Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq256846 150 5e-31 seq34029 143 8e-29 seq275305 127 6e-24 seq161111 120 9e-22 seq180108 100 8e-16 seq162260 98.7 3e-15 seq243911 84.2 6e-11 >seq256846 Length=9359 Score = 150 bits (166), Expect = 5e-31 Identities = 294/427 (69%), Gaps = 22/427 (5%) Strand=Plus/Minus Query 288938 TAAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAAC 288997 |||| |||||||| ||| | || ||||| | |||||| ||||| ||||||||| | Sbjct 2764 TAAAACCATCCATTTCTGTGAGAAGCTGATTCAATGTTTGCTCCCTCTCATCATTT---C 2708 Query 288998 CTCTTGAATCACCCGAATC--GCTCCtttttt--tACCAACAGCATCAATTTCGTCAATG 289053 ||| |||| | || | |||| | | | ||||||||||| |||||||||||| Sbjct 2707 CTC------CACCA-ATTCCAGTTCCTCTCTGCCTTCCAACAGCATCTATTTCGTCAATG 2655 Query 289054 AAAATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCT 289113 || | || ||| || || || |||| | ||||| || |||||||| || || Sbjct 2654 AAGACCAAACATGGCGAGTTCATCTTCGCCTTGTTGAATAAATCCCTTACACGAGACGCC 2595 Query 289114 CCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACATTT 289173 || | ||| ||| ||||||| | || || || | || | || ||| | || | Sbjct 2594 CCTACACCCACAAACATTTCAATGAACTCTGATCCCGAGAGCGAAAAGAAAGGCACTCCT 2535 Query 289174 GCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAAT 289233 ||||| || |||| ||| ||||||| || ||||| || || || ||||| ||| | | Sbjct 2534 GCTTCTCCGGCTATGGCCTTCGCCAGGAGCGTCTTCCCGGTCCCTGGTGGACCCACCAGA 2475 Query 289234 AGAACTCCCTTTGGTACTTTTGCCCCA---GCAGACTTATATTTCTCAGGGCTCTTTAAA 289290 ||||| || || || | |||| ||| ||||| | | || || ||| |||| | | Sbjct 2474 AGAACACCTTTCGGAATCCTTGCACCAACTGCAGA---AAACTTTTCCGGGGTCTTGAGA 2418 Query 289291 AATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATC-ACATCCTGCTACATCAGCAAA 289349 || ||||||| |||| | || | |||||| ||||| ||| || ||||||||| |||| Sbjct 2417 AACTCTACAACCTCCTGGAAATCTTGTTTTGCTTCATCGACA-CCAGCTACATCATCAAA 2359 Query 289350 AGTAATA 289356 || ||| Sbjct 2358 TGTTATA 2352 >seq34029 Length=8270 Score = 143 bits (158), Expect = 8e-29 Identities = 226/317 (71%), Gaps = 10/317 (3%) Strand=Plus/Plus Query 302565 CATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTT 302624 ||| || ||||||||| ||| | || || |||||||||||||||||| |||||||| Sbjct 2245 CATGATATCTTCCATAGCCTTTACCAATCGCCGCTGAATATAACCAGTTTCGGATGTTTT 2304 Query 302625 TACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGG 302684 || || |||||||| | ||| | | ||| ||||||||||| || || | ||| | || Sbjct 2305 CACTGCCGTATCAATCAAACCTTCTCTACCTCCCATAGCATGAAAAAAGAACTCCTGTGG 2364 Query 302685 TCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG--CG-AATCGTC 302741 | | ||| | | | | ||| |||| || || ||||| || || || |||| || Sbjct 2365 TGTCAACCCTCGTAGATAAGAGTTCTCCACAAACCCACGACTTTCAGGTCCGTAATCATC 2424 Query 302742 GAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCAT--AGCCGTATGGGATACGCTTTCCA 302799 ||| || || || || || |||| | ||| || |||| |||||||| ||||| || Sbjct 2425 ---CTTCGTGAAATGAGGAAGAGTCC-GATCT-ATGAAGCCATATGGGATCCGCTTACCT 2479 Query 302800 TCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTG 302859 ||||||||||||||||||| || | | |||| || || ||||| | ||| || || Sbjct 2480 TCAACGTTCTGCTGTCCCACACAAGCAGTCATTTGTGATATATTAATGAAACTTCCTTTT 2539 Query 302860 GAGCCAGCATTTACCAT 302876 || || || | ||||| Sbjct 2540 GAACCTGCTGTAACCAT 2556 >seq275305 Length=4240 Score = 127 bits (140), Expect = 6e-24 Identities = 325/482 (67%), Gaps = 12/482 (2%) Strand=Plus/Minus Query 288874 AATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATTCGGTT 288933 || |||| ||| | ||||| || | ||| || ||||| | ||||| |||| | | || Sbjct 3673 AAAGCTGAGTCAAGAATATCTGCACGGTTGGTAGCTGCAACTACAATAATACCTGTG-TT 3615 Query 288934 TGCTT-AAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATT 288992 ||| ||| |||||||| || |||| || || || |||||||| ||||||||||| Sbjct 3614 CCCTTCAAAGCCATCCATCTCGGTCAAAAGCTGGTTCAGCGTTTGTTCTCTTTCATCATT 3555 Query 288993 TGAACCTCTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAAT 289052 ||||| ||| ||| | || | ||||| ||||||||||||||||| |||| Sbjct 3554 CCCACCTC--CAAT-ACC--AGTC-CCCCTTTGCCGCCCAACAGCATCAATTTCATCAAC 3501 Query 289053 GAAAATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGC 289112 || | | ||| |||| ||| | | || | || | ||||| || | || || Sbjct 3500 AAACACAATACAAGGAGCATTCTCCTTGGCCTTCTTGAAGAGATCTCTAACTCTTGAAGC 3441 Query 289113 TCCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACAT 289171 |||| ||||||| |||| || ||||| || ||| | || | | || | || | ||| Sbjct 3440 ACCAACACCAACAAACATCTCAACAAACTCCGAACCCGA-AATAGAGAAAAACGGAACAC 3382 Query 289172 TTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTA 289231 |||||| || || | ||| | || || ||||| || || ||||| || || ||| | | Sbjct 3381 CTGCTTCACCAGCAATGGCCTTTGCTAGCAGTGTTTTTCCAGTTCCCGGAGGACCCACAA 3322 Query 289232 ATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAA 289291 ||||| ||||| || | || ||| ||| | | |||| || |||||| || Sbjct 3321 GAAGAACACCCTTCGGAATCCGAGCACCAACAGCAGTGAACCTCTCTGGCTTCTTTAGAA 3262 Query 289292 ATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATC-ACATCCTGCTACATCAGCAAAA 289350 | || |||| ||| | || | ||||| ||||| ||| || || |||||| |||| Sbjct 3261 ACTCGACAACCTCCATGAAATCCTGCTTTGCTTCATCGACA-CCAGCAACATCATCAAAG 3203 Query 289351 GT 289352 || Sbjct 3202 GT 3201 >seq161111 Length=12134 Score = 120 bits (132), Expect = 9e-22 Identities = 168/235 (71%), Gaps = 3/235 (1%) Strand=Plus/Minus Query 156049 TACCATTCCTCTTGCCACCC---TGATCTACATACCGAGCAGTCTTATTGAAGACACCTA 156105 |||| || ||||||||||| || || ||||| ||||| || | ||||||||||| | Sbjct 5288 TACCCTTTCTCTTGCCACCTCCTTGGTCAACATAACGAGCTGTATCATTGAAGACACGCA 5229 Query 156106 GCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGC 156165 ||| |||||||| |||||||| |||||||| ||||| || || | |||| ||| | Sbjct 5228 ACATTGGAATAATGCCATTGGATGTGCCATTTGTTCCACGTATGTAACTTCCAGTTGAAC 5169 Query 156166 GAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCT 156225 | | |||||||| | | ||||| || |||| |||| || ||| ||||||| Sbjct 5168 GGATATTATGAACAGAGACACCAATTCCTCCTGCTGATTTGCTGATAACAGCACATTCCT 5109 Query 156226 TTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCA 156280 | | ||| | | || |||||||| |||||||| ||| ||| ||| |||| Sbjct 5108 TCAAAGTGTCATATATGCCTTCAATGCTATCATCTTTCATGCATATCAGAAAGCA 5054 >seq180108 Length=14591 Score = 100 bits (110), Expect = 8e-16 Identities = 155/220 (70%), Gaps = 6/220 (3%) Strand=Plus/Plus Query 156049 TACCATTCCTCTTGCCACCC---TGATCTACATACCGAGCAGTCTTATTGAAGACACCTA 156105 |||| || ||||||||||| || || ||||| || ||||| | ||||||||||| | Sbjct 8311 TACCCTTTCTCTTGCCACCTCCTTGGTCAACATAACGGGCAGTATCATTGAAGACACGCA 8370 Query 156106 GCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGC 156165 ||| |||||||| |||||||| || ||||| ||||| || || | |||| || | Sbjct 8371 ACATTGGAATAATGCCATTGGATGTACCATTTGTTCCACGTATGTAACTTCCAGTTGCAC 8430 Query 156166 GAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCT 156225 ||| |||||||| | | ||||| || |||| ||| || ||| ||||||| Sbjct 8431 GAATATTATGAACAGAGACACCAATTCCTCCTG---CTTTGCTGATAACAGCACATTCCT 8487 Query 156226 TTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT 156265 | | ||| | | || |||||||| |||| ||| ||| Sbjct 8488 TGAAAGTGTCATATATGCCTTCAATGCTATCACCTTTCAT 8527 >seq162260 Length=11445 Score = 98.7 bits (108), Expect = 3e-15 Identities = 273/415 (66%), Gaps = 8/415 (2%) Strand=Plus/Plus Query 288939 AAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACC 288998 ||| || ||||| || || | |||||||| ||||||||||||||||||||| ||| Sbjct 7906 AAACCCGTCCATCTCGGTCAATAGTTGATTAATCGTTTGTTCCCTTTCATCATTTCCACC 7965 Query 288999 TCTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAAT 289058 | | ||| | | | |||| | || |||||||| || || || || || | Sbjct 7966 AC---CAAGACC---AGCACCTCTTTGCCTTCCTACAGCATCTATCTCATCTATAAACAC 8019 Query 289059 CACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAG 289118 | || || | || | |||| | |||| || |||| || || || || |||| Sbjct 8020 AATGCATGGCGCCTTCGATTTCGCCTTCTCAAACAAATCTCGAACTCGAGAAGCCCCAAC 8079 Query 289119 ACCAACATACATTTCTACAAATTCAGAAGCGG-ATACTTGAATGAATGTTACATTTGCTT 289177 || ||| ||| || || || || || |||| | || ||| || | || || | Sbjct 8080 GCCCACAAACAACTCAACGAACTCGGACGCGGCACACGAGAA-AAACGGCACGCCGGCCT 8138 Query 289178 CGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAA 289237 | || || || || | |||| ||| ||||| || || || ||||||||| | || ||| Sbjct 8139 CTCCGGCCACCGCTCGAGCCAAAAGGGTCTTTCCGGTCCCCGGTGGTCCCACCAAGAGAC 8198 Query 289238 CTCCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTA 289297 || ||||| | ||| ||||| || | |||| || || ||| | || || || || | Sbjct 8199 ACCCTTTTGGGATTTTAGCCCCGAGAGCCGTATACTTATCCGGGTTTTTCAAGAAATCAA 8258 Query 289298 CAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 | | ||||| ||| || || |||| ||| ||| || || || ||||| || Sbjct 8259 CCACTTCCTGAAGCTCCAGCTTAGCCTGATCGGCTCCCGCCACGTCCGCAAACGT 8313 >seq243911 Length=7974 Score = 84.2 bits (92), Expect = 6e-11 Identities = 72/88 (82%), Gaps = 1/88 (1%) Strand=Plus/Plus Query 408940 AAAAGTTCTATTAACTCAGTTGGTTAGAGTGTCGGTCTTATGAGCCGAAAGTCGTGGGTT 408999 ||||| || || ||||||||||||||| || |||||||||||||||| |||| ||||| Sbjct 597 AAAAGGTCCCGTAGCTCAGTTGGTTAGAGCGTTGGTCTTATGAGCCGAAGGTCGCGGGTT 656 Query 409000 CGAGTCCCACATAGAACAt-ttttttAA 409026 |||| ||| | || ||| |||||||| Sbjct 657 CGAGCCCCGCCGGGACCATATTTTTTAA 684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1463069416988322