Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_021559.1 Length=179063 Score E Sequences producing significant alignments: (Bits) Value seq107965 273 2e-68 seq300680 185 1e-41 seq169634 185 1e-41 seq250312 150 2e-31 seq10884 120 3e-22 seq8631 116 4e-21 >seq107965 Length=6474 Score = 273 bits (302), Expect = 2e-68 Identities = 393/554 (71%), Gaps = 0/554 (0%) Strand=Plus/Plus Query 72448 GCAATAGGATTACACTTCTATCCCATCTGGGAAGCAGCCACTATGGACGAGTGGTTGTAT 72507 || ||||| || || || || || || ||||||||| | || | || || ||||| || Sbjct 5921 GCTATAGGTTTGCATTTTTACCCAATATGGGAAGCAACATCTGTTGATGAATGGTTATAC 5980 Query 72508 AACGGAGGTCCTTACCAGTTAGTTATTTTCCACTTCCTTATTGGAATCTCTGCCTACATG 72567 || || |||||||| | || || || | |||||| | |||| | || |||||| Sbjct 5981 AATGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATG 6040 Query 72568 GGTAGACAGTGGGAACTATCATACAGACTAGGAATGAGACCTTGGATATGTGTAGCATAC 72627 ||| | |||||||||| | | || || ||| || ||||||| ||| ||||| Sbjct 6041 GGTCGTGAGTGGGAACTTAGTTTTCGTCTGGGTATGCGAACTTGGATGGTTGTTGCATAT 6100 Query 72628 TCAGCACCTGTATCTGCAGCATTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCA 72687 ||||| ||||| | || || || || ||| | | || ||| | ||||| || Sbjct 6101 TCAGCTCCTGTTGCAGCTGCGAGTGTTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGC 6160 Query 72688 TTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCATGTTCGTGTTCCAA 72747 || |||||||||||||| ||||| || || ||||| |||||||||||| | || ||||| Sbjct 6161 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 6220 Query 72748 GCAGAACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAGCAGGTATGTTCGGT 72807 || || |||||||| || |||||||| || || ||| ||||||||| ||| | |||| Sbjct 6221 GCTGAGCACAACATTCTTATGCACCCATTTCACATGCTAGGTGTAGCTGGTGTAATCGGC 6280 Query 72808 GGTAGTCTCTTCAGTGCAATGCACGGTTCACTTGTTACTTCATCTCTAATCAGAGAGACA 72867 || || |||||||| ||||| ||||| | || || || | | | ||||| || || Sbjct 6281 GGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTTGTTTGATCAGGGAAACC 6340 Query 72868 ACAGAGAACGAGAGTCAAAACTACGGCTATAAGTTCGGACAAGAAGAAGAAACATATAAC 72927 ||||| || | | || | || || | || || | |||||| ||||| ||||| Sbjct 6341 ACAGAAAATAAATCTGCTAATGAAGGTTACAGATTTGGTCTAGAAGATGAAACTTATAAT 6400 Query 72928 ATTGTTGCTGCTCATGGATACTTCGGTAGATTAATCTTCCAGTATGCATCATTCAACAAC 72987 || || || | |||||| || || || |||| |||||||| ||||| ||||||||| Sbjct 6401 ATCGTAGCCGTTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAAC 6460 Query 72988 TCTCGTTCATTACA 73001 |||||||| ||||| Sbjct 6461 TCTCGTTCTTTACA 6474 >seq300680 Length=3790 Score = 185 bits (204), Expect = 1e-41 Identities = 234/319 (73%), Gaps = 2/319 (1%) Strand=Plus/Minus Query 72688 TTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCATGTTCGTGTTCCAA 72747 || |||||||||||||| ||||| || || ||||| |||||||||||| | || ||||| Sbjct 670 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 611 Query 72748 GCAGAACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAGCAGGTATGTTCGGT 72807 | || |||||||| || |||||||| || || ||| | | ||||| ||| | ||| Sbjct 610 GTTGAGCACAACATTCTTATGCACCCATTTCACATGCTAAGCGTAGCTGGTGTACTCGTC 551 Query 72808 GGTAGTCTCTTCAGTGCAATGCACGGTTCACTTGTTACTTCATCTCTAATCAGAGAGACA 72867 | || || | ||| ||||| ||||| | || || || | ||||||| || || Sbjct 550 AGCTCCCTATTTAATGCTATGCATGGTTCCTTGGTAACCTCTAGTTTAATCAG-GAAACC 492 Query 72868 ACAGAGAACGAGAGTCAAAACTACGGCTATAAGTTCGGACAAGAAGAAG-AAACATATAA 72926 | ||| || || | || | || || || ||||| |||||||||| |||| ||||| Sbjct 491 AGAGAAAATGAATTTGCTAATGAAGGTTACAAATTCGGTCAAGAAGAAGAAAACTTATAA 432 Query 72927 CATTGTTGCTGCTCATGGATACTTCGGTAGATTAATCTTCCAGTATGCATCATTCAACAA 72986 || || || |||||||| || || || |||| ||||||||||||| |||||||| Sbjct 431 TATCGTAGCCGCTCATGGTTATTTTGGCCGATTGGTCTTCCAGTATGCTAGTTTCAACAA 372 Query 72987 CTCTCGTTCATTACACTTC 73005 ||||||||| ||||| ||| Sbjct 371 CTCTCGTTCTTTACATTTC 353 >seq169634 Length=720 Score = 185 bits (204), Expect = 1e-41 Identities = 307/441 (70%), Gaps = 2/441 (0%) Strand=Plus/Minus Query 72271 TACGTTGGTTGGTTTGGTGTCTTAATGATCCCATGTCTTCTA-ACTGCTGCTGCTTGTTT 72329 ||| |||| ||||||||||| || |||||||| | ||| | || || || || || Sbjct 441 TACATTGGATGGTTTGGTGTTTTGATGATCCC-TACCTTATTGACCGCAACTTCTGTATT 383 Query 72330 CATTGTAGCATTCATCGCTGCTCCTCCAGTCGATATCGACGGAATCAGAGAACCAGTTGC 72389 ||| | || ||||| |||||||||||||| ||||| || || || | ||||| ||| Sbjct 382 TATTATCGCTTTCATTGCTGCTCCTCCAGTGGATATTGATGGTATTCGTGAACCTGTTTA 323 Query 72390 GGGTTCTTTCTTATATGGTAACAACATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGC 72449 || ||| | ||||| ||||| || || || |||| | |||| |||| || Sbjct 322 TGGATCTCTAAGTTATGGAAACAATATTATTTCAGGTGTCATTATTCCTACTTCTGCAGC 263 Query 72450 AATAGGATTACACTTCTATCCCATCTGGGAAGCAGCCACTATGGACGAGTGGTTGTATAA 72509 ||||| || || || || || || ||||||||||| | | || || ||||| || || Sbjct 262 TATAGGTTTGCATTTTTACCCAATATGGGAAGCAGCATCCGTTGATGAATGGTTATACAA 203 Query 72510 CGGAGGTCCTTACCAGTTAGTTATTTTCCACTTCCTTATTGGAATCTCTGCCTACATGGG 72569 || |||||||| | || || || | |||||| | |||| | || |||||||| Sbjct 202 TGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGG 143 Query 72570 TAGACAGTGGGAACTATCATACAGACTAGGAATGAGACCTTGGATATGTGTAGCATACTC 72629 | | |||||||||| | | | || || ||| |||||||||| ||| ||||| || Sbjct 142 TCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGACCTTGGATTGTTGTTGCATATTC 83 Query 72630 AGCACCTGTATCTGCAGCATTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCATT 72689 ||| |||| | || ||| ||| || ||| | | || ||| | ||||| || || Sbjct 82 AGCTTCTGTTGCAGCTGCAACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTT 23 Query 72690 CTCTGATGGTATGCCACTAGG 72710 |||||||||||||| ||||| Sbjct 22 TTCTGATGGTATGCCTCTAGG 2 >seq250312 Length=8481 Score = 150 bits (166), Expect = 2e-31 Identities = 314/464 (68%), Gaps = 13/464 (3%) Strand=Plus/Plus Query 72751 GAACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGT 72810 || |||||||| || | |||| | || || ||| ||| ||||| ||| | | || | Sbjct 1574 GAGCACAACATTCTTAGGCACTCATTTCACATGCTAGGCGTAGCTGGTGTAATTGGCAGC 1633 Query 72811 AGTCTCTTCAGTGCAATGCACGGTTCACTTGTTACTTCATCTCTAATCAGAGAGACAACA 72870 || |||||||| |||| ||||| | || || | | | ||||| || || ||| Sbjct 1634 TCCCTATTCAGTGCTATGCGTGGTTCCTTGGTAACCCCTAGTTTGATCAGGGAAACCACA 1693 Query 72871 GAGAACGAGAGTCAAAACTACGGCTATAAGTTCGGACAAGAAGAAGAAACATATAACATT 72930 |||| || || | || |||| ||||| ||||||| ||||| || || ||| Sbjct 1694 AAGAATGAATAAGCTAATGAAGGTTATATATTCGGTCAAGAAGGAGAAAATTAGAATATT 1753 Query 72931 GTTGCTGCTCATGGATACTTCGGTAGATTAATCTTCCAGTATGCATCATTCAACAACTCT 72990 || || |||||||| || || ||| |||| ||||||| |||| ||||||||||| Sbjct 1754 GTAGCCGCTCATGGTTATTTTGGTCGATTGATCTTCCGACATGCTAGTTTCAACAACTCA 1813 Query 72991 CGTTCATTACACTTCTTCCTCGCTGTATTCCCTGTAGTCT-GTGTATGGTTAACCTCAAT 73049 |||| ||||| |||||||| ||| | ||| ||| || ||| || | Sbjct 1814 CGTTTTTTACATTTCTTCCTAGCTACTTGGCCT---ATCTGGTTTATTGT-------GTT 1863 Query 73050 GGGTATCTGTACAATGGCATTCAACCTTAACGGATTCAACTTCAACCAATCAGTTGTAGA 73109 |||||| | || ||||| | |||||| || || || | ||| | ||||| || || || Sbjct 1864 AGGTATCAGCACTATGGCTTACAACCTAAATGGTTTTAGTTTCCATCAATCTGTAGTCGA 1923 Query 73110 -TGCAAACGGAAAGATTGTACCAACATGGGGAGATGTTCTTAACAGAGCAAACCTTGGAA 73168 | || | | | | | || |||| ||| | ||||| | || |||||||| | Sbjct 1924 CAGTCAATGTCATG-TAATTAATACTTGGGCTGATATCATTAACTGTGCTAACCTTGGTA 1982 Query 73169 TGGAAGTTATGCATGAAAGAAATGCACACAACTTCCCACTAGAC 73212 ||||||||||| ||||| | ||||| || || ||||| |||||| Sbjct 1983 TGGAAGTTATGTATGAATGTAATGCTCATAATTTCCCTCTAGAC 2026 >seq10884 Length=5042 Score = 120 bits (132), Expect = 3e-22 Identities = 116/149 (78%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 72688 TTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCATGTTCGTGTTCCAA 72747 || |||||||||||||| ||||| || || ||||| |||||||||||| | || ||||| Sbjct 3789 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 3848 Query 72748 GCAGAACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAGCAGGTATGTTCGGT 72807 || || |||||||| || |||||||| || || ||| ||| ||||| ||| | ||||| Sbjct 3849 GCTGAGCACAACATTCTTATGCACCCATTTCACATGCTAGGCGTAGCTGGTGTATTCGGC 3908 Query 72808 GGTAGTCTCTTCAGTGCAATGCACGGTTC 72836 || || |||| ||| || || ||||| Sbjct 3909 GGCTCCCTATTCATTGCTATACATGGTTC 3937 >seq8631 Length=609 Score = 116 bits (128), Expect = 4e-21 Identities = 119/153 (78%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 72693 TGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGA 72752 |||||||||||| ||||| || || ||||| |||||||||||| | || ||||| || || Sbjct 330 TGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCCGA 271 Query 72753 ACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAG 72812 |||||||| || |||||||| || || ||| || ||||| ||| | ||||| || Sbjct 270 GCACAACATTCTTATGCACCCATTTCACATGCTAGACGTAGCTGGTGTATTCGGCGGCTC 211 Query 72813 TCT-CTTCAGTGCAATGCACGGTTCACTTGTTA 72844 || |||||||| ||||| ||||| |||| || Sbjct 210 CCTAATTCAGTGCTATGCATGGTTC-CTTGGTA 179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569551606246480