Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq107965 253 6e-63 seq169634 203 9e-48 seq300680 149 2e-31 seq250312 141 3e-29 seq10884 122 2e-23 seq8631 113 1e-20 seq231965 95.1 3e-15 seq254652 87.8 5e-13 >seq107965 Length=6474 Score = 253 bits (280), Expect = 6e-63 Identities = 410/587 (70%), Gaps = 6/587 (1%) Strand=Plus/Minus Query 40764 TTGTTGAATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATG 40823 |||||||| ||||||||| || || | || ||||| ||||| || | |||||||| Sbjct 6459 TTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAACGGCTACGATA 6400 Query 40824 TTATAAGTCTCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGTG 40883 |||||||| || |||| ||||||| | || || | || |||| | |||| ||| Sbjct 6399 TTATAAGTTTCATCTTCTAGACCAAATCTGTAACCTTCATTAGCAGATTTATTTTCTGTG 6340 Query 40884 GTCTCCCGAATGATTGAGGAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGCACCA 40943 || |||| || | | || || || | | || ||||||||| || | | || Sbjct 6339 GTTTCCCTGATCAAACAAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCG 6280 Query 40944 CCAAAGACGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCT 41003 || | || || || || || ||||| || ||||||||||| ||||||||||| || || Sbjct 6279 CCGATTACACCAGCTACACCTAGCATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGCC 6220 Query 41004 TGGAAGACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAGAAA 41063 ||||| |||| |||||||||||| || ||| ||||||| ||||||||||||||| || Sbjct 6219 TGGAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAG 6160 Query 41064 GAACCCTGACCGAATGGATAAACTAAGAATACAGCTAGAGCTGCTGACAATGGAGCTGTG 41123 || ||||| | ||| || | ||||| ||| | || |||| | ||||||| Sbjct 6159 CTTCCTTGACCAATTGGGTAGATCAAGAAAACAACACTCGCAGCTGCAACAGGAGCTGAA 6100 Query 41124 TATGCCACAAATATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACTGTCTACCA 41183 ||||| |||| ||||| | || |||||| || | | ||||||||||| | ||| Sbjct 6099 TATGCAACAACCATCCAAGTTCGCATACCCAGACGAAAACTAAGTTCCCACTCACGACCC 6040 Query 41184 GCGTATGCTGCTACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTTG 41243 ||| ||||| || | ||| ||||| | ||||| |||| ||| || || || ||| Sbjct 6039 ATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCATTG 5980 Query 41244 TATAGCCACTCGTC--CAG-TGTGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATT 41300 |||| ||| || || ||| ||| |||||||| |||||||| ||||| | || || Sbjct 5979 TATAACCATTCATCAACAGATGTT---GCTTCCCATATTGGGTAAAAATGCAAACCTATA 5923 Query 41301 GCGTTAGAGCTCGGAACGACAGCTCCAGATATAATATTGTTCCCGTA 41347 || ||| | |||| | | || | ||||||||||| || || Sbjct 5922 GCTGCAGAAATAGGAATAATGGTACCTAAAATAATATTGTTTCCATA 5876 >seq169634 Length=720 Score = 203 bits (224), Expect = 9e-48 Identities = 323/461 (70%), Gaps = 2/461 (0%) Strand=Plus/Plus Query 41039 TCCTAAAGGCATACCATCAGAGAAAGAACCCTGACCGAATGGATAAACTAAGAATACAGC 41098 ||||| ||||||||||||||| || || ||||| | ||| || | ||||| ||||| Sbjct 1 TCCTAGAGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGGTAGATCAAGAAAACAGC 60 Query 41099 TAGAGCTGCTGACAATGGAGCTGTGTATGCCACAAATATCCATGGTCTCATACCTAGTCT 41158 || |||| | | ||||| ||||| |||| ||||| |||| |||||| || | Sbjct 61 AGTTGCAGCTGCAACAGAAGCTGAATATGCAACAACAATCCAAGGTCGCATACCCAGACG 120 Query 41159 GTATGAAAGTTCCCACTGTCTACCAGCGTATGCTGCTACTCCTATTAAAAAGTGAAAGAC 41218 | | ||||||||||| | ||| ||| ||||| || | ||| ||||| | || Sbjct 121 GAAACTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAAC 180 Query 41219 AATGAGTTGATATGGTCCGCCGTTGTATAGCCACTCGTCCAGTGTGCCGGCTTCCCAGAT 41278 ||| |||| ||| || || || ||||||| ||| || || | | | |||||||| || Sbjct 181 AATTAGTTCATAAGGACCACCATTGTATAACCATTCATCAACGGATGCTGCTTCCCATAT 240 Query 41279 TGGGTAGAAATGTAGTCCGATTGCGTTAGAGCTCGGAACGACAGCTCCAGATATAATATT 41338 |||||| ||||| | || || || ||| | |||| | | || || |||||||| Sbjct 241 TGGGTAAAAATGCAAACCTATAGCTGCAGAAGTAGGAATAATGACACCTGAAATAATATT 300 Query 41339 GTTCCCGTACATTAACGAGCCGGAAACGGGCTCACGTATGCCATCTATATCTACAGGCGG 41398 ||| || || ||| || || |||| || ||||| || ||||| ||||| || || || Sbjct 301 GTTTCCATAACTTAGAGATCCATAAACAGGTTCACGAATACCATCAATATCCACTGGAGG 360 Query 41399 TGCTGCGATAAAGGCGATTATGAA-ACATGTGGTAGCAGTTAGTAATGCTGGAATCATTA 41457 || || || || ||||| || || ||| | || || || | ||| | || ||||| | Sbjct 361 AGCAGCAATGAAAGCGATAATAAATACA-GAAGTTGCGGTCAATAAGGTAGGGATCATCA 419 Query 41458 GCACACCAAACCAACCTACGTATAGGCGGTTGTCGGTGCTA 41498 ||||||||||| || | ||| || ||||| ||||| ||| Sbjct 420 AAACACCAAACCATCCAATGTAAAGACGGTTTTCGGTACTA 460 >seq300680 Length=3790 Score = 149 bits (164), Expect = 2e-31 Identities = 217/302 (72%), Gaps = 6/302 (2%) Strand=Plus/Plus Query 40764 TTGTTGAATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATG 40823 |||||||| |||||| || || | | || ||||| ||||| || || |||||||| Sbjct 372 TTGTTGAAACTAGCATACTGGAAGACCAATCGGCCAAAATAACCATGAGCGGCTACGATA 431 Query 40824 TTATAAGTCT-CGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGT 40882 |||||||| | | |||| ||||| || || || || | || ||||| |||| | Sbjct 432 TTATAAGTTTTCTTCTTCTTGACCGAATTTGTAACCTTCATTAGCAAATTCATTTTCTCT 491 Query 40883 GGTCTCCCGAATGA--TTGAGGAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGCA 40940 ||| ||| || | | | |||| || ||||| || ||||||||| ||| | | Sbjct 492 GGTTTCCTGATTAAACTAGAGGT--TACCAAGGAA-CCATGCATAGCATTAAATAGGGAG 548 Query 40941 CCACCAAAGACGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCT 41000 | | | || || || |||| ||||| || ||||||||||| ||||||||||| || Sbjct 549 CTGACGAGTACACCAGCTACGCTTAGCATGTGAAATGGGTGCATAAGAATGTTGTGCTCA 608 Query 41001 GCTTGGAAGACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAG 41060 | ||||| |||| |||||||||||| || ||| ||||||| ||||||||||||||| Sbjct 609 ACCTGGAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAA 668 Query 41061 AA 41062 || Sbjct 669 AA 670 >seq250312 Length=8481 Score = 141 bits (156), Expect = 3e-29 Identities = 312/464 (67%), Gaps = 13/464 (3%) Strand=Plus/Minus Query 40538 GTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAGACTCTGTCT 40597 ||||||||| || || ||||| |||| || | ||| ||||||||||| || | | Sbjct 2026 GTCTAGAGGGAAATTATGAGCATTACATTCATACATAACTTCCATACCAAGGTTAGCACA 1967 Query 40598 GTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCTACTACTGACTGGTT 40657 ||||| | ||||||||||||| ||| || | || | | ||| ||||| || || | Sbjct 1966 GTTAATGATATCAGCCCAAGTATTAATTACATGACATTGACTGTCGACTACAGATTGATG 1907 Query 40658 AAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATGGAGGTAAGCCATAT 40717 || |||||||||| ||||| |||||||||| ||||| | | | ||| Sbjct 1906 GAAACTAAAACCATTTAGGTTGTAAGCCATAGTGCTGATACCTA-------ACACAATAA 1854 Query 40718 GCCA-ATAACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCACGGCTATTGTTGAATGAAG 40776 ||| ||| || ||| | | || ||||| |||| ||| |||||||| || Sbjct 1853 ACCAGATA---GGCCAAGTAGCTAGGAAGAAATGTAAAAAACGTGAGTTGTTGAAACTAG 1797 Query 40777 CATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATGTTATAAGTCTCGC 40836 ||| | | || || | || |||||| ||||| || || ||||| || || ||| | || | Sbjct 1796 CATGTCGGAAGATCAATCGACCAAAATAACCATGAGCGGCTACAATATTCTAATTTTCTC 1737 Query 40837 CTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGTGGTCTCCC-GAATG 40895 |||| ||||| || |||| || | || | ||||| | | ||||| |||| || Sbjct 1736 CTTCTTGACCGAATATATAACCTTCATTAGCTTATTCATTCTTTGTGGTTTCCCTGATCA 1677 Query 40896 ATTGAGGAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGCACCACCAAAGACGCCT 40955 | ||| || ||||| || |||||||| || | | | |||| || || Sbjct 1676 AACTAGGGGTTACCAAGG-AACCACGCATAGCACTGAATAGGGAGCTGCCAATTACACCA 1618 Query 40956 GCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTC 40999 || ||||| ||||| || |||| |||| | ||||||||||| || Sbjct 1617 GCTACGCCTAGCATGTGAAATGAGTGCCTAAGAATGTTGTGCTC 1574 >seq10884 Length=5042 Score = 122 bits (134), Expect = 2e-23 Identities = 100/122 (82%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 40941 CCACCAAAGACGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCT 41000 || || || || || || ||||| ||||| || ||||||||||| ||||||||||| || Sbjct 3910 CCGCCGAATACACCAGCTACGCCTAGCATGTGAAATGGGTGCATAAGAATGTTGTGCTCA 3851 Query 41001 GCTTGGAAGACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAG 41060 || ||||| |||| |||||||||||| || ||| ||||||| ||||||||||||||| Sbjct 3850 GCCTGGAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAA 3791 Query 41061 AA 41062 || Sbjct 3790 AA 3789 >seq8631 Length=609 Score = 113 bits (124), Expect = 1e-20 Identities = 111/142 (78%), Gaps = 1/142 (1%) Strand=Plus/Plus Query 40917 CCGTGCATAGCAGCAAACAAAGCA-CCACCAAAGACGCCTGCAACGCCGAGCATATGGAA 40975 || ||||||||| || | | | || || || || || || ||| | ||||| || || Sbjct 189 CCATGCATAGCACTGAATTAGGGAGCCGCCGAATACACCAGCTACGTCTAGCATGTGAAA 248 Query 40976 TGGGTGCATGAGAATGTTGTGTTCTGCTTGGAAGACAAACATGAAGTTGAATGTTCCACT 41035 ||||||||| ||||||||||| || || ||||| |||| |||||||||||| || ||| Sbjct 249 TGGGTGCATAAGAATGTTGTGCTCGGCCTGGAATACAATCATGAAGTTGAAAGTACCAGA 308 Query 41036 GATTCCTAAAGGCATACCATCA 41057 ||||||| ||||||||||||| Sbjct 309 AATTCCTAGAGGCATACCATCA 330 >seq231965 Length=7494 Score = 95.1 bits (104), Expect = 3e-15 Identities = 135/188 (72%), Gaps = 4/188 (2%) Strand=Plus/Minus Query 40959 ACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCTTGGAAGACAAACATG 41018 ||||| ||||| | ||||||||||| ||||||||||| || | | || |||| |||| Sbjct 6766 ACGCCTAGCATGTAAAATGGGTGCATAAGAATGTTGTGCTCAACCTTAAATACAATCATG 6707 Query 41019 AAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAGAAAGAACCCTGACCGAAT 41078 |||||||| || ||| ||||||| ||| ||||||| ||| || | |||| | | Sbjct 6706 AAGTTGAAAGTACCATAAATTCCTAGAGGAATACCATGAGAAAAGCTTCATTGACAAATT 6647 Query 41079 GGATAAACTAAGAATACAGCTAGAGCTGCTG--ACAATGGAGCTGTGTATGCCACAAATA 41136 || || | ||||| ||| | || | || |||| |||||| ||||| |||| | Sbjct 6646 GGGTAGATCAAGAAAACATCAGTCGCAGTTGCAACAA--GAGCTGGATATGCAACAATAA 6589 Query 41137 TCCATGGT 41144 |||| ||| Sbjct 6588 TCCAAGGT 6581 >seq254652 Length=6058 Score = 87.8 bits (96), Expect = 5e-13 Identities = 189/280 (68%), Gaps = 7/280 (3%) Strand=Plus/Minus Query 41115 GGAGCTGTGTATGCCACAAATATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCAC 41174 ||||||| ||||| |||| ||| | |||| || ||| || | | | |||||||||| Sbjct 944 GGAGCTGAATATGCAACAACAATCAAAGGTCGCACACCCAGACGGAAACTAAGTTCCCAC 885 Query 41175 TGTCTACCAGCGTATGCTGCTACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGT 41234 | | ||| ||| ||||| || | ||| ||||| | ||||| |||| ||| || Sbjct 884 TCGCGACCCATGTAACACGCTACACCAAGTAAGAAGTGTAGTACAATTAGTTCATAAGGA 825 Query 41235 CCGCCGTTGTAT-AGCCACTCGT---CCAGTGTGCCGGCTTCCCAGATTGGGTAGAAATG 41290 || || |||||| | ||| || | | | ||| |||||| | ||| |||| ||||| Sbjct 824 CCACCATTGTATAAACCATTCATCAACAAATGT---TGCTTCCTATATTAGGTAAAAATG 768 Query 41291 TAGTCCGATTGCGTTAGAGCTCGGAACGACAGCTCCAGATATAATATTGTTCCCGTACAT 41350 | || | || |||| | |||| ||| | || || ||||||||||| || || | Sbjct 767 CAAACCTGTAGCTGTAGAAGTAGGAATAACAACACCTGAAATAATATTGTTTCCATAAAG 708 Query 41351 TAACGAGCCGGAAACGGGCTCACGTATGCCATCTATATCT 41390 || || ||| || ||| | || ||||| |||||| Sbjct 707 TAGAGATGTAAAAATAGGTTCATGAATACCATCAATATCT 668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 142910760183804