Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27]
463,906 sequences; 661,937,708 total letters
Query= NC_021248.1
Length=307691
Score E
Sequences producing significant alignments: (Bits) Value
seq228143 122 2e-22
seq276382 89.7 1e-12
>seq228143
Length=6931
Score = 122 bits (134), Expect = 2e-22
Identities = 165/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
|||||||| | |||||| | || | ||| | || | ||| || ||| || || |||
Sbjct 3098 ATACCACCACGAAGACGGAGGACCAGATGGAGGGTCGACTCCTTCTGGATGTTGTAGTCA 3039
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
| | ||||| |||| |||| ||||| ||||||||||| || |||||||| || |||
Sbjct 3038 GCAAGGGTTCGGCCATCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGTTGGTCTGGT 2979
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| || ||||| |||||||| || ||| ||| |||||| || | ||||| ||
Sbjct 2978 GGGATGCCTTCCTTATCTTGGATCTTAGCTTTCACATTATCAATGGTGTCTGAACTCTCA 2919
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
|| || | ||| ||||| || || || || || |||| || ||||||||
Sbjct 2918 ACCTCCAAAGTGATGGTCTTTCCGGTCAAGGTCTTAACGAAAATCTGCAT 2869
Score = 113 bits (124), Expect = 9e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369
||||| | ||||| | || | ||| | |||| |||||| || ||||||||||
Sbjct 3551 CCACCACGGAGACGAAGCACAAGATGCAGGGTAGACTCTTTCTGAATGTTATAATCAGCA 3492
Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429
| ||| | |||| ||||| || || || |||||||| || ||||| ||||| |||||
Sbjct 3491 AGTGTCCTCCCATCTTCCAACTGCTTCCCTGCAAAGATCAACCTCTGCTGATCCGGTGGG 3432
Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489
|| || || || ||||| || || || |||||| || | ||| || ||| ||
Sbjct 3431 ATCCCCTCCTTGTCTTGGATCTTTGCCTTCACATTATCAATCGTATCCGAGCTTTCCACC 3372
Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
|| ||||| || || || ||||| || || |||| |||||||||||
Sbjct 3371 TCCAGAGTGATCGTCTTTCCAGTCAACGTCTTAACGAATATCTGCAT 3325
Score = 105 bits (116), Expect = 1e-17
Identities = 133/183 (73%), Gaps = 0/183 (0%)
Strand=Plus/Minus
Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413
||| || ||||||| || || || |||| |||||||| || ||||||||||| || ||
Sbjct 3279 GATGTTGTAATCAGCCAACGTACGCCCATCTTCCAATTGCTTCCCAGCAAAGATCAACCT 3220
Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473
||| || || ||||| || ||||| ||||| || || ||| || ||||| || |
Sbjct 3219 CTGCTGGTCCGGTGGGATGCCTTCCTTATCCTGGATCTTAGCCTTCACATTGTCAATGGT 3160
Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533
|| || || || || | ||| ||||| || ||||| || || |||| ||| |||||
Sbjct 3159 GTCCGAACTCTCGACCTCCAAAGTGATGGTCTTTCCAGTCAACGTCTTAACAAAAATCTG 3100
Query 192534 CAT 192536
|||
Sbjct 3099 CAT 3097
>seq276382
Length=2823
Score = 89.7 bits (98), Expect = 1e-12
Identities = 129/182 (71%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414
|| |||||||||| | | | | |||| ||||| || || | ||| ||| | |||
Sbjct 2330 ATGTTATAATCAGCAAGTATCCTCCCATCTTCCAACTGCTTCCGTACAACGATCACCCTC 2271
Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474
|||||||| |||| || || || |||||||| || ||| || |||||| || | |
Sbjct 2270 TGTTGATCCAGTGGGATCCCCTCCTTATCTTGGATCTTAGCCTTCACATTATCAATCGTA 2211
Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534
|| || ||| || || ||||| || || || ||||| || || |||| |||||||||
Sbjct 2210 TCCGAGCTTTCCACCTCCAGAGTGATCGTCTTTCCAGTCAACGTCTTAACGAATATCTGC 2151
Query 192535 AT 192536
||
Sbjct 2150 AT 2149
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 978628452083100
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |