Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27]
463,906 sequences; 661,937,708 total letters
Query= NC_021246.1
Length=281182
Score E
Sequences producing significant alignments: (Bits) Value
seq25275 102 1e-16
seq156932 87.8 3e-12
seq284040 84.2 4e-11
>seq25275
Length=8276
Score = 102 bits (112), Expect = 1e-16
Identities = 161/231 (70%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190
|| ||||| |||||||| ||||||| ||||| || | || || ||||||||||||
Sbjct 5932 ATCCCACCCCTCAATCGGAGTACCAAATGCAGAGTCGATTCCTTCTGGATATTATAGTCG 5873
Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250
| | ||| | ||| || | || || || ||||| || | ||||| || || ||
Sbjct 5872 GCAAGCGTACGGCCATCCTCAAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCTGGT 5813
Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310
|| || || || ||||| || || || | ||| | || ||| || |||||| |||
Sbjct 5812 GGGATACCCTCCTTATCCTGGATCTTCGCTTTAACGTTGTCAATGGTGTCGGAACTCTCG 5753
Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361
||||| | || ||||| || || |||| || || ||||| || ||||||
Sbjct 5752 ACTTCCAATGTGATAGTCTTCCCGGTTAAGGTCTTCACAAAGATCTGCATT 5702
Score = 100 bits (110), Expect = 5e-16
Identities = 160/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190
|| ||||||||||||||||| |||| || | || | || || ||| || |||||
Sbjct 5476 ATCCCACCTCTCAATCGAAGCACCAAGTGAAGGGTTGATTCCTTCTGAATGTTGTAGTCT 5417
Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250
| | || | ||| || | || || |||||||| || ||||| ||||| || ||
Sbjct 5416 GCAAGGGTACGGCCATCCTCAAGCTGCTTGCCGGCAAAGATCAATCTTTGTTGGTCTGGT 5357
Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310
|| ||||| ||||||||||| ||||| | || | || || || ||||| ||||
Sbjct 5356 GGGATTCCCTCTTTATCTTGGATTTTCGCCTTCACGTTGTCGATGGTGTCGGAGCTCTCA 5297
Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
||||| || || || || || || || | || || ||||| || |||||
Sbjct 5296 ACTTCCAGTGTGATGGTCTTTCCGGTCAAAGTCTTCACAAAGATCTGCAT 5247
Score = 93.3 bits (102), Expect = 8e-14
Identities = 162/236 (69%), Gaps = 0/236 (0%)
Strand=Plus/Minus
Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184
|||| ||||| ||||| || ||||| |||| || | || | ||| || || |||
Sbjct 5026 ATTTGCATACCGCCTCTTAAACGAAGAACCAAGTGAAGGGTTGACTCCTTCTGGATGTTA 4967
Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244
||||||| | || | || || | || ||||||||||| || | |||||| ||
Sbjct 4966 TAGTCGGCAAGAGTACGGCCGTCCTCGAGCTGCTTTCCGGCAAAGATCAGTCTCTGCTGG 4907
Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304
|| || || || ||||| || ||||| ||||| | || | || ||| || || ||
Sbjct 4906 TCTGGGGGAATACCTTCCTTGTCTTGAATTTTAGCCTTCACGTTGTCAATGGTGTCAGAG 4847
Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|| || || || || || ||||| || || || ||||| ||||| ||||||||
Sbjct 4846 CTTTCGACCTCCAGCGTGATGGTTTTGCCGGTGAGGGTTTTGACAAAGATTTGCAT 4791
Score = 86.0 bits (94), Expect = 1e-11
Identities = 157/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190
|| ||||||||||||||||| |||| ||| | || | || || ||| || |||||
Sbjct 5704 ATTCCACCTCTCAATCGAAGAACCAAATGAAGGGTCGATTCCTTCTGAATGTTGTAGTCA 5645
Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250
| | ||| | | ||| || | || || || ||||| || | ||||| || || ||
Sbjct 5644 GCAAGCGTACGACCATCCTCGAGCTGCTTACCCGCAAAGATCAGCCTCTGCTGGTCTGGT 5585
Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310
|| || || || |||||||| || || | || | || || || ||||| ||||
Sbjct 5584 GGGATACCCTCCTTATCTTGAATCTTAGCCTTCACGTTGTCGATGGTGTCGGAGCTCTCA 5525
Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|| || ||||| || || || || || | || || ||||| || |||||
Sbjct 5524 ACCTCGAGAGTGATGGTCTTTCCGGTCAATGTCTTCACAAAGATCTGCAT 5475
>seq156932
Length=6713
Score = 87.8 bits (96), Expect = 3e-12
Identities = 107/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274
|||||||||||||| || | ||| ||||| || || || |||||||| || ||||| ||
Sbjct 3838 TGTTTTCCGGCAAAGATGAGTCTTTGTTGGTCTGGTGGGATTCCTTCCTTGTCTTGAATC 3897
Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334
|||| ||| | || || ||||| || ||| ||||| | ||| || || || ||
Sbjct 3898 TTGGCTTTCACGTTGTCGATGGTATCCGAGCTCTCGACTTCCAAAGTGATCGTCTTCCCA 3957
Query 193335 GTTAGCGTTTTTACAAATATTTGCAT 193360
|| || ||||| || || || |||||
Sbjct 3958 GTGAGGGTTTTGACGAAAATCTGCAT 3983
>seq284040
Length=2693
Score = 84.2 bits (92), Expect = 4e-11
Identities = 106/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274
|| ||||||||||| || || ||||| || || || || || || |||||||| || ||
Sbjct 1132 TGCTTTCCGGCAAATATCAACCTCTGCTGGTCCGGTGGAATCCCCTCTTTATCCTGAATC 1073
Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334
|||| || | ||| || |||||||| ||| || || ||||| || || || ||
Sbjct 1072 TTGGCCTTGACATTATCGATCGTATCGGAGCTCTCCACCTCCAGAGTAATCGTCTTCCCG 1013
Query 193335 GTTAGCGTTTTTACAAATATTTGCAT 193360
|| | ||| || || ||||| |||||
Sbjct 1012 GTCAACGTCTTCACGAATATCTGCAT 987
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 894437461573920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |