Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq107965 333 3e-86 seq250312 219 5e-52 seq169634 214 2e-50 seq300680 210 2e-49 seq10884 147 2e-30 seq8631 143 3e-29 seq254652 98.7 1e-15 seq36621 95.1 1e-14 seq231965 91.5 2e-13 >seq107965 Length=6474 Score = 333 bits (368), Expect = 3e-86 Identities = 426/587 (73%), Gaps = 0/587 (0%) Strand=Plus/Minus Query 67590 GAGTTGTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACA 67649 |||||||||||| ||||| ||||||||||| || || || || |||||| | || || Sbjct 6462 GAGTTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAACGGCTACG 6403 Query 67650 ATGTTGTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCA 67709 || || ||||| || |||||| | || || ||||||| | || || | | || Sbjct 6402 ATATTATAAGTTTCATCTTCTAGACCAAATCTGTAACCTTCATTAGCAGATTTATTTTCT 6343 Query 67710 GTAGTTTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAA 67769 || ||||| ||||| | | |||| || || | ||||| ||||||||||| || || || Sbjct 6342 GTGGTTTCCCTGATCAAACAAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAG 6283 Query 67770 CCACCGAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCT 67829 || |||| |||||| ||||| || ||||| || |||||||||||||| ||||||||||| Sbjct 6282 CCGCCGATTACACCAGCTACACCTAGCATGTGAAATGGGTGCATAAGAATGTTGTGCTCA 6223 Query 67830 GCTTGGAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAG 67889 || ||||| || | |||| |||| |||||||||||||| || |||||||| | ||||| Sbjct 6222 GCCTGGAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAA 6163 Query 67890 AAAGAACCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCA 67949 || |||||||| | || |||| |||||| ||| | || || | || ||||| Sbjct 6162 AAGCTTCCTTGACCAATTGGGTAGATCAAGAAAACAACACTCGCAGCTGCAACAGGAGCT 6103 Query 67950 GAGTATGCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGA 68009 || ||||| ||| ||||||| |||||||| ||||| || ||||||||||| |||| Sbjct 6102 GAATATGCAACAACCATCCAAGTTCGCATACCCAGACGAAAACTAAGTTCCCACTCACGA 6043 Query 68010 CCACAGTATGCTGTGATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGGTCCACCA 68069 || ||| | | || | | |||||| | || | |||| |||| |||||| Sbjct 6042 CCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCA 5983 Query 68070 TTATACAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAGACCGATT 68129 || || ||||| ||||| | || || ||||||||| || || || || || | ||| || Sbjct 5982 TTGTATAACCATTCATCAACAGATGTTGCTTCCCATATTGGGTAAAAATGCAAACCTATA 5923 Query 68130 GCGTTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTA 68176 || ||| |||||| || | ||| |||| || ||||| || || Sbjct 5922 GCTGCAGAAATAGGAATAATGGTACCTAAAATAATATTGTTTCCATA 5876 >seq250312 Length=8481 Score = 219 bits (242), Expect = 5e-52 Identities = 325/462 (70%), Gaps = 9/462 (2%) Strand=Plus/Minus Query 67367 GTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAAGTCCTGCTCT 67426 ||| |||||||| || ||||| |||| || | |||||||||||| ||||| || | Sbjct 2026 GTCTAGAGGGAAATTATGAGCATTACATTCATACATAACTTCCATACCAAGGTTAGCACA 1967 Query 67427 GTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGCGTCAACGACGGATTGGTT 67486 ||||| ||| || ||||||||| ||| || | || ||| || || ||||| | Sbjct 1966 GTTAATGATATCAGCCCAAGTATTAATTACATGACATTGACTGTCGACTACAGATTGATG 1907 Query 67487 GAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTGCAGTGAACCAGAT 67546 ||| | ||||| || |||||| | |||||||| | ||| | || | |||||||| Sbjct 1906 GAAACTAAAACCATTTAGGTTGTAAGCCATAGTGCTGATACCTAACACAATAAACCAGAT 1847 Query 67547 GCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTTGAGTTGTTGAAAGATGC 67606 ||| | | ||| |||||||| || | | | ||||||||||||| || Sbjct 1846 ---------AGGCCAAGTAGCTAGGAAGAAATGTAAAAAACGTGAGTTGTTGAAACTAGC 1796 Query 67607 ATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATGTTGTAAGTCTCTTC 67666 || |||||||||| ||||| || || |||||||| || ||||| || ||| | ||| | Sbjct 1795 ATGTCGGAAGATCAATCGACCAAAATAACCATGAGCGGCTACAATATTCTAATTTTCTCC 1736 Query 67667 TTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTAGTTTCTCTGATAAG 67726 |||||| ||||| | ||||| | || | | || | || || ||||| ||||| | Sbjct 1735 TTCTTGACCGAATATATAACCTTCATTAGCTTATTCATTCTTTGTGGTTTCCCTGATCAA 1676 Query 67727 AGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCACCGAATACACCTGC 67786 | || || || | ||||| |||||||||| || || || | || | |||||| || Sbjct 1675 ACTAGGGGTTACCAAGGAACCACGCATAGCACTGAATAGGGAGCTGCCAATTACACCAGC 1616 Query 67787 TACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTC 67828 ||| || ||||| || |||| |||| |||| ||||||||||| Sbjct 1615 TACGCCTAGCATGTGAAATGAGTGCCTAAGAATGTTGTGCTC 1574 >seq169634 Length=720 Score = 214 bits (236), Expect = 2e-50 Identities = 309/436 (71%), Gaps = 0/436 (0%) Strand=Plus/Plus Query 67869 CCAAGAGGCATTGCGTCAGAGAAAGAACCTTGACCGAAAGGATAGACCAAGAACACAGCG 67928 || |||||||| | ||||| || |||||||| | || |||| |||||| ||||| Sbjct 2 CCTAGAGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCA 61 Query 67929 AATGCTGCAGACACTGGAGCAGAGTATGCTACACAGATCCAAGGACGCATACCAAGACGG 67988 ||| || | || | ||| || ||||| ||| |||||||| |||||||| |||||| Sbjct 62 GTTGCAGCTGCAACAGAAGCTGAATATGCAACAACAATCCAAGGTCGCATACCCAGACGG 121 Query 67989 TAAGAAAGTTCCCACTGACGACCACAGTATGCTGTGATTCCGATAAGGAAGTGGAAGACT 68048 || ||||||||||| |||||| ||| | | || | | |||||| | || Sbjct 122 AAACTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACA 181 Query 68049 ACAAGTTGGAAAGGTCCACCATTATACAACCACTCATCTAGAGTTGCTGCTTCCCAGATA 68108 | |||| |||| |||||||| || ||||| ||||| | | |||||||||||| || Sbjct 182 ATTAGTTCATAAGGACCACCATTGTATAACCATTCATCAACGGATGCTGCTTCCCATATT 241 Query 68109 GGATAGAAGTGAAGACCGATTGCGTTTGAACTAGGAACAACAGCACCAGAAATGATGTTG 68168 || || || || | ||| || || ||| |||||| || |||| ||||| || ||| Sbjct 242 GGGTAAAAATGCAAACCTATAGCTGCAGAAGTAGGAATAATGACACCTGAAATAATATTG 301 Query 68169 TTACCGTACATGAGCGAACCTGCAACAGGTTCTCTGATACCATCGATATCAACTGGAGGT 68228 || || || | || || || ||||||||| | |||||||| ||||| |||||||| Sbjct 302 TTTCCATAACTTAGAGATCCATAAACAGGTTCACGAATACCATCAATATCCACTGGAGGA 361 Query 68229 GCTGCAATGAATGCAATGATGAAGCAAGTTGCTGCTGCGAGCAAGCAAGGAATCATCAAC 68288 || |||||||| || || || || || | ||| | | ||| ||| |||||||| Sbjct 362 GCAGCAATGAAAGCGATAATAAATACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAA 421 Query 68289 ACACCGAACCAACCAA 68304 ||||| ||||| |||| Sbjct 422 ACACCAAACCATCCAA 437 >seq300680 Length=3790 Score = 210 bits (232), Expect = 2e-49 Identities = 230/303 (76%), Gaps = 2/303 (1%) Strand=Plus/Plus Query 67590 GAGTTGTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACA 67649 |||||||||||| ||||||||||||| ||| || || || || |||||||| || || Sbjct 369 GAGTTGTTGAAACTAGCATACTGGAAGACCAATCGGCCAAAATAACCATGAGCGGCTACG 428 Query 67650 ATGTTGTAAGTCT-CTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTC 67708 || || ||||| | |||||||||| ||||| |||||||| | || | || | || Sbjct 429 ATATTATAAGTTTTCTTCTTCTTGACCGAATTTGTAACCTTCATTAGCAAATTCATTTTC 488 Query 67709 AGTAGTTTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGA 67768 | ||||| ||||| | | ||| || || | ||||| ||||||||| |||| || || Sbjct 489 TCTGGTTTC-CTGATTAAACTAGAGGTTACCAAGGAACCATGCATAGCATTAAATAGGGA 547 Query 67769 ACCACCGAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTC 67828 | ||| |||||| ||||| | ||||| || |||||||||||||| ||||||||||| Sbjct 548 GCTGACGAGTACACCAGCTACGCTTAGCATGTGAAATGGGTGCATAAGAATGTTGTGCTC 607 Query 67829 TGCTTGGAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGA 67888 | ||||| || | |||| |||| |||||||||||||| || |||||||| | ||||| Sbjct 608 AACCTGGAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGA 667 Query 67889 GAA 67891 || Sbjct 668 AAA 670 >seq10884 Length=5042 Score = 147 bits (162), Expect = 2e-30 Identities = 122/149 (82%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 67743 GAACCGTGCATAGCACTAAAGAGTGAACCACCGAATACACCTGCTACTCCAAGCATATGG 67802 ||||| || |||||| | || || || || ||||||||||| ||||| || ||||| || Sbjct 3937 GAACCATGTATAGCAATGAATAGGGAGCCGCCGAATACACCAGCTACGCCTAGCATGTGA 3878 Query 67803 AATGGGTGCATAAGGATGTTGTGCTCTGCTTGGAACACGAACATGTAGTTAAAAGTACCA 67862 |||||||||||||| ||||||||||| || ||||| || | |||| |||| ||||||||| Sbjct 3877 AATGGGTGCATAAGAATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCA 3818 Query 67863 GAAATACCAAGAGGCATTGCGTCAGAGAA 67891 ||||| || |||||||| | ||||| || Sbjct 3817 GAAATTCCTAGAGGCATACCATCAGAAAA 3789 >seq8631 Length=609 Score = 143 bits (158), Expect = 3e-29 Identities = 121/146 (83%), Gaps = 2/146 (1%) Strand=Plus/Plus Query 67735 TAACAAGAGAACCGTGCATAGCACTAAAG-AGTGAACCACCGAATACACCTGCTACTCCA 67793 || |||| ||||| ||||||||||| || || || || ||||||||||| ||||| | Sbjct 179 TACCAAG-GAACCATGCATAGCACTGAATTAGGGAGCCGCCGAATACACCAGCTACGTCT 237 Query 67794 AGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTGGAACACGAACATGTAGTTA 67853 ||||| || |||||||||||||| ||||||||||| || ||||| || | |||| |||| Sbjct 238 AGCATGTGAAATGGGTGCATAAGAATGTTGTGCTCGGCCTGGAATACAATCATGAAGTTG 297 Query 67854 AAAGTACCAGAAATACCAAGAGGCAT 67879 |||||||||||||| || |||||||| Sbjct 298 AAAGTACCAGAAATTCCTAGAGGCAT 323 Score = 82.4 bits (90), Expect = 9e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 67965 ATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGACCACAGTATGCTGTG 68024 |||||||| |||||| | |||||| || ||||||||||| |||||| ||| | Sbjct 343 ATCCAAGGGCGCATATCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAACAAGCT 402 Query 68025 ATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGGTCCACCATTATACAACCACTCA 68084 | || | | |||||| | || | |||| |||| |||||||| || ||||| ||| Sbjct 403 ACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCATTGTATAACCATTCA 462 Query 68085 TCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTG 68119 || | | |||||||||||| || || || || || Sbjct 463 TCAATGGATGCTGCTTCCCATATTGGGTAAAAATG 497 >seq254652 Length=6058 Score = 98.7 bits (108), Expect = 1e-15 Identities = 193/284 (68%), Gaps = 1/284 (0%) Strand=Plus/Minus Query 67944 GGAGCAGAGTATGCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCAC 68003 ||||| || ||||| ||| ||| |||| |||| ||| |||||| || |||||||||| Sbjct 944 GGAGCTGAATATGCAACAACAATCAAAGGTCGCACACCCAGACGGAAACTAAGTTCCCAC 885 Query 68004 TGACGACCACAGTATGCTGTGATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGGT 68063 | ||||| ||| | | || | | |||||| | || | |||| |||| Sbjct 884 TCGCGACCCATGTAACACGCTACACCAAGTAAGAAGTGTAGTACAATTAGTTCATAAGGA 825 Query 68064 CCACCATTATA-CAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAG 68122 |||||||| || ||||| ||||| | | || ||||||| | || | || || || | Sbjct 824 CCACCATTGTATAAACCATTCATCAACAAATGTTGCTTCCTATATTAGGTAAAAATGCAA 765 Query 68123 ACCGATTGCGTTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTACATGAG 68182 ||| | || | ||| |||||| |||| |||| ||||| || ||||| || || | || Sbjct 764 ACCTGTAGCTGTAGAAGTAGGAATAACAACACCTGAAATAATATTGTTTCCATAAAGTAG 705 Query 68183 CGAACCTGCAACAGGTTCTCTGATACCATCGATATCAACTGGAG 68226 || || |||||| |||||||| ||||| ||||| Sbjct 704 AGATGTAAAAATAGGTTCATGAATACCATCAATATCTTTTGGAG 661 >seq36621 Length=13842 Score = 95.1 bits (104), Expect = 1e-14 Identities = 212/314 (68%), Gaps = 11/314 (4%) Strand=Plus/Plus Query 67358 AGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAAG 67417 |||||| | ||| |||||| | || ||||| ||||| || |||||||| | ||| |||| Sbjct 7661 AGCAGCCAAGTCTAGAGGGGAATTATGAGCATTACGTTCATGCATAACATTCATAACAAG 7720 Query 67418 TCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTAC-CACCTGCG----TCA 67472 || |||| ||| || | |||||| ||| |||| | ||| | ||| Sbjct 7721 GTTAGCATGGTTACTGATATCACCTCAAGTAT---TCA--TTACACGGCTGTGACTATCA 7775 Query 67473 ACGACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATT 67532 || || ||||||| || |||| || |||||||| |||||| | ||||| Sbjct 7776 ACTACCAATTGGTTTCGATTTCAACCATTTAGGTTGAAAGCCATAATGCTAGTACCCAAC 7835 Query 67533 GCAGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTTGAG 67592 ||||||||||| || | | ||||| | ||||| || || || | | | ||| Sbjct 7836 GCAGTGAACCATATACCAAAAACAGGCCAAGCAGCTAGAAAAAAATATATAAAATGAGAG 7895 Query 67593 TTGTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATG 67652 | ||||||| ||||| | ||||||||| | | | || || ||||||||| || || Sbjct 7896 TCGTTGAAACTAGCATATTAGAAGATCAATC-AGCCAAATAACCATGAGCATATACGATA 7954 Query 67653 TTGTAAGTCTCTTC 67666 || ||||| ||||| Sbjct 7955 TTATAAGTTTCTTC 7968 >seq231965 Length=7494 Score = 91.5 bits (100), Expect = 2e-13 Identities = 109/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 67778 TACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTGGAA 67837 |||||| |||| || ||||| | |||||||||||||| ||||||||||| | | || Sbjct 6776 TACACCGTCTACGCCTAGCATGTAAAATGGGTGCATAAGAATGTTGTGCTCAACCTTAAA 6717 Query 67838 CACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAAGAACC 67897 || | |||| |||| ||||||||| |||| || ||||| || | | ||| || | Sbjct 6716 TACAATCATGAAGTTGAAAGTACCATAAATTCCTAGAGGAATACCATGAGAAAAGCTTCA 6657 Query 67898 TTGACCGAAAGGATAGACCAAGAACACA 67925 ||||| | || |||| |||||| ||| Sbjct 6656 TTGACAAATTGGGTAGATCAAGAAAACA 6629 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563659572402960