Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq25275 114 2e-20 seq228143 111 2e-19 >seq25275 Length=8276 Score = 114 bits (126), Expect = 2e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | ||||| | || || ||||| || || | || |||||| ||| Sbjct 4791 ATGCAAATCTTTGTCAAAACCCTCACCGGCAAAACCATCACGCTGGAGGTCGAAAGCTCT 4850 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| |||||||| |||||| ||||| || ||||| || || ||||| || Sbjct 4851 GACACCATTGACAACGTGAAGGCTAAAATTCAAGACAAGGAAGGTATTCCCCCAGACCAG 4910 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||| |||| | |||||| ||||||||||| || | | ||| | | || ||||| Sbjct 4911 CAGAGACTGATCTTTGCCGGAAAGCAGCTCGAGGACGGCCGTACTCTTGCCGACTATAAC 4970 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || || ||| | || ||||| || || | | |||||||||||| Sbjct 4971 ATCCAGAAGGAGTCAACCCTTCACTTGGTTCTTCGTTTAAGAGGCGGT 5018 Score = 109 bits (120), Expect = 8e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | ||||| | || || ||||| || || || |||||||| || Sbjct 5019 ATGCAAATCTTTGTCAAAACCCTAACAGGGAAAACCATCACGTTGGAAGTCGAGAGCTCG 5078 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| |||||||| ||||| ||||| || || || || || ||||| || Sbjct 5079 GACACTATCGATAACGTGAAGGCGAAAATCCAAGACAAGGAGGGTATTCCCCCAGACCAG 5138 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||| | |||||| ||||||||||| || | ||||| | ||||| || Sbjct 5139 CAGAGGTTGATCTTTGCCGGCAAGCAGCTCGAGGACGGTCGCACTTTGGCCGATTACAAC 5198 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 ||| || ||| | || ||||| || || | | |||||||||||| Sbjct 5199 ATACAGAAGGAGTCCACCCTTCACTTGGTTCTTCGTTTAAGAGGCGGT 5246 Score = 107 bits (118), Expect = 3e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || ||||| ||||| || || ||| | ||||| || || Sbjct 5247 ATGCAGATCTTTGTGAAGACTTTGACCGGAAAGACCATCACACTGGAAGTTGAGAGCTCC 5306 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || |||||||| ||||| ||||||||||| || || || ||||| ||| Sbjct 5307 GACACCATCGACAACGTGAAGGCGAAAATCCAAGATAAAGAGGGAATCCCACCAGACCAA 5366 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||| | |||||| |||||||| || ||| | | || | |||| || || Sbjct 5367 CAAAGATTGATCTTTGCCGGCAAGCAGCTTGAGGATGGCCGTACCCTTGCAGACTACAAC 5426 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 || || || | || ||||| || ||| | |||| ||||| || Sbjct 5427 ATTCAGAAGGAATCAACCCTTCACTTGGTGCTTCGATTGAGAGGTGG 5473 Score = 95.1 bits (104), Expect = 2e-14 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || |||| ||| | |||||||| || || || |||| ||||| ||| Sbjct 4563 ATGCAGATCTTCGTTAAGACACTAACTGGAAAGACCATCACCCTAGAGGTCGAGAGTTCC 4622 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || ||||| || ||||| || || || ||||| || || ||||| || Sbjct 4623 GATACAATCGACAACGTCAAGGCCAAAATCCAGGACAAGGAAGGGATTCCCCCAGATCAG 4682 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||| |||| | |||||| ||||||||||| || | ||||||| | || || ||| Sbjct 4683 CAAAGGCTGATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGAACTTTGGCCGACTACAAT 4742 Query 156003 AT 156004 || Sbjct 4743 AT 4744 >seq228143 Length=6931 Score = 111 bits (122), Expect = 2e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | ||||| ||||| ||||| || || ||||||||||| ||| || Sbjct 2641 ATGCAGATTTTTGTGAAAACCTTGACCGGAAAGACCATCACATTAGAAGTTGAAAGCTCC 2700 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||||| || || || ||||| ||||||||||| |||||||| || Sbjct 2701 GACACCATTGACAACGTCAAGGCCAAGATCCAAGACAAAGAAGGCATCCCTCCAGACCAG 2760 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||| | |||| ||||| |||||||| ||||| | |||| | | || || || Sbjct 2761 CAGAGACTTATTTTCGCCGGAAAGCAGCTGGAAGACGGCCGAACCCTTGCCGACTACAAC 2820 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || || ||| |||| ||||| || || Sbjct 2821 ATCCAGAAGGAGTCGACCCTTCACTTGGT 2849 Score = 95.1 bits (104), Expect = 2e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| |||| || ||||||||||| || || || || || ||||| ||| Sbjct 3097 ATGCAGATTTTTGTTAAGACGTTGACTGGAAAGACCATCACTTTGGAGGTCGAGAGTTCG 3156 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || ||||| ||| || || ||||| |||||||| || || || || Sbjct 3157 GACACCATTGACAATGTGAAGGCTAAGATCCAGGATAAGGAAGGCATCCCACCGGACCAG 3216 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||| | ||| || ||||| | |||||| | || || | ||||| || Sbjct 3217 CAGAGGTTGATCTTTGCTGGGAAGCAATTGGAAGATGGGCGTACGTTGGCTGATTACAAC 3276 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTG 156032 || || ||| |||| |||||| | ||| Sbjct 3277 ATCCAGAAGGAGTCGACCCTTCATCTTGTG 3306 Score = 86.0 bits (94), Expect = 9e-12 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| |||| || | |||||||| || || || | || || || ||| Sbjct 2185 ATGCAGATCTTTGTTAAGACCCTCACTGGAAAGACAATCACTCTCGAGGTTGAGAGTTCC 2244 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || ||||| || || || ||||| || |||||||| || ||||| || Sbjct 2245 GACACAATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCCCCAGACCAG 2304 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||| | || | |||||| ||||||||||||||| | | |||||| | || || || Sbjct 2305 CAAAGGCTCATCTTTGCCGGAAAGCAGCTCGAAGATGGCCGTACTTTAGCCGACTACAAC 2364 Query 156003 AT 156004 || Sbjct 2365 AT 2366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 727628002349600