 CACCCCGAACCATCCCACATAGAGACGGTTCTCAGTACT 26841 || || |||||||| | || |||||||| || ||||| Sbjct 421 AACACCAAACCATCCAATGTAAAGACGGTTTTCGGTACT 459 >seq250312 Length=8481 Score = 141 bits (156), Expect = 3e-29 Identities = 231/328 (70%), Gaps = 11/328 (3%) Strand=Plus/Minus Query 25882 GTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTAGCTCG 25941 ||| || || || ||||||||||||| || | ||||||||| | || |||||||| | Sbjct 2026 GTCTAGAGGGAAATTATGAGCATTACATTCATACATAACTTCCATACCAAGGTTAGCACA 1967 Query 25942 GTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAAC-ATCTACTACTGACTGGT 26000 ||| | | ||||||||| ||| |||| | | |||| || || ||||| || || | Sbjct 1966 GTTAATGATATCAGCCCAAGTATTAATTA-CATGACATTGACTGTCGACTACAGATTGAT 1908 Query 26001 TAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGCCATA 26060 || |||||||||||||||| | ||||| |||| |||||| | | | | ||| Sbjct 1907 GGAAACTAAAACCATTTAGGTTGTAAGCCATAGTGCTGATACCTA-ACA------CAATA 1855 Query 26061 TGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAAACTCG 26120 ||| | ||||||||||| || |||||||| | | |||| ||| || ||||| | Sbjct 1854 AACCA--GATAGGCCAAGTAGCTAGGAAGAAATGTAAAAAACGTGAGTTGTTGAAACTAG 1797 Query 26121 CATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGTCTCTT 26180 ||| | || || |||| ||||| || || || || || |||||||| || | ||| Sbjct 1796 CATGTCGGAAGATCAATCGACCAAAATAACCATGAGCGGCTACAATATTCTAATTTTCTC 1737 Query 26181 CATCTTGCCCAAACTTATAGCCATAATT 26208 | ||||| || || |||| || | ||| Sbjct 1736 CTTCTTGACCGAATATATAACCTTCATT 1709 >seq300680 Length=3790 Score = 127 bits (140), Expect = 6e-25 Identities = 223/322 (69%), Gaps = 2/322 (1%) Strand=Plus/Plus Query 26089 GAAATGAAGAGAACGGCTGTTATTAAAACTCGCATACTGAAAAATTAATCTCCCAAAGTA 26148 |||||| | |||||| ||| || ||||| |||||||| || | |||| ||||| || Sbjct 353 GAAATGTAAAGAACGAGAGTTGTTGAAACTAGCATACTGGAAGACCAATCGGCCAAAATA 412 Query 26149 CCCGTGTGCAGCGACAATATTATATGTCT-CTTCATCTTGCCCAAACTTATAGCCATAAT 26207 || || || || || |||||||| || | |||| ||||| || || || || || | || Sbjct 413 ACCATGAGCGGCTACGATATTATAAGTTTTCTTCTTCTTGACCGAATTTGTAACCTTCAT 472 Query 26208 TCTGTGAGACTTCCTCTGTCGTTTCTGCAATAAGTGAGGAAGTAACCAAACTTCCGTGCA 26267 | | | | ||| | ||||| | ||| || | || ||||| || |||| Sbjct 473 TAGCAAATTCATTTTCTCTGGTTTCCTGATTAAACTAG-AGGTTACCAAGGAACCATGCA 531 Query 26268 TAGCAGCGAAAAGAGCTCCACCGAAAACCCCAGCAACACCAGCCATATGGAATGGGTGCA 26327 ||||| || || | | ||| || ||||| || | ||| || |||||||||| Sbjct 532 TAGCATTAAATAGGGAGCTGACGAGTACACCAGCTACGCTTAGCATGTGAAATGGGTGCA 591 Query 26328 TGAGTATATTATGTTCTGCTTGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAA 26387 | || || || || || | |||||||| | ||| ||||| ||||||||||| || || | Sbjct 592 TAAGAATGTTGTGCTCAACCTGGAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTA 651 Query 26388 GAGGCATTCCATCACTAAAACT 26409 ||||||| |||||| ||| || Sbjct 652 GAGGCATACCATCAGAAAAGCT 673 >seq36621 Length=13842 Score = 118 bits (130), Expect = 3e-22 Identities = 212/306 (69%), Gaps = 3/306 (1%) Strand=Plus/Plus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAAC-TTCAAAGCCGAGGTT 25935 || ||||| || || | |||||||||||||| || |||||||| |||| | | ||||| Sbjct 7665 GCCAAGTCTAGAGGGGAATTATGAGCATTACGTTCATGCATAACATTCATAACA-AGGTT 7723 Query 25936 AGCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACTGA 25995 ||| |||| | |||| | || ||| |||| | | | ||| ||||| | Sbjct 7724 AGCATGGTTACTGATATCACCTCAAGTATTCATTACACGGCTGTGACTATCAACTACCAA 7783 Query 25996 CTGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAG 26055 ||||| || ||||||||||||| || ||||| ||| |||||| | || | Sbjct 7784 TTGGTTTCGATTTCAACCATTTAGGTTGAAAGCCATAATGCTAGTACCCAACGCAGTGAA 7843 Query 26056 CCATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAA 26115 |||||| |||| ||| ||||||| ||| ||||| |||| | | || | || || || Sbjct 7844 CCATATACCAAAAACAGGCCAAGCAGCTAGAAAAAAATATATAAAATGAGAGTCGTTGAA 7903 Query 26116 ACTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGT 26175 ||| ||||| | || || |||| ||||| || || || ||| || |||||||| || Sbjct 7904 ACTAGCATATTAGAAGATCAATCAGCCAAA-TAACCATGAGCATATACGATATTATAAGT 7962 Query 26176 CTCTTC 26181 ||||| Sbjct 7963 TTCTTC 7968 >seq10884 Length=5042 Score = 107 bits (118), Expect = 6e-19 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 26261 CCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAACCCCAGCAACACCAGCCATATGGAAT 26320 || || |||||| ||| || | || ||||| || ||||| || || ||| || ||| Sbjct 3934 CCATGTATAGCAATGAATAGGGAGCCGCCGAATACACCAGCTACGCCTAGCATGTGAAAT 3875 Query 26321 GGGTGCATGAGTATATTATGTTCTGCTTGGAATACGAACATAAAGTTAAAAGTACCAGAG 26380 |||||||| || || || || || || |||||||| | ||| ||||| ||||||||||| Sbjct 3874 GGGTGCATAAGAATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAA 3815 Query 26381 ATACCAAGAGGCATTCCATCACTAAAACT 26409 || || |||||||| |||||| ||| || Sbjct 3814 ATTCCTAGAGGCATACCATCAGAAAAGCT 3786 >seq8631 Length=609 Score = 100 bits (110), Expect = 8e-17 Identities = 113/150 (75%), Gaps = 1/150 (1%) Strand=Plus/Plus Query 26261 CCGTGCATAGCAGCGAAA-AGAGCTCCACCGAAAACCCCAGCAACACCAGCCATATGGAA 26319 || ||||||||| ||| || | || ||||| || ||||| || | ||| || || Sbjct 189 CCATGCATAGCACTGAATTAGGGAGCCGCCGAATACACCAGCTACGTCTAGCATGTGAAA 248 Query 26320 TGGGTGCATGAGTATATTATGTTCTGCTTGGAATACGAACATAAAGTTAAAAGTACCAGA 26379 ||||||||| || || || || || || |||||||| | ||| ||||| ||||||||||| Sbjct 249 TGGGTGCATAAGAATGTTGTGCTCGGCCTGGAATACAATCATGAAGTTGAAAGTACCAGA 308 Query 26380 GATACCAAGAGGCATTCCATCACTAAAACT 26409 || || |||||||| |||||| ||| || Sbjct 309 AATTCCTAGAGGCATACCATCAAAAAAGCT 338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146898271763520