Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq228143 109 1e-18 seq284040 86.0 1e-11 >seq228143 Length=6931 Score = 109 bits (120), Expect = 1e-18 Identities = 117/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || |||| ||||| |||||||| || || ||||||||||| ||||| || ||||| ||| Sbjct 3023 TCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGTTGGTCTGGTGGGATGCCTTCCTTA 2964 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 ||||| || ||| ||| |||||| || || ||||| || || || | ||| ||| Sbjct 2963 TCTTGGATCTTAGCTTTCACATTATCAATGGTGTCTGAACTCTCAACCTCCAAAGTGATG 2904 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || || || || |||| ||| |||||||| Sbjct 2903 GTCTTTCCGGTCAAGGTCTTAACGAAAATCTGCAT 2869 Score = 95.1 bits (104), Expect = 2e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 171873 GTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCA 171932 |||| |||||| ||| |||||||| | | | | | || ||||| || || || Sbjct 3521 GTAGACTCTTTCTGAATGTTATAATCAGCAAGTGTCCTCCCATCTTCCAACTGCTTCCCT 3462 Query 171933 GCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTT 171992 ||||| || || ||||| || || ||||| || || || || ||||| || || || Sbjct 3461 GCAAAGATCAACCTCTGCTGATCCGGTGGGATCCCCTCCTTGTCTTGGATCTTTGCCTTC 3402 Query 171993 ACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTT 172052 |||||| || ||||| || ||| || || ||||| || || || ||||| || || Sbjct 3401 ACATTATCAATCGTATCCGAGCTTTCCACCTCCAGAGTGATCGTCTTTCCAGTCAACGTC 3342 Query 172053 TTAATGAATATCTGCAT 172069 |||| |||||||||||| Sbjct 3341 TTAACGAATATCTGCAT 3325 >seq284040 Length=2693 Score = 86.0 bits (94), Expect = 1e-11 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || |||| || || || ||||| || || ||||| ||||| ||||| || || |||||| Sbjct 1141 TCTTCCAGCTGCTTTCCGGCAAATATCAACCTCTGCTGGTCCGGTGGAATCCCCTCTTTA 1082 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 || || || || || |||||| || ||||| || || || || |||||||| Sbjct 1081 TCCTGAATCTTGGCCTTGACATTATCGATCGTATCGGAGCTCTCCACCTCCAGAGTAATC 1022 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || || || || || | |||||||||||| Sbjct 1021 GTCTTCCCGGTCAACGTCTTCACGAATATCTGCAT 987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899887274734800