Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27]
463,906 sequences; 661,937,708 total letters
Query= NC_021071.1
Length=177211
Score E
Sequences producing significant alignments: (Bits) Value
seq107965 333 3e-86
seq250312 219 5e-52
seq169634 214 2e-50
seq300680 210 2e-49
seq10884 147 2e-30
seq8631 143 3e-29
seq254652 98.7 1e-15
seq36621 95.1 1e-14
seq231965 91.5 2e-13
>seq107965
Length=6474
Score = 333 bits (368), Expect = 3e-86
Identities = 426/587 (73%), Gaps = 0/587 (0%)
Strand=Plus/Minus
Query 67590 GAGTTGTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACA 67649
|||||||||||| ||||| ||||||||||| || || || || |||||| | || ||
Sbjct 6462 GAGTTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAACGGCTACG 6403
Query 67650 ATGTTGTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCA 67709
|| || ||||| || |||||| | || || ||||||| | || || | | ||
Sbjct 6402 ATATTATAAGTTTCATCTTCTAGACCAAATCTGTAACCTTCATTAGCAGATTTATTTTCT 6343
Query 67710 GTAGTTTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAA 67769
|| ||||| ||||| | | |||| || || | ||||| ||||||||||| || || ||
Sbjct 6342 GTGGTTTCCCTGATCAAACAAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAG 6283
Query 67770 CCACCGAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCT 67829
|| |||| |||||| ||||| || ||||| || |||||||||||||| |||||||||||
Sbjct 6282 CCGCCGATTACACCAGCTACACCTAGCATGTGAAATGGGTGCATAAGAATGTTGTGCTCA 6223
Query 67830 GCTTGGAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAG 67889
|| ||||| || | |||| |||| |||||||||||||| || |||||||| | |||||
Sbjct 6222 GCCTGGAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAA 6163
Query 67890 AAAGAACCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCA 67949
|| |||||||| | || |||| |||||| ||| | || || | || |||||
Sbjct 6162 AAGCTTCCTTGACCAATTGGGTAGATCAAGAAAACAACACTCGCAGCTGCAACAGGAGCT 6103
Query 67950 GAGTATGCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGA 68009
|| ||||| ||| ||||||| |||||||| ||||| || ||||||||||| ||||
Sbjct 6102 GAATATGCAACAACCATCCAAGTTCGCATACCCAGACGAAAACTAAGTTCCCACTCACGA 6043
Query 68010 CCACAGTATGCTGTGATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGGTCCACCA 68069
|| ||| | | || | | |||||| | || | |||| |||| ||||||
Sbjct 6042 CCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCA 5983
Query 68070 TTATACAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAGACCGATT 68129
|| || ||||| ||||| | || || ||||||||| || || || || || | ||| ||
Sbjct 5982 TTGTATAACCATTCATCAACAGATGTTGCTTCCCATATTGGGTAAAAATGCAAACCTATA 5923
Query 68130 GCGTTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTA 68176
|| ||| |||||| || | ||| |||| || ||||| || ||
Sbjct 5922 GCTGCAGAAATAGGAATAATGGTACCTAAAATAATATTGTTTCCATA 5876
>seq250312
Length=8481
Score = 219 bits (242), Expect = 5e-52
Identities = 325/462 (70%), Gaps = 9/462 (2%)
Strand=Plus/Minus
Query 67367 GTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAAGTCCTGCTCT 67426
||| |||||||| || ||||| |||| || | |||||||||||| ||||| || |
Sbjct 2026 GTCTAGAGGGAAATTATGAGCATTACATTCATACATAACTTCCATACCAAGGTTAGCACA 1967
Query 67427 GTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGCGTCAACGACGGATTGGTT 67486
||||| ||| || ||||||||| ||| || | || ||| || || ||||| |
Sbjct 1966 GTTAATGATATCAGCCCAAGTATTAATTACATGACATTGACTGTCGACTACAGATTGATG 1907
Query 67487 GAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTGCAGTGAACCAGAT 67546
||| | ||||| || |||||| | |||||||| | ||| | || | ||||||||
Sbjct 1906 GAAACTAAAACCATTTAGGTTGTAAGCCATAGTGCTGATACCTAACACAATAAACCAGAT 1847
Query 67547 GCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTTGAGTTGTTGAAAGATGC 67606
||| | | ||| |||||||| || | | | ||||||||||||| ||
Sbjct 1846 ---------AGGCCAAGTAGCTAGGAAGAAATGTAAAAAACGTGAGTTGTTGAAACTAGC 1796
Query 67607 ATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATGTTGTAAGTCTCTTC 67666
|| |||||||||| ||||| || || |||||||| || ||||| || ||| | ||| |
Sbjct 1795 ATGTCGGAAGATCAATCGACCAAAATAACCATGAGCGGCTACAATATTCTAATTTTCTCC 1736
Query 67667 TTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTAGTTTCTCTGATAAG 67726
|||||| ||||| | ||||| | || | | || | || || ||||| ||||| |
Sbjct 1735 TTCTTGACCGAATATATAACCTTCATTAGCTTATTCATTCTTTGTGGTTTCCCTGATCAA 1676
Query 67727 AGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCACCGAATACACCTGC 67786
| || || || | ||||| |||||||||| || || || | || | |||||| ||
Sbjct 1675 ACTAGGGGTTACCAAGGAACCACGCATAGCACTGAATAGGGAGCTGCCAATTACACCAGC 1616
Query 67787 TACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTC 67828
||| || ||||| || |||| |||| |||| |||||||||||
Sbjct 1615 TACGCCTAGCATGTGAAATGAGTGCCTAAGAATGTTGTGCTC 1574
>seq169634
Length=720
Score = 214 bits (236), Expect = 2e-50
Identities = 309/436 (71%), Gaps = 0/436 (0%)
Strand=Plus/Plus
Query 67869 CCAAGAGGCATTGCGTCAGAGAAAGAACCTTGACCGAAAGGATAGACCAAGAACACAGCG 67928
|| |||||||| | ||||| || |||||||| | || |||| |||||| |||||
Sbjct 2 CCTAGAGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCA 61
Query 67929 AATGCTGCAGACACTGGAGCAGAGTATGCTACACAGATCCAAGGACGCATACCAAGACGG 67988
||| || | || | ||| || ||||| ||| |||||||| |||||||| ||||||
Sbjct 62 GTTGCAGCTGCAACAGAAGCTGAATATGCAACAACAATCCAAGGTCGCATACCCAGACGG 121
Query 67989 TAAGAAAGTTCCCACTGACGACCACAGTATGCTGTGATTCCGATAAGGAAGTGGAAGACT 68048
|| ||||||||||| |||||| ||| | | || | | |||||| | ||
Sbjct 122 AAACTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACA 181
Query 68049 ACAAGTTGGAAAGGTCCACCATTATACAACCACTCATCTAGAGTTGCTGCTTCCCAGATA 68108
| |||| |||| |||||||| || ||||| ||||| | | |||||||||||| ||
Sbjct 182 ATTAGTTCATAAGGACCACCATTGTATAACCATTCATCAACGGATGCTGCTTCCCATATT 241
Query 68109 GGATAGAAGTGAAGACCGATTGCGTTTGAACTAGGAACAACAGCACCAGAAATGATGTTG 68168
|| || || || | ||| || || ||| |||||| || |||| ||||| || |||
Sbjct 242 GGGTAAAAATGCAAACCTATAGCTGCAGAAGTAGGAATAATGACACCTGAAATAATATTG 301
Query 68169 TTACCGTACATGAGCGAACCTGCAACAGGTTCTCTGATACCATCGATATCAACTGGAGGT 68228
|| || || | || || || ||||||||| | |||||||| ||||| ||||||||
Sbjct 302 TTTCCATAACTTAGAGATCCATAAACAGGTTCACGAATACCATCAATATCCACTGGAGGA 361
Query 68229 GCTGCAATGAATGCAATGATGAAGCAAGTTGCTGCTGCGAGCAAGCAAGGAATCATCAAC 68288
|| |||||||| || || || || || | ||| | | ||| ||| ||||||||
Sbjct 362 GCAGCAATGAAAGCGATAATAAATACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAA 421
Query 68289 ACACCGAACCAACCAA 68304
||||| ||||| ||||
Sbjct 422 ACACCAAACCATCCAA 437
>seq300680
Length=3790
Score = 210 bits (232), Expect = 2e-49
Identities = 230/303 (76%), Gaps = 2/303 (1%)
Strand=Plus/Plus
Query 67590 GAGTTGTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACA 67649
|||||||||||| ||||||||||||| ||| || || || || |||||||| || ||
Sbjct 369 GAGTTGTTGAAACTAGCATACTGGAAGACCAATCGGCCAAAATAACCATGAGCGGCTACG 428
Query 67650 ATGTTGTAAGTCT-CTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTC 67708
|| || ||||| | |||||||||| ||||| |||||||| | || | || | ||
Sbjct 429 ATATTATAAGTTTTCTTCTTCTTGACCGAATTTGTAACCTTCATTAGCAAATTCATTTTC 488
Query 67709 AGTAGTTTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGA 67768
| ||||| ||||| | | ||| || || | ||||| ||||||||| |||| || ||
Sbjct 489 TCTGGTTTC-CTGATTAAACTAGAGGTTACCAAGGAACCATGCATAGCATTAAATAGGGA 547
Query 67769 ACCACCGAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTC 67828
| ||| |||||| ||||| | ||||| || |||||||||||||| |||||||||||
Sbjct 548 GCTGACGAGTACACCAGCTACGCTTAGCATGTGAAATGGGTGCATAAGAATGTTGTGCTC 607
Query 67829 TGCTTGGAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGA 67888
| ||||| || | |||| |||| |||||||||||||| || |||||||| | |||||
Sbjct 608 AACCTGGAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGA 667
Query 67889 GAA 67891
||
Sbjct 668 AAA 670
>seq10884
Length=5042
Score = 147 bits (162), Expect = 2e-30
Identities = 122/149 (82%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 67743 GAACCGTGCATAGCACTAAAGAGTGAACCACCGAATACACCTGCTACTCCAAGCATATGG 67802
||||| || |||||| | || || || || ||||||||||| ||||| || ||||| ||
Sbjct 3937 GAACCATGTATAGCAATGAATAGGGAGCCGCCGAATACACCAGCTACGCCTAGCATGTGA 3878
Query 67803 AATGGGTGCATAAGGATGTTGTGCTCTGCTTGGAACACGAACATGTAGTTAAAAGTACCA 67862
|||||||||||||| ||||||||||| || ||||| || | |||| |||| |||||||||
Sbjct 3877 AATGGGTGCATAAGAATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCA 3818
Query 67863 GAAATACCAAGAGGCATTGCGTCAGAGAA 67891
||||| || |||||||| | ||||| ||
Sbjct 3817 GAAATTCCTAGAGGCATACCATCAGAAAA 3789
>seq8631
Length=609
Score = 143 bits (158), Expect = 3e-29
Identities = 121/146 (83%), Gaps = 2/146 (1%)
Strand=Plus/Plus
Query 67735 TAACAAGAGAACCGTGCATAGCACTAAAG-AGTGAACCACCGAATACACCTGCTACTCCA 67793
|| |||| ||||| ||||||||||| || || || || ||||||||||| ||||| |
Sbjct 179 TACCAAG-GAACCATGCATAGCACTGAATTAGGGAGCCGCCGAATACACCAGCTACGTCT 237
Query 67794 AGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTGGAACACGAACATGTAGTTA 67853
||||| || |||||||||||||| ||||||||||| || ||||| || | |||| ||||
Sbjct 238 AGCATGTGAAATGGGTGCATAAGAATGTTGTGCTCGGCCTGGAATACAATCATGAAGTTG 297
Query 67854 AAAGTACCAGAAATACCAAGAGGCAT 67879
|||||||||||||| || ||||||||
Sbjct 298 AAAGTACCAGAAATTCCTAGAGGCAT 323
Score = 82.4 bits (90), Expect = 9e-11
Identities = 111/155 (72%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 67965 ATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGACCACAGTATGCTGTG 68024
|||||||| |||||| | |||||| || ||||||||||| |||||| ||| |
Sbjct 343 ATCCAAGGGCGCATATCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAACAAGCT 402
Query 68025 ATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGGTCCACCATTATACAACCACTCA 68084
| || | | |||||| | || | |||| |||| |||||||| || ||||| |||
Sbjct 403 ACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCATTGTATAACCATTCA 462
Query 68085 TCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTG 68119
|| | | |||||||||||| || || || || ||
Sbjct 463 TCAATGGATGCTGCTTCCCATATTGGGTAAAAATG 497
>seq254652
Length=6058
Score = 98.7 bits (108), Expect = 1e-15
Identities = 193/284 (68%), Gaps = 1/284 (0%)
Strand=Plus/Minus
Query 67944 GGAGCAGAGTATGCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCAC 68003
||||| || ||||| ||| ||| |||| |||| ||| |||||| || ||||||||||
Sbjct 944 GGAGCTGAATATGCAACAACAATCAAAGGTCGCACACCCAGACGGAAACTAAGTTCCCAC 885
Query 68004 TGACGACCACAGTATGCTGTGATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGGT 68063
| ||||| ||| | | || | | |||||| | || | |||| ||||
Sbjct 884 TCGCGACCCATGTAACACGCTACACCAAGTAAGAAGTGTAGTACAATTAGTTCATAAGGA 825
Query 68064 CCACCATTATA-CAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAG 68122
|||||||| || ||||| ||||| | | || ||||||| | || | || || || |
Sbjct 824 CCACCATTGTATAAACCATTCATCAACAAATGTTGCTTCCTATATTAGGTAAAAATGCAA 765
Query 68123 ACCGATTGCGTTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTACATGAG 68182
||| | || | ||| |||||| |||| |||| ||||| || ||||| || || | ||
Sbjct 764 ACCTGTAGCTGTAGAAGTAGGAATAACAACACCTGAAATAATATTGTTTCCATAAAGTAG 705
Query 68183 CGAACCTGCAACAGGTTCTCTGATACCATCGATATCAACTGGAG 68226
|| || |||||| |||||||| ||||| |||||
Sbjct 704 AGATGTAAAAATAGGTTCATGAATACCATCAATATCTTTTGGAG 661
>seq36621
Length=13842
Score = 95.1 bits (104), Expect = 1e-14
Identities = 212/314 (68%), Gaps = 11/314 (4%)
Strand=Plus/Plus
Query 67358 AGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAAG 67417
|||||| | ||| |||||| | || ||||| ||||| || |||||||| | ||| ||||
Sbjct 7661 AGCAGCCAAGTCTAGAGGGGAATTATGAGCATTACGTTCATGCATAACATTCATAACAAG 7720
Query 67418 TCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTAC-CACCTGCG----TCA 67472
|| |||| ||| || | |||||| ||| |||| | ||| | |||
Sbjct 7721 GTTAGCATGGTTACTGATATCACCTCAAGTAT---TCA--TTACACGGCTGTGACTATCA 7775
Query 67473 ACGACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATT 67532
|| || ||||||| || |||| || |||||||| |||||| | |||||
Sbjct 7776 ACTACCAATTGGTTTCGATTTCAACCATTTAGGTTGAAAGCCATAATGCTAGTACCCAAC 7835
Query 67533 GCAGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTTGAG 67592
||||||||||| || | | ||||| | ||||| || || || | | | |||
Sbjct 7836 GCAGTGAACCATATACCAAAAACAGGCCAAGCAGCTAGAAAAAAATATATAAAATGAGAG 7895
Query 67593 TTGTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATG 67652
| ||||||| ||||| | ||||||||| | | | || || ||||||||| || ||
Sbjct 7896 TCGTTGAAACTAGCATATTAGAAGATCAATC-AGCCAAATAACCATGAGCATATACGATA 7954
Query 67653 TTGTAAGTCTCTTC 67666
|| ||||| |||||
Sbjct 7955 TTATAAGTTTCTTC 7968
>seq231965
Length=7494
Score = 91.5 bits (100), Expect = 2e-13
Identities = 109/148 (74%), Gaps = 0/148 (0%)
Strand=Plus/Minus
Query 67778 TACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTGGAA 67837
|||||| |||| || ||||| | |||||||||||||| ||||||||||| | | ||
Sbjct 6776 TACACCGTCTACGCCTAGCATGTAAAATGGGTGCATAAGAATGTTGTGCTCAACCTTAAA 6717
Query 67838 CACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAAGAACC 67897
|| | |||| |||| ||||||||| |||| || ||||| || | | ||| || |
Sbjct 6716 TACAATCATGAAGTTGAAAGTACCATAAATTCCTAGAGGAATACCATGAGAAAAGCTTCA 6657
Query 67898 TTGACCGAAAGGATAGACCAAGAACACA 67925
||||| | || |||| |||||| |||
Sbjct 6656 TTGACAAATTGGGTAGATCAAGAAAACA 6629
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 563659572402960
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