Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_020875.1 Length=182801 Score E Sequences producing significant alignments: (Bits) Value seq107965 311 1e-79 seq169634 215 6e-51 seq300680 188 8e-43 seq250312 183 4e-41 seq10884 134 2e-26 seq8631 129 7e-25 seq254652 118 1e-21 seq92275 105 8e-18 >seq107965 Length=6474 Score = 311 bits (344), Expect = 1e-79 Identities = 421/587 (72%), Gaps = 0/587 (0%) Strand=Plus/Plus Query 155137 TATGGTAACAACATCATCTCTGGTGCTGTTGTCCCTAGTTCAAACGCAATTGGTCTCCAC 155196 ||||| ||||| || || | ||| | || | |||| ||| || || ||| | || Sbjct 5876 TATGGAAACAATATTATTTTAGGTACCATTATTCCTATTTCTGCAGCTATAGGTTTGCAT 5935 Query 155197 TTCTATCCTATTTGGGAAGCAGCAACTCTTGATGAGTGGTTGTACAATGGTGGTCCTTTC 155256 || || || || ||||||||| || || ||||||| ||||| |||||||||||||||| Sbjct 5936 TTTTACCCAATATGGGAAGCAACATCTGTTGATGAATGGTTATACAATGGTGGTCCTTAT 5995 Query 155257 CAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGTGGTCGTCAGTGGGAA 155316 |||| | || | |||||| | | || | | ||| |||||| |||||||| Sbjct 5996 GAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAA 6055 Query 155317 CTTTCTTACCGTCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCT 155376 ||| || ||||| || ||||| ||||||| ||||||||| || || || || | Sbjct 6056 CTTAGTTTTCGTCTGGGTATGCGAACTTGGATGGTTGTTGCATATTCAGCTCCTGTTGCA 6115 Query 155377 GCTGCGTTCGCTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCGATG 155436 |||||| | ||| ||| | | || || | |||||||| || ||||||| ||| Sbjct 6116 GCTGCGAGTGTTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATG 6175 Query 155437 CCTCTTGGTATCTCTGGTACTTTTAACTATATGTTCGTGTTCCAAGCAGAACACAATATC 155496 ||||| || || ||||||||||| |||| ||| | || ||||| || || ||||| || Sbjct 6176 CCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATT 6235 Query 155497 CTTATGCACCCCTTCCACATGCTTGGAGTAGCAGGTGTGTTCGGTGGATCTCTTTTCTCT 155556 ||||||||||| || |||||||| || ||||| ||||| |||| || || || ||| | Sbjct 6236 CTTATGCACCCATTTCACATGCTAGGTGTAGCTGGTGTAATCGGCGGCTCCCTATTCAGT 6295 Query 155557 GCTATGCACGGTTCATTGGTGACATCTTCACTAATCCGTGAAACTACTGAGCAAGAGTCT 155616 |||||||| ||||| ||||| || |||| | ||| | ||||| || || | | ||| Sbjct 6296 GCTATGCATGGTTCCTTGGTAACCTCTTGTTTGATCAGGGAAACCACAGAAAATAAATCT 6355 Query 155617 CAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAACTTATAACATTGTTGCTGCTCAT 155676 || | ||||||| || || | |||||| ||||||||||| || || || | |||| Sbjct 6356 GCTAATGAAGGTTACAGATTTGGTCTAGAAGATGAAACTTATAATATCGTAGCCGTTCAT 6415 Query 155677 GGATACTTCGGTCGTCTTATCTTCCAGTATGCATCCTTCAACAACTC 155723 || || || || || | |||||||| ||||| ||||||||||| Sbjct 6416 GGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTC 6462 >seq169634 Length=720 Score = 215 bits (238), Expect = 6e-51 Identities = 319/452 (71%), Gaps = 0/452 (0%) Strand=Plus/Minus Query 154993 GACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTATGATCCCTTGCCTCCTCGCTGCT 155052 || ||||| | || | || ||||| |||||| | ||||||||| | | | | || Sbjct 453 GAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCA 394 Query 155053 GCTACATGCTTCATTGTCGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGTATTCGT 155112 || | || ||| |||| ||||||||||| ||||| || || ||||||||||||||| Sbjct 393 ACTTCTGTATTTATTATCGCTTTCATTGCTGCTCCTCCAGTGGATATTGATGGTATTCGT 334 Query 155113 GAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCT 155172 ||||| || ||| ||| ||| ||||| ||||| || || || |||| || | ||| Sbjct 333 GAACCTGTTTATGGATCTCTAAGTTATGGAAACAATATTATTTCAGGTGTCATTATTCCT 274 Query 155173 AGTTCAAACGCAATTGGTCTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTTGATGAG 155232 | ||| || || ||| | || || || || || |||||||||||| | ||||||| Sbjct 273 ACTTCTGCAGCTATAGGTTTGCATTTTTACCCAATATGGGAAGCAGCATCCGTTGATGAA 214 Query 155233 TGGTTGTACAATGGTGGTCCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACA 155292 ||||| |||||||||||||||| |||| | || | |||||| | | || | | Sbjct 213 TGGTTATACAATGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCT 154 Query 155293 GCATACTGTGGTCGTCAGTGGGAACTTTCTTACCGTCTTGGCATGCGTCCTTGGATCTGT 155352 ||| |||||| ||||||||||| || |||||| || ||||| |||||||| | Sbjct 153 TGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGACCTTGGATTGTT 94 Query 155353 GTTGCATACTCTGCACCAGTATCTGCTGCGTTCGCTGTATTCCTTGTTTATCCTTTCGGT 155412 |||||||| || || | || | ||||| ||||| ||| | | || || | ||| Sbjct 93 GTTGCATATTCAGCTTCTGTTGCAGCTGCAACTGCTGTTTTCTTGATCTACCCAATTGGT 34 Query 155413 CAAGGTTCTTTCTCTGATGCGATGCCTCTTGG 155444 ||||| || ||||||| |||||||| || Sbjct 33 CAAGGAAGCTTTTCTGATGGTATGCCTCTAGG 2 >seq300680 Length=3790 Score = 188 bits (208), Expect = 8e-43 Identities = 225/303 (74%), Gaps = 2/303 (1%) Strand=Plus/Minus Query 155422 TTCTCTGATGCGATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTTCGTGTTCCAA 155481 || ||||||| |||||||| || || ||||||||||| |||| ||| | || ||||| Sbjct 670 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 611 Query 155482 GCAGAACACAATATCCTTATGCACCCCTTCCACATGCTTGGAGTAGCAGGTGTGTTCGGT 155541 | || ||||| || ||||||||||| || |||||||| | ||||| ||||| ||| Sbjct 610 GTTGAGCACAACATTCTTATGCACCCATTTCACATGCTAAGCGTAGCTGGTGTACTCGTC 551 Query 155542 GGATCTCTTTTCTCTGCTATGCACGGTTCATTGGTGACATCTTCACTAATCCGTGAAACT 155601 | || || || ||||||||| ||||| ||||| || ||| ||||| | ||||| Sbjct 550 AGCTCCCTATTTAATGCTATGCATGGTTCCTTGGTAACCTCTAGTTTAATCAG-GAAACC 492 Query 155602 ACTGAGCAAGAGTCTCAGAACTATGGTTACAAGTTCGGACAAGAAGAAG-AAACTTATAA 155660 | || | || | | || | |||||||| ||||| |||||||||| |||||||||| Sbjct 491 AGAGAAAATGAATTTGCTAATGAAGGTTACAAATTCGGTCAAGAAGAAGAAAACTTATAA 432 Query 155661 CATTGTTGCTGCTCATGGATACTTCGGTCGTCTTATCTTCCAGTATGCATCCTTCAACAA 155720 || || || |||||||| || || || || | ||||||||||||| |||||||| Sbjct 431 TATCGTAGCCGCTCATGGTTATTTTGGCCGATTGGTCTTCCAGTATGCTAGTTTCAACAA 372 Query 155721 CTC 155723 ||| Sbjct 371 CTC 369 >seq250312 Length=8481 Score = 183 bits (202), Expect = 4e-41 Identities = 317/462 (69%), Gaps = 9/462 (2%) Strand=Plus/Plus Query 155485 GAACACAATATCCTTATGCACCCCTTCCACATGCTTGGAGTAGCAGGTGTGTTCGGTGGA 155544 || ||||| || |||| |||| | || |||||||| || ||||| ||||| | || | Sbjct 1574 GAGCACAACATTCTTAGGCACTCATTTCACATGCTAGGCGTAGCTGGTGTAATTGGCAGC 1633 Query 155545 TCTCTTTTCTCTGCTATGCACGGTTCATTGGTGACATCTTCACTAATCCGTGAAACTACT 155604 || || ||| |||||||| ||||| ||||| || || | ||| | ||||| || Sbjct 1634 TCCCTATTCAGTGCTATGCGTGGTTCCTTGGTAACCCCTAGTTTGATCAGGGAAACCACA 1693 Query 155605 GAGCAAGAGTCTCAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAACTTATAACATT 155664 || | || | || | ||||| | ||||| ||||||| ||||| ||| || ||| Sbjct 1694 AAGAATGAATAAGCTAATGAAGGTTATATATTCGGTCAAGAAGGAGAAAATTAGAATATT 1753 Query 155665 GTTGCTGCTCATGGATACTTCGGTCGTCTTATCTTCCAGTATGCATCCTTCAACAACTCA 155724 || || |||||||| || || ||||| | ||||||| |||| |||||||||||| Sbjct 1754 GTAGCCGCTCATGGTTATTTTGGTCGATTGATCTTCCGACATGCTAGTTTCAACAACTCA 1813 Query 155725 AGAAGTCTTCACTTCTTCCTTGCTGCATGGCCTGTGGTCTGCATCTGGGCAACTGCTATG 155784 | | | || |||||||| ||| | |||||| |||||| | || | Sbjct 1814 CGTTTTTTACATTTCTTCCTAGCTACTTGGCCT---------ATCTGGTTTATTGTGTTA 1864 Query 155785 GGTGTGTCAACGATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTAGAC 155844 ||| | || ||||| | |||||| || ||||| | ||| | || |||||||| ||| Sbjct 1865 GGTATCAGCACTATGGCTTACAACCTAAATGGTTTTAGTTTCCATCAATCTGTAGTCGAC 1924 Query 155845 GCTAGTGGTAAAGTCATCCCTACATGGGCAGACATTCTTAACCGCGCTGGTCTTGGTATG 155904 | || | || || ||| ||||| || || ||||| | ||| ||||||||| Sbjct 1925 AGTCAATGTCATGTAATTAATACTTGGGCTGATATCATTAACTGTGCTAACCTTGGTATG 1984 Query 155905 GAAGTAATGCACGAGCGTAACGCTCACAACTTCCCTCTTGAC 155946 ||||| ||| | || |||| ||||| || |||||||| ||| Sbjct 1985 GAAGTTATGTATGAATGTAATGCTCATAATTTCCCTCTAGAC 2026 >seq10884 Length=5042 Score = 134 bits (148), Expect = 2e-26 Identities = 127/162 (78%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 155422 TTCTCTGATGCGATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTTCGTGTTCCAA 155481 || ||||||| |||||||| || || ||||||||||| |||| ||| | || ||||| Sbjct 3789 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 3848 Query 155482 GCAGAACACAATATCCTTATGCACCCCTTCCACATGCTTGGAGTAGCAGGTGTGTTCGGT 155541 || || ||||| || ||||||||||| || |||||||| || ||||| ||||| ||||| Sbjct 3849 GCTGAGCACAACATTCTTATGCACCCATTTCACATGCTAGGCGTAGCTGGTGTATTCGGC 3908 Query 155542 GGATCTCTTTTCTCTGCTATGCACGGTTCATTGGTGACATCT 155583 || || || ||| |||||| || ||||| | ||| || ||| Sbjct 3909 GGCTCCCTATTCATTGCTATACATGGTTCCTCGGTAACCTCT 3950 >seq8631 Length=609 Score = 129 bits (142), Expect = 7e-25 Identities = 124/158 (78%), Gaps = 1/158 (1%) Strand=Plus/Minus Query 155427 TGATGCGATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTTCGTGTTCCAAGCAGA 155486 ||||| |||||||| || || ||||||||||| |||| ||| | || ||||| || || Sbjct 330 TGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCCGA 271 Query 155487 ACACAATATCCTTATGCACCCCTTCCACATGCTTGGAGTAGCAGGTGTGTTCGGTGGATC 155546 ||||| || ||||||||||| || |||||||| | ||||| ||||| ||||| || || Sbjct 270 GCACAACATTCTTATGCACCCATTTCACATGCTAGACGTAGCTGGTGTATTCGGCGGCTC 211 Query 155547 TCT-TTTCTCTGCTATGCACGGTTCATTGGTGACATCT 155583 || ||| ||||||||| ||||| ||||| || ||| Sbjct 210 CCTAATTCAGTGCTATGCATGGTTCCTTGGTAACCTCT 173 Score = 91.5 bits (100), Expect = 2e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 155194 CACTTCTATCCTATTTGGGAAGCAGCAACTCTTGATGAGTGGTTGTACAATGGTGGTCCT 155253 || || || || || |||||||||||| | ||||||| ||||| ||||||||||||||| Sbjct 497 CATTTTTACCCAATATGGGAAGCAGCATCCATTGATGAATGGTTATACAATGGTGGTCCT 438 Query 155254 TTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGTGGTCGTCAGTGG 155313 | |||| | || | |||||| | | || | | ||| |||||| ||||| Sbjct 437 TATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGG 378 Query 155314 GAACTTTCTTACCGTCTTGGCATGCGTCCTTGGAT 155348 |||||| || |||||| | ||||| |||||||| Sbjct 377 GAACTTAGTTTCCGTCTGGATATGCGCCCTTGGAT 343 >seq254652 Length=6058 Score = 118 bits (130), Expect = 1e-21 Identities = 201/290 (69%), Gaps = 1/290 (0%) Strand=Plus/Plus Query 155094 AGACATTGATGGTATTCGTGAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACATCAT 155153 ||| ||||||||||||| |||||| | | ||| || | ||||| ||||| || || Sbjct 668 AGATATTGATGGTATTCATGAACCTATTTTTACATCTCTACTTTATGGAAACAATATTAT 727 Query 155154 CTCTGGTGCTGTTGTCCCTAGTTCAAACGCAATTGGTCTCCACTTCTATCCTATTTGGGA 155213 || |||| |||| | |||| ||| | || | ||| | || || || | || | ||| Sbjct 728 TTCAGGTGTTGTTATTCCTACTTCTACAGCTACAGGTTTGCATTTTTACCTAATATAGGA 787 Query 155214 AGCAGCAACTCTTGATGAGTGG-TTGTACAATGGTGGTCCTTTCCAACTTGTAGTCTTCC 155272 |||| || | ||||||| ||| || |||||||||||||||| |||| | || | | Sbjct 788 AGCAACATTTGTTGATGAATGGTTTATACAATGGTGGTCCTTATGAACTAATTGTACTAC 847 Query 155273 ACTTCCTTATCGGAATCACAGCATACTGTGGTCGTCAGTGGGAACTTTCTTACCGTCTTG 155332 ||||| | | || | | ||| ||||| ||||||||||| || |||||| | Sbjct 848 ACTTCTTACTTGGTGTAGCGTGTTACATGGGTCGCGAGTGGGAACTTAGTTTCCGTCTGG 907 Query 155333 GCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCTGCG 155382 | |||| |||| ||| ||||||||| || || || | | |||||| Sbjct 908 GTGTGCGACCTTTGATTGTTGTTGCATATTCAGCTCCTATTACAGCTGCG 957 >seq92275 Length=5108 Score = 105 bits (116), Expect = 8e-18 Identities = 124/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 155010 CGGTTGGTTCGGTGTTCTTATGATCCCTTGCCTCCTCGCTGCTGCTACATGCTTCATTGT 155069 ||| ||||| |||||| | ||||||||| ||| | | || || | || ||| | Sbjct 4789 CGGATGGTTTGGTGTTTTGATGATCCCTACCCTATTGACCGCAACTTCTGTATTTATTAT 4730 Query 155070 CGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGTATTCGTGAACCCGTCGCTGGTTC 155129 |||||||||| ||| ||||| ||||| |||||||||||||||||||| || |||| || Sbjct 4729 TGCCTTCATTGATGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATC 4670 Query 155130 TTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCTAGTTC 155177 | || | || | || || || ||||| ||||| || | |||| ||| Sbjct 4669 TCTACTTTACGAAAATAATATTATCTCGGGTGCCATTATTCCTACTTC 4622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 581443843021360