Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27]
463,906 sequences; 661,937,708 total letters
Query= NC_020875.1
Length=182801
Score E
Sequences producing significant alignments: (Bits) Value
seq107965 311 1e-79
seq169634 215 6e-51
seq300680 188 8e-43
seq250312 183 4e-41
seq10884 134 2e-26
seq8631 129 7e-25
seq254652 118 1e-21
seq92275 105 8e-18
>seq107965
Length=6474
Score = 311 bits (344), Expect = 1e-79
Identities = 421/587 (72%), Gaps = 0/587 (0%)
Strand=Plus/Plus
Query 155137 TATGGTAACAACATCATCTCTGGTGCTGTTGTCCCTAGTTCAAACGCAATTGGTCTCCAC 155196
||||| ||||| || || | ||| | || | |||| ||| || || ||| | ||
Sbjct 5876 TATGGAAACAATATTATTTTAGGTACCATTATTCCTATTTCTGCAGCTATAGGTTTGCAT 5935
Query 155197 TTCTATCCTATTTGGGAAGCAGCAACTCTTGATGAGTGGTTGTACAATGGTGGTCCTTTC 155256
|| || || || ||||||||| || || ||||||| ||||| ||||||||||||||||
Sbjct 5936 TTTTACCCAATATGGGAAGCAACATCTGTTGATGAATGGTTATACAATGGTGGTCCTTAT 5995
Query 155257 CAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGTGGTCGTCAGTGGGAA 155316
|||| | || | |||||| | | || | | ||| |||||| ||||||||
Sbjct 5996 GAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAA 6055
Query 155317 CTTTCTTACCGTCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCT 155376
||| || ||||| || ||||| ||||||| ||||||||| || || || || |
Sbjct 6056 CTTAGTTTTCGTCTGGGTATGCGAACTTGGATGGTTGTTGCATATTCAGCTCCTGTTGCA 6115
Query 155377 GCTGCGTTCGCTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCGATG 155436
|||||| | ||| ||| | | || || | |||||||| || ||||||| |||
Sbjct 6116 GCTGCGAGTGTTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATG 6175
Query 155437 CCTCTTGGTATCTCTGGTACTTTTAACTATATGTTCGTGTTCCAAGCAGAACACAATATC 155496
||||| || || ||||||||||| |||| ||| | || ||||| || || ||||| ||
Sbjct 6176 CCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATT 6235
Query 155497 CTTATGCACCCCTTCCACATGCTTGGAGTAGCAGGTGTGTTCGGTGGATCTCTTTTCTCT 155556
||||||||||| || |||||||| || ||||| ||||| |||| || || || ||| |
Sbjct 6236 CTTATGCACCCATTTCACATGCTAGGTGTAGCTGGTGTAATCGGCGGCTCCCTATTCAGT 6295
Query 155557 GCTATGCACGGTTCATTGGTGACATCTTCACTAATCCGTGAAACTACTGAGCAAGAGTCT 155616
|||||||| ||||| ||||| || |||| | ||| | ||||| || || | | |||
Sbjct 6296 GCTATGCATGGTTCCTTGGTAACCTCTTGTTTGATCAGGGAAACCACAGAAAATAAATCT 6355
Query 155617 CAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAACTTATAACATTGTTGCTGCTCAT 155676
|| | ||||||| || || | |||||| ||||||||||| || || || | ||||
Sbjct 6356 GCTAATGAAGGTTACAGATTTGGTCTAGAAGATGAAACTTATAATATCGTAGCCGTTCAT 6415
Query 155677 GGATACTTCGGTCGTCTTATCTTCCAGTATGCATCCTTCAACAACTC 155723
|| || || || || | |||||||| ||||| |||||||||||
Sbjct 6416 GGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTC 6462
>seq169634
Length=720
Score = 215 bits (238), Expect = 6e-51
Identities = 319/452 (71%), Gaps = 0/452 (0%)
Strand=Plus/Minus
Query 154993 GACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTATGATCCCTTGCCTCCTCGCTGCT 155052
|| ||||| | || | || ||||| |||||| | ||||||||| | | | | ||
Sbjct 453 GAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCA 394
Query 155053 GCTACATGCTTCATTGTCGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGTATTCGT 155112
|| | || ||| |||| ||||||||||| ||||| || || |||||||||||||||
Sbjct 393 ACTTCTGTATTTATTATCGCTTTCATTGCTGCTCCTCCAGTGGATATTGATGGTATTCGT 334
Query 155113 GAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCT 155172
||||| || ||| ||| ||| ||||| ||||| || || || |||| || | |||
Sbjct 333 GAACCTGTTTATGGATCTCTAAGTTATGGAAACAATATTATTTCAGGTGTCATTATTCCT 274
Query 155173 AGTTCAAACGCAATTGGTCTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTTGATGAG 155232
| ||| || || ||| | || || || || || |||||||||||| | |||||||
Sbjct 273 ACTTCTGCAGCTATAGGTTTGCATTTTTACCCAATATGGGAAGCAGCATCCGTTGATGAA 214
Query 155233 TGGTTGTACAATGGTGGTCCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACA 155292
||||| |||||||||||||||| |||| | || | |||||| | | || | |
Sbjct 213 TGGTTATACAATGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCT 154
Query 155293 GCATACTGTGGTCGTCAGTGGGAACTTTCTTACCGTCTTGGCATGCGTCCTTGGATCTGT 155352
||| |||||| ||||||||||| || |||||| || ||||| |||||||| |
Sbjct 153 TGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGACCTTGGATTGTT 94
Query 155353 GTTGCATACTCTGCACCAGTATCTGCTGCGTTCGCTGTATTCCTTGTTTATCCTTTCGGT 155412
|||||||| || || | || | ||||| ||||| ||| | | || || | |||
Sbjct 93 GTTGCATATTCAGCTTCTGTTGCAGCTGCAACTGCTGTTTTCTTGATCTACCCAATTGGT 34
Query 155413 CAAGGTTCTTTCTCTGATGCGATGCCTCTTGG 155444
||||| || ||||||| |||||||| ||
Sbjct 33 CAAGGAAGCTTTTCTGATGGTATGCCTCTAGG 2
>seq300680
Length=3790
Score = 188 bits (208), Expect = 8e-43
Identities = 225/303 (74%), Gaps = 2/303 (1%)
Strand=Plus/Minus
Query 155422 TTCTCTGATGCGATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTTCGTGTTCCAA 155481
|| ||||||| |||||||| || || ||||||||||| |||| ||| | || |||||
Sbjct 670 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 611
Query 155482 GCAGAACACAATATCCTTATGCACCCCTTCCACATGCTTGGAGTAGCAGGTGTGTTCGGT 155541
| || ||||| || ||||||||||| || |||||||| | ||||| ||||| |||
Sbjct 610 GTTGAGCACAACATTCTTATGCACCCATTTCACATGCTAAGCGTAGCTGGTGTACTCGTC 551
Query 155542 GGATCTCTTTTCTCTGCTATGCACGGTTCATTGGTGACATCTTCACTAATCCGTGAAACT 155601
| || || || ||||||||| ||||| ||||| || ||| ||||| | |||||
Sbjct 550 AGCTCCCTATTTAATGCTATGCATGGTTCCTTGGTAACCTCTAGTTTAATCAG-GAAACC 492
Query 155602 ACTGAGCAAGAGTCTCAGAACTATGGTTACAAGTTCGGACAAGAAGAAG-AAACTTATAA 155660
| || | || | | || | |||||||| ||||| |||||||||| ||||||||||
Sbjct 491 AGAGAAAATGAATTTGCTAATGAAGGTTACAAATTCGGTCAAGAAGAAGAAAACTTATAA 432
Query 155661 CATTGTTGCTGCTCATGGATACTTCGGTCGTCTTATCTTCCAGTATGCATCCTTCAACAA 155720
|| || || |||||||| || || || || | ||||||||||||| ||||||||
Sbjct 431 TATCGTAGCCGCTCATGGTTATTTTGGCCGATTGGTCTTCCAGTATGCTAGTTTCAACAA 372
Query 155721 CTC 155723
|||
Sbjct 371 CTC 369
>seq250312
Length=8481
Score = 183 bits (202), Expect = 4e-41
Identities = 317/462 (69%), Gaps = 9/462 (2%)
Strand=Plus/Plus
Query 155485 GAACACAATATCCTTATGCACCCCTTCCACATGCTTGGAGTAGCAGGTGTGTTCGGTGGA 155544
|| ||||| || |||| |||| | || |||||||| || ||||| ||||| | || |
Sbjct 1574 GAGCACAACATTCTTAGGCACTCATTTCACATGCTAGGCGTAGCTGGTGTAATTGGCAGC 1633
Query 155545 TCTCTTTTCTCTGCTATGCACGGTTCATTGGTGACATCTTCACTAATCCGTGAAACTACT 155604
|| || ||| |||||||| ||||| ||||| || || | ||| | ||||| ||
Sbjct 1634 TCCCTATTCAGTGCTATGCGTGGTTCCTTGGTAACCCCTAGTTTGATCAGGGAAACCACA 1693
Query 155605 GAGCAAGAGTCTCAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAACTTATAACATT 155664
|| | || | || | ||||| | ||||| ||||||| ||||| ||| || |||
Sbjct 1694 AAGAATGAATAAGCTAATGAAGGTTATATATTCGGTCAAGAAGGAGAAAATTAGAATATT 1753
Query 155665 GTTGCTGCTCATGGATACTTCGGTCGTCTTATCTTCCAGTATGCATCCTTCAACAACTCA 155724
|| || |||||||| || || ||||| | ||||||| |||| ||||||||||||
Sbjct 1754 GTAGCCGCTCATGGTTATTTTGGTCGATTGATCTTCCGACATGCTAGTTTCAACAACTCA 1813
Query 155725 AGAAGTCTTCACTTCTTCCTTGCTGCATGGCCTGTGGTCTGCATCTGGGCAACTGCTATG 155784
| | | || |||||||| ||| | |||||| |||||| | || |
Sbjct 1814 CGTTTTTTACATTTCTTCCTAGCTACTTGGCCT---------ATCTGGTTTATTGTGTTA 1864
Query 155785 GGTGTGTCAACGATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTAGAC 155844
||| | || ||||| | |||||| || ||||| | ||| | || |||||||| |||
Sbjct 1865 GGTATCAGCACTATGGCTTACAACCTAAATGGTTTTAGTTTCCATCAATCTGTAGTCGAC 1924
Query 155845 GCTAGTGGTAAAGTCATCCCTACATGGGCAGACATTCTTAACCGCGCTGGTCTTGGTATG 155904
| || | || || ||| ||||| || || ||||| | ||| |||||||||
Sbjct 1925 AGTCAATGTCATGTAATTAATACTTGGGCTGATATCATTAACTGTGCTAACCTTGGTATG 1984
Query 155905 GAAGTAATGCACGAGCGTAACGCTCACAACTTCCCTCTTGAC 155946
||||| ||| | || |||| ||||| || |||||||| |||
Sbjct 1985 GAAGTTATGTATGAATGTAATGCTCATAATTTCCCTCTAGAC 2026
>seq10884
Length=5042
Score = 134 bits (148), Expect = 2e-26
Identities = 127/162 (78%), Gaps = 0/162 (0%)
Strand=Plus/Plus
Query 155422 TTCTCTGATGCGATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTTCGTGTTCCAA 155481
|| ||||||| |||||||| || || ||||||||||| |||| ||| | || |||||
Sbjct 3789 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 3848
Query 155482 GCAGAACACAATATCCTTATGCACCCCTTCCACATGCTTGGAGTAGCAGGTGTGTTCGGT 155541
|| || ||||| || ||||||||||| || |||||||| || ||||| ||||| |||||
Sbjct 3849 GCTGAGCACAACATTCTTATGCACCCATTTCACATGCTAGGCGTAGCTGGTGTATTCGGC 3908
Query 155542 GGATCTCTTTTCTCTGCTATGCACGGTTCATTGGTGACATCT 155583
|| || || ||| |||||| || ||||| | ||| || |||
Sbjct 3909 GGCTCCCTATTCATTGCTATACATGGTTCCTCGGTAACCTCT 3950
>seq8631
Length=609
Score = 129 bits (142), Expect = 7e-25
Identities = 124/158 (78%), Gaps = 1/158 (1%)
Strand=Plus/Minus
Query 155427 TGATGCGATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTTCGTGTTCCAAGCAGA 155486
||||| |||||||| || || ||||||||||| |||| ||| | || ||||| || ||
Sbjct 330 TGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCCGA 271
Query 155487 ACACAATATCCTTATGCACCCCTTCCACATGCTTGGAGTAGCAGGTGTGTTCGGTGGATC 155546
||||| || ||||||||||| || |||||||| | ||||| ||||| ||||| || ||
Sbjct 270 GCACAACATTCTTATGCACCCATTTCACATGCTAGACGTAGCTGGTGTATTCGGCGGCTC 211
Query 155547 TCT-TTTCTCTGCTATGCACGGTTCATTGGTGACATCT 155583
|| ||| ||||||||| ||||| ||||| || |||
Sbjct 210 CCTAATTCAGTGCTATGCATGGTTCCTTGGTAACCTCT 173
Score = 91.5 bits (100), Expect = 2e-13
Identities = 113/155 (73%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 155194 CACTTCTATCCTATTTGGGAAGCAGCAACTCTTGATGAGTGGTTGTACAATGGTGGTCCT 155253
|| || || || || |||||||||||| | ||||||| ||||| |||||||||||||||
Sbjct 497 CATTTTTACCCAATATGGGAAGCAGCATCCATTGATGAATGGTTATACAATGGTGGTCCT 438
Query 155254 TTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGTGGTCGTCAGTGG 155313
| |||| | || | |||||| | | || | | ||| |||||| |||||
Sbjct 437 TATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGG 378
Query 155314 GAACTTTCTTACCGTCTTGGCATGCGTCCTTGGAT 155348
|||||| || |||||| | ||||| ||||||||
Sbjct 377 GAACTTAGTTTCCGTCTGGATATGCGCCCTTGGAT 343
>seq254652
Length=6058
Score = 118 bits (130), Expect = 1e-21
Identities = 201/290 (69%), Gaps = 1/290 (0%)
Strand=Plus/Plus
Query 155094 AGACATTGATGGTATTCGTGAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACATCAT 155153
||| ||||||||||||| |||||| | | ||| || | ||||| ||||| || ||
Sbjct 668 AGATATTGATGGTATTCATGAACCTATTTTTACATCTCTACTTTATGGAAACAATATTAT 727
Query 155154 CTCTGGTGCTGTTGTCCCTAGTTCAAACGCAATTGGTCTCCACTTCTATCCTATTTGGGA 155213
|| |||| |||| | |||| ||| | || | ||| | || || || | || | |||
Sbjct 728 TTCAGGTGTTGTTATTCCTACTTCTACAGCTACAGGTTTGCATTTTTACCTAATATAGGA 787
Query 155214 AGCAGCAACTCTTGATGAGTGG-TTGTACAATGGTGGTCCTTTCCAACTTGTAGTCTTCC 155272
|||| || | ||||||| ||| || |||||||||||||||| |||| | || | |
Sbjct 788 AGCAACATTTGTTGATGAATGGTTTATACAATGGTGGTCCTTATGAACTAATTGTACTAC 847
Query 155273 ACTTCCTTATCGGAATCACAGCATACTGTGGTCGTCAGTGGGAACTTTCTTACCGTCTTG 155332
||||| | | || | | ||| ||||| ||||||||||| || |||||| |
Sbjct 848 ACTTCTTACTTGGTGTAGCGTGTTACATGGGTCGCGAGTGGGAACTTAGTTTCCGTCTGG 907
Query 155333 GCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCTGCG 155382
| |||| |||| ||| ||||||||| || || || | | ||||||
Sbjct 908 GTGTGCGACCTTTGATTGTTGTTGCATATTCAGCTCCTATTACAGCTGCG 957
>seq92275
Length=5108
Score = 105 bits (116), Expect = 8e-18
Identities = 124/168 (74%), Gaps = 0/168 (0%)
Strand=Plus/Minus
Query 155010 CGGTTGGTTCGGTGTTCTTATGATCCCTTGCCTCCTCGCTGCTGCTACATGCTTCATTGT 155069
||| ||||| |||||| | ||||||||| ||| | | || || | || ||| |
Sbjct 4789 CGGATGGTTTGGTGTTTTGATGATCCCTACCCTATTGACCGCAACTTCTGTATTTATTAT 4730
Query 155070 CGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGTATTCGTGAACCCGTCGCTGGTTC 155129
|||||||||| ||| ||||| ||||| |||||||||||||||||||| || |||| ||
Sbjct 4729 TGCCTTCATTGATGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATC 4670
Query 155130 TTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCTAGTTC 155177
| || | || | || || || ||||| ||||| || | |||| |||
Sbjct 4669 TCTACTTTACGAAAATAATATTATCTCGGGTGCCATTATTCCTACTTC 4622
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 581443843021360
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