Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq25275 102 1e-16 seq156932 87.8 3e-12 seq284040 84.2 4e-11 >seq25275 Length=8276 Score = 102 bits (112), Expect = 1e-16 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || ||||| |||||||| ||||||| ||||| || | || || |||||||||||| Sbjct 5932 ATCCCACCCCTCAATCGGAGTACCAAATGCAGAGTCGATTCCTTCTGGATATTATAGTCG 5873 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | ||| | ||| || | || || || ||||| || | ||||| || || || Sbjct 5872 GCAAGCGTACGGCCATCCTCAAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCTGGT 5813 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || || || ||||| || || || | ||| | || ||| || |||||| ||| Sbjct 5812 GGGATACCCTCCTTATCCTGGATCTTCGCTTTAACGTTGTCAATGGTGTCGGAACTCTCG 5753 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 ||||| | || ||||| || || |||| || || ||||| || |||||| Sbjct 5752 ACTTCCAATGTGATAGTCTTCCCGGTTAAGGTCTTCACAAAGATCTGCATT 5702 Score = 100 bits (110), Expect = 5e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || ||||||||||||||||| |||| || | || | || || ||| || ||||| Sbjct 5476 ATCCCACCTCTCAATCGAAGCACCAAGTGAAGGGTTGATTCCTTCTGAATGTTGTAGTCT 5417 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || | ||| || | || || |||||||| || ||||| ||||| || || Sbjct 5416 GCAAGGGTACGGCCATCCTCAAGCTGCTTGCCGGCAAAGATCAATCTTTGTTGGTCTGGT 5357 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || ||||| ||||||||||| ||||| | || | || || || ||||| |||| Sbjct 5356 GGGATTCCCTCTTTATCTTGGATTTTCGCCTTCACGTTGTCGATGGTGTCGGAGCTCTCA 5297 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || || || || || || || | || || ||||| || ||||| Sbjct 5296 ACTTCCAGTGTGATGGTCTTTCCGGTCAAAGTCTTCACAAAGATCTGCAT 5247 Score = 93.3 bits (102), Expect = 8e-14 Identities = 162/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| ||||| ||||| || ||||| |||| || | || | ||| || || ||| Sbjct 5026 ATTTGCATACCGCCTCTTAAACGAAGAACCAAGTGAAGGGTTGACTCCTTCTGGATGTTA 4967 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||||| | || | || || | || ||||||||||| || | |||||| || Sbjct 4966 TAGTCGGCAAGAGTACGGCCGTCCTCGAGCTGCTTTCCGGCAAAGATCAGTCTCTGCTGG 4907 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || ||||| || ||||| ||||| | || | || ||| || || || Sbjct 4906 TCTGGGGGAATACCTTCCTTGTCTTGAATTTTAGCCTTCACGTTGTCAATGGTGTCAGAG 4847 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || || ||||| || || || ||||| ||||| |||||||| Sbjct 4846 CTTTCGACCTCCAGCGTGATGGTTTTGCCGGTGAGGGTTTTGACAAAGATTTGCAT 4791 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || ||||||||||||||||| |||| ||| | || | || || ||| || ||||| Sbjct 5704 ATTCCACCTCTCAATCGAAGAACCAAATGAAGGGTCGATTCCTTCTGAATGTTGTAGTCA 5645 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | ||| | | ||| || | || || || ||||| || | ||||| || || || Sbjct 5644 GCAAGCGTACGACCATCCTCGAGCTGCTTACCCGCAAAGATCAGCCTCTGCTGGTCTGGT 5585 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || || || |||||||| || || | || | || || || ||||| |||| Sbjct 5584 GGGATACCCTCCTTATCTTGAATCTTAGCCTTCACGTTGTCGATGGTGTCGGAGCTCTCA 5525 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || ||||| || || || || || | || || ||||| || ||||| Sbjct 5524 ACCTCGAGAGTGATGGTCTTTCCGGTCAATGTCTTCACAAAGATCTGCAT 5475 >seq156932 Length=6713 Score = 87.8 bits (96), Expect = 3e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 |||||||||||||| || | ||| ||||| || || || |||||||| || ||||| || Sbjct 3838 TGTTTTCCGGCAAAGATGAGTCTTTGTTGGTCTGGTGGGATTCCTTCCTTGTCTTGAATC 3897 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 |||| ||| | || || ||||| || ||| ||||| | ||| || || || || Sbjct 3898 TTGGCTTTCACGTTGTCGATGGTATCCGAGCTCTCGACTTCCAAAGTGATCGTCTTCCCA 3957 Query 193335 GTTAGCGTTTTTACAAATATTTGCAT 193360 || || ||||| || || || ||||| Sbjct 3958 GTGAGGGTTTTGACGAAAATCTGCAT 3983 >seq284040 Length=2693 Score = 84.2 bits (92), Expect = 4e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 || ||||||||||| || || ||||| || || || || || || |||||||| || || Sbjct 1132 TGCTTTCCGGCAAATATCAACCTCTGCTGGTCCGGTGGAATCCCCTCTTTATCCTGAATC 1073 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 |||| || | ||| || |||||||| ||| || || ||||| || || || || Sbjct 1072 TTGGCCTTGACATTATCGATCGTATCGGAGCTCTCCACCTCCAGAGTAATCGTCTTCCCG 1013 Query 193335 GTTAGCGTTTTTACAAATATTTGCAT 193360 || | ||| || || ||||| ||||| Sbjct 1012 GTCAACGTCTTCACGAATATCTGCAT 987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 894437461573920