Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq228143 122 2e-22 seq276382 89.7 1e-12 >seq228143 Length=6931 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | |||||| | || | ||| | || | ||| || ||| || || ||| Sbjct 3098 ATACCACCACGAAGACGGAGGACCAGATGGAGGGTCGACTCCTTCTGGATGTTGTAGTCA 3039 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | ||||| |||| |||| ||||| ||||||||||| || |||||||| || ||| Sbjct 3038 GCAAGGGTTCGGCCATCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGTTGGTCTGGT 2979 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| |||||||| || ||| ||| |||||| || | ||||| || Sbjct 2978 GGGATGCCTTCCTTATCTTGGATCTTAGCTTTCACATTATCAATGGTGTCTGAACTCTCA 2919 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || | ||| ||||| || || || || || |||| || |||||||| Sbjct 2918 ACCTCCAAAGTGATGGTCTTTCCGGTCAAGGTCTTAACGAAAATCTGCAT 2869 Score = 113 bits (124), Expect = 9e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 ||||| | ||||| | || | ||| | |||| |||||| || |||||||||| Sbjct 3551 CCACCACGGAGACGAAGCACAAGATGCAGGGTAGACTCTTTCTGAATGTTATAATCAGCA 3492 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | ||| | |||| ||||| || || || |||||||| || ||||| ||||| ||||| Sbjct 3491 AGTGTCCTCCCATCTTCCAACTGCTTCCCTGCAAAGATCAACCTCTGCTGATCCGGTGGG 3432 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 || || || || ||||| || || || |||||| || | ||| || ||| || Sbjct 3431 ATCCCCTCCTTGTCTTGGATCTTTGCCTTCACATTATCAATCGTATCCGAGCTTTCCACC 3372 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || ||||| || || || ||||| || || |||| ||||||||||| Sbjct 3371 TCCAGAGTGATCGTCTTTCCAGTCAACGTCTTAACGAATATCTGCAT 3325 Score = 105 bits (116), Expect = 1e-17 Identities = 133/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||| || ||||||| || || || |||| |||||||| || ||||||||||| || || Sbjct 3279 GATGTTGTAATCAGCCAACGTACGCCCATCTTCCAATTGCTTCCCAGCAAAGATCAACCT 3220 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 ||| || || ||||| || ||||| ||||| || || ||| || ||||| || | Sbjct 3219 CTGCTGGTCCGGTGGGATGCCTTCCTTATCCTGGATCTTAGCCTTCACATTGTCAATGGT 3160 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 || || || || || | ||| ||||| || ||||| || || |||| ||| ||||| Sbjct 3159 GTCCGAACTCTCGACCTCCAAAGTGATGGTCTTTCCAGTCAACGTCTTAACAAAAATCTG 3100 Query 192534 CAT 192536 ||| Sbjct 3099 CAT 3097 >seq276382 Length=2823 Score = 89.7 bits (98), Expect = 1e-12 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 || |||||||||| | | | | |||| ||||| || || | ||| ||| | ||| Sbjct 2330 ATGTTATAATCAGCAAGTATCCTCCCATCTTCCAACTGCTTCCGTACAACGATCACCCTC 2271 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 |||||||| |||| || || || |||||||| || ||| || |||||| || | | Sbjct 2270 TGTTGATCCAGTGGGATCCCCTCCTTATCTTGGATCTTAGCCTTCACATTATCAATCGTA 2211 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 || || ||| || || ||||| || || || ||||| || || |||| ||||||||| Sbjct 2210 TCCGAGCTTTCCACCTCCAGAGTGATCGTCTTTCCAGTCAACGTCTTAACGAATATCTGC 2151 Query 192535 AT 192536 || Sbjct 2150 AT 2149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 978628452083100