Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27]
463,906 sequences; 661,937,708 total letters
Query= NC_021247.1
Length=228750
Score E
Sequences producing significant alignments: (Bits) Value
seq25275 114 2e-20
seq228143 111 2e-19
>seq25275
Length=8276
Score = 114 bits (126), Expect = 2e-20
Identities = 162/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
|||||||| ||| | ||||| | || || ||||| || || | || |||||| |||
Sbjct 4791 ATGCAAATCTTTGTCAAAACCCTCACCGGCAAAACCATCACGCTGGAGGTCGAAAGCTCT 4850
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | ||| |||||||| |||||| ||||| || ||||| || || ||||| ||
Sbjct 4851 GACACCATTGACAACGTGAAGGCTAAAATTCAAGACAAGGAAGGTATTCCCCCAGACCAG 4910
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|| ||| |||| | |||||| ||||||||||| || | | ||| | | || |||||
Sbjct 4911 CAGAGACTGATCTTTGCCGGAAAGCAGCTCGAGGACGGCCGTACTCTTGCCGACTATAAC 4970
Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050
|| || ||| | || ||||| || || | | ||||||||||||
Sbjct 4971 ATCCAGAAGGAGTCAACCCTTCACTTGGTTCTTCGTTTAAGAGGCGGT 5018
Score = 109 bits (120), Expect = 8e-19
Identities = 161/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
|||||||| ||| | ||||| | || || ||||| || || || |||||||| ||
Sbjct 5019 ATGCAAATCTTTGTCAAAACCCTAACAGGGAAAACCATCACGTTGGAAGTCGAGAGCTCG 5078
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | ||| |||||||| ||||| ||||| || || || || || ||||| ||
Sbjct 5079 GACACTATCGATAACGTGAAGGCGAAAATCCAAGACAAGGAGGGTATTCCCCCAGACCAG 5138
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|| || ||||| | |||||| ||||||||||| || | ||||| | ||||| ||
Sbjct 5139 CAGAGGTTGATCTTTGCCGGCAAGCAGCTCGAGGACGGTCGCACTTTGGCCGATTACAAC 5198
Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050
||| || ||| | || ||||| || || | | ||||||||||||
Sbjct 5199 ATACAGAAGGAGTCCACCCTTCACTTGGTTCTTCGTTTAAGAGGCGGT 5246
Score = 107 bits (118), Expect = 3e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| || ||| | || || ||||| ||||| || || ||| | ||||| || ||
Sbjct 5247 ATGCAGATCTTTGTGAAGACTTTGACCGGAAAGACCATCACACTGGAAGTTGAGAGCTCC 5306
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | || |||||||| ||||| ||||||||||| || || || ||||| |||
Sbjct 5307 GACACCATCGACAACGTGAAGGCGAAAATCCAAGATAAAGAGGGAATCCCACCAGACCAA 5366
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
||||||||||| | |||||| |||||||| || ||| | | || | |||| || ||
Sbjct 5367 CAAAGATTGATCTTTGCCGGCAAGCAGCTTGAGGATGGCCGTACCCTTGCAGACTACAAC 5426
Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049
|| || || | || ||||| || ||| | |||| ||||| ||
Sbjct 5427 ATTCAGAAGGAATCAACCCTTCACTTGGTGCTTCGATTGAGAGGTGG 5473
Score = 95.1 bits (104), Expect = 2e-14
Identities = 130/182 (71%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| || || |||| ||| | |||||||| || || || |||| ||||| |||
Sbjct 4563 ATGCAGATCTTCGTTAAGACACTAACTGGAAAGACCATCACCCTAGAGGTCGAGAGTTCC 4622
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|||| || ||||| || ||||| || || || ||||| || || ||||| ||
Sbjct 4623 GATACAATCGACAACGTCAAGGCCAAAATCCAGGACAAGGAAGGGATTCCCCCAGATCAG 4682
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
||||| |||| | |||||| ||||||||||| || | ||||||| | || || |||
Sbjct 4683 CAAAGGCTGATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGAACTTTGGCCGACTACAAT 4742
Query 156003 AT 156004
||
Sbjct 4743 AT 4744
>seq228143
Length=6931
Score = 111 bits (122), Expect = 2e-19
Identities = 150/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| || ||| | ||||| ||||| ||||| || || ||||||||||| ||| ||
Sbjct 2641 ATGCAGATTTTTGTGAAAACCTTGACCGGAAAGACCATCACATTAGAAGTTGAAAGCTCC 2700
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | ||| ||||| || || || ||||| ||||||||||| |||||||| ||
Sbjct 2701 GACACCATTGACAACGTCAAGGCCAAGATCCAAGACAAAGAAGGCATCCCTCCAGACCAG 2760
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|| ||| | |||| ||||| |||||||| ||||| | |||| | | || || ||
Sbjct 2761 CAGAGACTTATTTTCGCCGGAAAGCAGCTGGAAGACGGCCGAACCCTTGCCGACTACAAC 2820
Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031
|| || ||| |||| ||||| || ||
Sbjct 2821 ATCCAGAAGGAGTCGACCCTTCACTTGGT 2849
Score = 95.1 bits (104), Expect = 2e-14
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| || ||| |||| || ||||||||||| || || || || || ||||| |||
Sbjct 3097 ATGCAGATTTTTGTTAAGACGTTGACTGGAAAGACCATCACTTTGGAGGTCGAGAGTTCG 3156
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | ||| || ||||| ||| || || ||||| |||||||| || || || ||
Sbjct 3157 GACACCATTGACAATGTGAAGGCTAAGATCCAGGATAAGGAAGGCATCCCACCGGACCAG 3216
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|| || ||||| | ||| || ||||| | |||||| | || || | ||||| ||
Sbjct 3217 CAGAGGTTGATCTTTGCTGGGAAGCAATTGGAAGATGGGCGTACGTTGGCTGATTACAAC 3276
Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTG 156032
|| || ||| |||| |||||| | |||
Sbjct 3277 ATCCAGAAGGAGTCGACCCTTCATCTTGTG 3306
Score = 86.0 bits (94), Expect = 9e-12
Identities = 128/182 (70%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| || ||| |||| || | |||||||| || || || | || || || |||
Sbjct 2185 ATGCAGATCTTTGTTAAGACCCTCACTGGAAAGACAATCACTCTCGAGGTTGAGAGTTCC 2244
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | || ||||| || || || ||||| || |||||||| || ||||| ||
Sbjct 2245 GACACAATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCCCCAGACCAG 2304
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
||||| | || | |||||| ||||||||||||||| | | |||||| | || || ||
Sbjct 2305 CAAAGGCTCATCTTTGCCGGAAAGCAGCTCGAAGATGGCCGTACTTTAGCCGACTACAAC 2364
Query 156003 AT 156004
||
Sbjct 2365 AT 2366
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 727628002349600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |