Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27]
463,906 sequences; 661,937,708 total letters
Query= NC_020874.1
Length=46198
Score E
Sequences producing significant alignments: (Bits) Value
seq107965 215 2e-51
seq169634 176 1e-39
seq250312 141 3e-29
seq300680 127 6e-25
seq36621 118 3e-22
seq10884 107 6e-19
seq8631 100 8e-17
>seq107965
Length=6474
Score = 215 bits (238), Expect = 2e-51
Identities = 410/598 (69%), Gaps = 8/598 (1%)
Strand=Plus/Minus
Query 26098 AGAACGGCTGTTATTAAAACTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGC 26157
|||||| ||| || ||||| ||||| || || || |||| ||||| || || || |
Sbjct 6469 AGAACGAGAGTTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAAC 6410
Query 26158 AGCGACAATATTATATGTCTCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGAC 26217
|| || |||||||| || || || ||| | ||||| | || || | ||| ||
Sbjct 6409 GGCTACGATATTATAAGTTTCATCTTCTAGACCAAATCTGTAACCTTCATTAGCAGATTT 6350
Query 26218 TTCCTCTGTCGTTTCTGCAATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAA 26277
| ||||| ||||| || | | || || ||||| || ||||||||| |||
Sbjct 6349 ATTTTCTGTGGTTTCCCTGATCAAACAAGAGGTTACCAAGGAACCATGCATAGCACTGAA 6290
Query 26278 AAGAGCTCCACCGAAAACCCCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATT 26337
|| | || |||| || ||||| ||||| ||| || ||||||||||| || || ||
Sbjct 6289 TAGGGAGCCGCCGATTACACCAGCTACACCTAGCATGTGAAATGGGTGCATAAGAATGTT 6230
Query 26338 ATGTTCTGCTTGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCC 26397
|| || || |||||||| | ||| ||||| ||||||||||| || || |||||||| ||
Sbjct 6229 GTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACC 6170
Query 26398 ATCACTAAAACTCCCTTGTCCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAG 26457
|||| ||| || ||||| || | || || | ||||| || | || || | |
Sbjct 6169 ATCAGAAAAGCTTCCTTGACCAATTGGGTAGATCAAGAAAACAACACTCGCAGCTGCAAC 6110
Query 26458 TGGTGCTGTATATGCAACAAATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCA 26517
|| |||| ||||||||||| ||||| | || ||| || || | || ||||||||
Sbjct 6109 AGGAGCTGAATATGCAACAACCATCCAAGTTCGCATACCCAGACGAAAACTAAGTTCCCA 6050
Query 26518 CTGTCTCCCTGCATATGCTGCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGG 26577
|| | || || ||||| || | ||||||||| | | ||| |||| ||| ||
Sbjct 6049 CTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGG 5990
Query 26578 TCCGCCATTGTATAGCCACTCGTC--CAG-TGTGCCAGCTTCCCAGATCGGGTAAAAATG 26634
|| |||||||||| ||| || || ||| ||| |||||||| || |||||||||||
Sbjct 5989 ACCACCATTGTATAACCATTCATCAACAGATGT---TGCTTCCCATATTGGGTAAAAATG 5933
Query 26635 TAGTCCGATTGCGTTAGAGGAGGGGACGACTGCT-CCTGATATTATATTGTTTCCGTA 26691
| || || || ||| | ||| | || | ||| | || ||||||||||| ||
Sbjct 5932 CAAACCTATAGCTGCAGA-AATAGGAATAATGGTACCTAAAATAATATTGTTTCCATA 5876
>seq169634
Length=720
Score = 176 bits (194), Expect = 1e-39
Identities = 316/459 (69%), Gaps = 2/459 (0%)
Strand=Plus/Plus
Query 26384 CCAAGAGGCATTCCATCACTAAAACTCCCTTGTCCGAAAGGATAAACTAAGAACACTGCG 26443
|| |||||||| |||||| ||| || ||||| || | || || | ||||| || ||
Sbjct 2 CCTAGAGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCA 61
Query 26444 AGAGCTGCGGATAGTGGTGCTGTATATGCAACAAATATCCATGGTCTCATTCCTAGTCTG 26503
|| || | | | |||| ||||||||||| ||||| |||| ||| || || | |
Sbjct 62 GTTGCAGCTGCAACAGAAGCTGAATATGCAACAACAATCCAAGGTCGCATACCCAGACGG 121
Query 26504 TAAGATAGTTCCCACTGTCTCCCTGCATATGCTGCTACTCCTATTAAGAAGTGGAAGATA 26563
|| |||||||||| | || || ||||| || | ||||||||| | | |
Sbjct 122 AAACTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACA 181
Query 26564 ATGAGTTGATATGGTCCGCCATTGTATAGCCACTCGTCCAGTGTGCCAGCTTCCCAGATC 26623
|| |||| ||| || || |||||||||| ||| || || | | | |||||||| ||
Sbjct 182 ATTAGTTCATAAGGACCACCATTGTATAACCATTCATCAACGGATGCTGCTTCCCATATT 241
Query 26624 GGGTAAAAATGTAGTCCGATTGCGTTAGAGGAGGGGACGACTGCTCCTGATATTATATTG 26683
||||||||||| | || || || ||| | || | | | ||||| || ||||||
Sbjct 242 GGGTAAAAATGCAAACCTATAGCTGCAGAAGTAGGAATAATGACACCTGAAATAATATTG 301
Query 26684 TTTCCGTACATTAACGAGCCGGAAACTGGCTCACGTATGCCATCTATATCTACAGGCGGT 26743
||||| || ||| || || |||| || ||||| || ||||| ||||| || || ||
Sbjct 302 TTTCCATAACTTAGAGATCCATAAACAGGTTCACGAATACCATCAATATCCACTGGAGGA 361
Query 26744 GCTGCGATGAAGGCAAGTATAAA-ACATGTAGTGGCTGCGAGTAAGCAGGGTATCATAAG 26802
|| || ||||| || | ||||| ||| | ||| || | | |||| || ||||| |
Sbjct 362 GCAGCAATGAAAGCGATAATAAATACA-GAAGTTGCGGTCAATAAGGTAGGGATCATCAA 420
Query 26803 CACCCCGAACCATCCCACATAGAGACGGTTCTCAGTACT 26841
|| || |||||||| | || |||||||| || |||||
Sbjct 421 AACACCAAACCATCCAATGTAAAGACGGTTTTCGGTACT 459
>seq250312
Length=8481
Score = 141 bits (156), Expect = 3e-29
Identities = 231/328 (70%), Gaps = 11/328 (3%)
Strand=Plus/Minus
Query 25882 GTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTAGCTCG 25941
||| || || || ||||||||||||| || | ||||||||| | || |||||||| |
Sbjct 2026 GTCTAGAGGGAAATTATGAGCATTACATTCATACATAACTTCCATACCAAGGTTAGCACA 1967
Query 25942 GTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAAC-ATCTACTACTGACTGGT 26000
||| | | ||||||||| ||| |||| | | |||| || || ||||| || || |
Sbjct 1966 GTTAATGATATCAGCCCAAGTATTAATTA-CATGACATTGACTGTCGACTACAGATTGAT 1908
Query 26001 TAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGCCATA 26060
|| |||||||||||||||| | ||||| |||| |||||| | | | | |||
Sbjct 1907 GGAAACTAAAACCATTTAGGTTGTAAGCCATAGTGCTGATACCTA-ACA------CAATA 1855
Query 26061 TGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAAACTCG 26120
||| | ||||||||||| || |||||||| | | |||| ||| || ||||| |
Sbjct 1854 AACCA--GATAGGCCAAGTAGCTAGGAAGAAATGTAAAAAACGTGAGTTGTTGAAACTAG 1797
Query 26121 CATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGTCTCTT 26180
||| | || || |||| ||||| || || || || || |||||||| || | |||
Sbjct 1796 CATGTCGGAAGATCAATCGACCAAAATAACCATGAGCGGCTACAATATTCTAATTTTCTC 1737
Query 26181 CATCTTGCCCAAACTTATAGCCATAATT 26208
| ||||| || || |||| || | |||
Sbjct 1736 CTTCTTGACCGAATATATAACCTTCATT 1709
>seq300680
Length=3790
Score = 127 bits (140), Expect = 6e-25
Identities = 223/322 (69%), Gaps = 2/322 (1%)
Strand=Plus/Plus
Query 26089 GAAATGAAGAGAACGGCTGTTATTAAAACTCGCATACTGAAAAATTAATCTCCCAAAGTA 26148
|||||| | |||||| ||| || ||||| |||||||| || | |||| ||||| ||
Sbjct 353 GAAATGTAAAGAACGAGAGTTGTTGAAACTAGCATACTGGAAGACCAATCGGCCAAAATA 412
Query 26149 CCCGTGTGCAGCGACAATATTATATGTCT-CTTCATCTTGCCCAAACTTATAGCCATAAT 26207
|| || || || || |||||||| || | |||| ||||| || || || || || | ||
Sbjct 413 ACCATGAGCGGCTACGATATTATAAGTTTTCTTCTTCTTGACCGAATTTGTAACCTTCAT 472
Query 26208 TCTGTGAGACTTCCTCTGTCGTTTCTGCAATAAGTGAGGAAGTAACCAAACTTCCGTGCA 26267
| | | | ||| | ||||| | ||| || | || ||||| || ||||
Sbjct 473 TAGCAAATTCATTTTCTCTGGTTTCCTGATTAAACTAG-AGGTTACCAAGGAACCATGCA 531
Query 26268 TAGCAGCGAAAAGAGCTCCACCGAAAACCCCAGCAACACCAGCCATATGGAATGGGTGCA 26327
||||| || || | | ||| || ||||| || | ||| || ||||||||||
Sbjct 532 TAGCATTAAATAGGGAGCTGACGAGTACACCAGCTACGCTTAGCATGTGAAATGGGTGCA 591
Query 26328 TGAGTATATTATGTTCTGCTTGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAA 26387
| || || || || || | |||||||| | ||| ||||| ||||||||||| || || |
Sbjct 592 TAAGAATGTTGTGCTCAACCTGGAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTA 651
Query 26388 GAGGCATTCCATCACTAAAACT 26409
||||||| |||||| ||| ||
Sbjct 652 GAGGCATACCATCAGAAAAGCT 673
>seq36621
Length=13842
Score = 118 bits (130), Expect = 3e-22
Identities = 212/306 (69%), Gaps = 3/306 (1%)
Strand=Plus/Plus
Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAAC-TTCAAAGCCGAGGTT 25935
|| ||||| || || | |||||||||||||| || |||||||| |||| | | |||||
Sbjct 7665 GCCAAGTCTAGAGGGGAATTATGAGCATTACGTTCATGCATAACATTCATAACA-AGGTT 7723
Query 25936 AGCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACTGA 25995
||| |||| | |||| | || ||| |||| | | | ||| ||||| |
Sbjct 7724 AGCATGGTTACTGATATCACCTCAAGTATTCATTACACGGCTGTGACTATCAACTACCAA 7783
Query 25996 CTGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAG 26055
||||| || ||||||||||||| || ||||| ||| |||||| | || |
Sbjct 7784 TTGGTTTCGATTTCAACCATTTAGGTTGAAAGCCATAATGCTAGTACCCAACGCAGTGAA 7843
Query 26056 CCATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAA 26115
|||||| |||| ||| ||||||| ||| ||||| |||| | | || | || || ||
Sbjct 7844 CCATATACCAAAAACAGGCCAAGCAGCTAGAAAAAAATATATAAAATGAGAGTCGTTGAA 7903
Query 26116 ACTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGT 26175
||| ||||| | || || |||| ||||| || || || ||| || |||||||| ||
Sbjct 7904 ACTAGCATATTAGAAGATCAATCAGCCAAA-TAACCATGAGCATATACGATATTATAAGT 7962
Query 26176 CTCTTC 26181
|||||
Sbjct 7963 TTCTTC 7968
>seq10884
Length=5042
Score = 107 bits (118), Expect = 6e-19
Identities = 113/149 (76%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 26261 CCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAACCCCAGCAACACCAGCCATATGGAAT 26320
|| || |||||| ||| || | || ||||| || ||||| || || ||| || |||
Sbjct 3934 CCATGTATAGCAATGAATAGGGAGCCGCCGAATACACCAGCTACGCCTAGCATGTGAAAT 3875
Query 26321 GGGTGCATGAGTATATTATGTTCTGCTTGGAATACGAACATAAAGTTAAAAGTACCAGAG 26380
|||||||| || || || || || || |||||||| | ||| ||||| |||||||||||
Sbjct 3874 GGGTGCATAAGAATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAA 3815
Query 26381 ATACCAAGAGGCATTCCATCACTAAAACT 26409
|| || |||||||| |||||| ||| ||
Sbjct 3814 ATTCCTAGAGGCATACCATCAGAAAAGCT 3786
>seq8631
Length=609
Score = 100 bits (110), Expect = 8e-17
Identities = 113/150 (75%), Gaps = 1/150 (1%)
Strand=Plus/Plus
Query 26261 CCGTGCATAGCAGCGAAA-AGAGCTCCACCGAAAACCCCAGCAACACCAGCCATATGGAA 26319
|| ||||||||| ||| || | || ||||| || ||||| || | ||| || ||
Sbjct 189 CCATGCATAGCACTGAATTAGGGAGCCGCCGAATACACCAGCTACGTCTAGCATGTGAAA 248
Query 26320 TGGGTGCATGAGTATATTATGTTCTGCTTGGAATACGAACATAAAGTTAAAAGTACCAGA 26379
||||||||| || || || || || || |||||||| | ||| ||||| |||||||||||
Sbjct 249 TGGGTGCATAAGAATGTTGTGCTCGGCCTGGAATACAATCATGAAGTTGAAAGTACCAGA 308
Query 26380 GATACCAAGAGGCATTCCATCACTAAAACT 26409
|| || |||||||| |||||| ||| ||
Sbjct 309 AATTCCTAGAGGCATACCATCAAAAAAGCT 338
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 146898271763520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |