Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27]
463,906 sequences; 661,937,708 total letters
Query= NC_021559.1
Length=179063
Score E
Sequences producing significant alignments: (Bits) Value
seq107965 273 2e-68
seq300680 185 1e-41
seq169634 185 1e-41
seq250312 150 2e-31
seq10884 120 3e-22
seq8631 116 4e-21
>seq107965
Length=6474
Score = 273 bits (302), Expect = 2e-68
Identities = 393/554 (71%), Gaps = 0/554 (0%)
Strand=Plus/Plus
Query 72448 GCAATAGGATTACACTTCTATCCCATCTGGGAAGCAGCCACTATGGACGAGTGGTTGTAT 72507
|| ||||| || || || || || || ||||||||| | || | || || ||||| ||
Sbjct 5921 GCTATAGGTTTGCATTTTTACCCAATATGGGAAGCAACATCTGTTGATGAATGGTTATAC 5980
Query 72508 AACGGAGGTCCTTACCAGTTAGTTATTTTCCACTTCCTTATTGGAATCTCTGCCTACATG 72567
|| || |||||||| | || || || | |||||| | |||| | || ||||||
Sbjct 5981 AATGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATG 6040
Query 72568 GGTAGACAGTGGGAACTATCATACAGACTAGGAATGAGACCTTGGATATGTGTAGCATAC 72627
||| | |||||||||| | | || || ||| || ||||||| ||| |||||
Sbjct 6041 GGTCGTGAGTGGGAACTTAGTTTTCGTCTGGGTATGCGAACTTGGATGGTTGTTGCATAT 6100
Query 72628 TCAGCACCTGTATCTGCAGCATTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCA 72687
||||| ||||| | || || || || ||| | | || ||| | ||||| ||
Sbjct 6101 TCAGCTCCTGTTGCAGCTGCGAGTGTTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGC 6160
Query 72688 TTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCATGTTCGTGTTCCAA 72747
|| |||||||||||||| ||||| || || ||||| |||||||||||| | || |||||
Sbjct 6161 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 6220
Query 72748 GCAGAACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAGCAGGTATGTTCGGT 72807
|| || |||||||| || |||||||| || || ||| ||||||||| ||| | ||||
Sbjct 6221 GCTGAGCACAACATTCTTATGCACCCATTTCACATGCTAGGTGTAGCTGGTGTAATCGGC 6280
Query 72808 GGTAGTCTCTTCAGTGCAATGCACGGTTCACTTGTTACTTCATCTCTAATCAGAGAGACA 72867
|| || |||||||| ||||| ||||| | || || || | | | ||||| || ||
Sbjct 6281 GGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTTGTTTGATCAGGGAAACC 6340
Query 72868 ACAGAGAACGAGAGTCAAAACTACGGCTATAAGTTCGGACAAGAAGAAGAAACATATAAC 72927
||||| || | | || | || || | || || | |||||| ||||| |||||
Sbjct 6341 ACAGAAAATAAATCTGCTAATGAAGGTTACAGATTTGGTCTAGAAGATGAAACTTATAAT 6400
Query 72928 ATTGTTGCTGCTCATGGATACTTCGGTAGATTAATCTTCCAGTATGCATCATTCAACAAC 72987
|| || || | |||||| || || || |||| |||||||| ||||| |||||||||
Sbjct 6401 ATCGTAGCCGTTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAAC 6460
Query 72988 TCTCGTTCATTACA 73001
|||||||| |||||
Sbjct 6461 TCTCGTTCTTTACA 6474
>seq300680
Length=3790
Score = 185 bits (204), Expect = 1e-41
Identities = 234/319 (73%), Gaps = 2/319 (1%)
Strand=Plus/Minus
Query 72688 TTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCATGTTCGTGTTCCAA 72747
|| |||||||||||||| ||||| || || ||||| |||||||||||| | || |||||
Sbjct 670 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 611
Query 72748 GCAGAACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAGCAGGTATGTTCGGT 72807
| || |||||||| || |||||||| || || ||| | | ||||| ||| | |||
Sbjct 610 GTTGAGCACAACATTCTTATGCACCCATTTCACATGCTAAGCGTAGCTGGTGTACTCGTC 551
Query 72808 GGTAGTCTCTTCAGTGCAATGCACGGTTCACTTGTTACTTCATCTCTAATCAGAGAGACA 72867
| || || | ||| ||||| ||||| | || || || | ||||||| || ||
Sbjct 550 AGCTCCCTATTTAATGCTATGCATGGTTCCTTGGTAACCTCTAGTTTAATCAG-GAAACC 492
Query 72868 ACAGAGAACGAGAGTCAAAACTACGGCTATAAGTTCGGACAAGAAGAAG-AAACATATAA 72926
| ||| || || | || | || || || ||||| |||||||||| |||| |||||
Sbjct 491 AGAGAAAATGAATTTGCTAATGAAGGTTACAAATTCGGTCAAGAAGAAGAAAACTTATAA 432
Query 72927 CATTGTTGCTGCTCATGGATACTTCGGTAGATTAATCTTCCAGTATGCATCATTCAACAA 72986
|| || || |||||||| || || || |||| ||||||||||||| ||||||||
Sbjct 431 TATCGTAGCCGCTCATGGTTATTTTGGCCGATTGGTCTTCCAGTATGCTAGTTTCAACAA 372
Query 72987 CTCTCGTTCATTACACTTC 73005
||||||||| ||||| |||
Sbjct 371 CTCTCGTTCTTTACATTTC 353
>seq169634
Length=720
Score = 185 bits (204), Expect = 1e-41
Identities = 307/441 (70%), Gaps = 2/441 (0%)
Strand=Plus/Minus
Query 72271 TACGTTGGTTGGTTTGGTGTCTTAATGATCCCATGTCTTCTA-ACTGCTGCTGCTTGTTT 72329
||| |||| ||||||||||| || |||||||| | ||| | || || || || ||
Sbjct 441 TACATTGGATGGTTTGGTGTTTTGATGATCCC-TACCTTATTGACCGCAACTTCTGTATT 383
Query 72330 CATTGTAGCATTCATCGCTGCTCCTCCAGTCGATATCGACGGAATCAGAGAACCAGTTGC 72389
||| | || ||||| |||||||||||||| ||||| || || || | ||||| |||
Sbjct 382 TATTATCGCTTTCATTGCTGCTCCTCCAGTGGATATTGATGGTATTCGTGAACCTGTTTA 323
Query 72390 GGGTTCTTTCTTATATGGTAACAACATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGC 72449
|| ||| | ||||| ||||| || || || |||| | |||| |||| ||
Sbjct 322 TGGATCTCTAAGTTATGGAAACAATATTATTTCAGGTGTCATTATTCCTACTTCTGCAGC 263
Query 72450 AATAGGATTACACTTCTATCCCATCTGGGAAGCAGCCACTATGGACGAGTGGTTGTATAA 72509
||||| || || || || || || ||||||||||| | | || || ||||| || ||
Sbjct 262 TATAGGTTTGCATTTTTACCCAATATGGGAAGCAGCATCCGTTGATGAATGGTTATACAA 203
Query 72510 CGGAGGTCCTTACCAGTTAGTTATTTTCCACTTCCTTATTGGAATCTCTGCCTACATGGG 72569
|| |||||||| | || || || | |||||| | |||| | || ||||||||
Sbjct 202 TGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGG 143
Query 72570 TAGACAGTGGGAACTATCATACAGACTAGGAATGAGACCTTGGATATGTGTAGCATACTC 72629
| | |||||||||| | | | || || ||| |||||||||| ||| ||||| ||
Sbjct 142 TCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGACCTTGGATTGTTGTTGCATATTC 83
Query 72630 AGCACCTGTATCTGCAGCATTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCATT 72689
||| |||| | || ||| ||| || ||| | | || ||| | ||||| || ||
Sbjct 82 AGCTTCTGTTGCAGCTGCAACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTT 23
Query 72690 CTCTGATGGTATGCCACTAGG 72710
|||||||||||||| |||||
Sbjct 22 TTCTGATGGTATGCCTCTAGG 2
>seq250312
Length=8481
Score = 150 bits (166), Expect = 2e-31
Identities = 314/464 (68%), Gaps = 13/464 (3%)
Strand=Plus/Plus
Query 72751 GAACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGT 72810
|| |||||||| || | |||| | || || ||| ||| ||||| ||| | | || |
Sbjct 1574 GAGCACAACATTCTTAGGCACTCATTTCACATGCTAGGCGTAGCTGGTGTAATTGGCAGC 1633
Query 72811 AGTCTCTTCAGTGCAATGCACGGTTCACTTGTTACTTCATCTCTAATCAGAGAGACAACA 72870
|| |||||||| |||| ||||| | || || | | | ||||| || || |||
Sbjct 1634 TCCCTATTCAGTGCTATGCGTGGTTCCTTGGTAACCCCTAGTTTGATCAGGGAAACCACA 1693
Query 72871 GAGAACGAGAGTCAAAACTACGGCTATAAGTTCGGACAAGAAGAAGAAACATATAACATT 72930
|||| || || | || |||| ||||| ||||||| ||||| || || |||
Sbjct 1694 AAGAATGAATAAGCTAATGAAGGTTATATATTCGGTCAAGAAGGAGAAAATTAGAATATT 1753
Query 72931 GTTGCTGCTCATGGATACTTCGGTAGATTAATCTTCCAGTATGCATCATTCAACAACTCT 72990
|| || |||||||| || || ||| |||| ||||||| |||| |||||||||||
Sbjct 1754 GTAGCCGCTCATGGTTATTTTGGTCGATTGATCTTCCGACATGCTAGTTTCAACAACTCA 1813
Query 72991 CGTTCATTACACTTCTTCCTCGCTGTATTCCCTGTAGTCT-GTGTATGGTTAACCTCAAT 73049
|||| ||||| |||||||| ||| | ||| ||| || ||| || |
Sbjct 1814 CGTTTTTTACATTTCTTCCTAGCTACTTGGCCT---ATCTGGTTTATTGT-------GTT 1863
Query 73050 GGGTATCTGTACAATGGCATTCAACCTTAACGGATTCAACTTCAACCAATCAGTTGTAGA 73109
|||||| | || ||||| | |||||| || || || | ||| | ||||| || || ||
Sbjct 1864 AGGTATCAGCACTATGGCTTACAACCTAAATGGTTTTAGTTTCCATCAATCTGTAGTCGA 1923
Query 73110 -TGCAAACGGAAAGATTGTACCAACATGGGGAGATGTTCTTAACAGAGCAAACCTTGGAA 73168
| || | | | | | || |||| ||| | ||||| | || |||||||| |
Sbjct 1924 CAGTCAATGTCATG-TAATTAATACTTGGGCTGATATCATTAACTGTGCTAACCTTGGTA 1982
Query 73169 TGGAAGTTATGCATGAAAGAAATGCACACAACTTCCCACTAGAC 73212
||||||||||| ||||| | ||||| || || ||||| ||||||
Sbjct 1983 TGGAAGTTATGTATGAATGTAATGCTCATAATTTCCCTCTAGAC 2026
>seq10884
Length=5042
Score = 120 bits (132), Expect = 3e-22
Identities = 116/149 (78%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 72688 TTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCATGTTCGTGTTCCAA 72747
|| |||||||||||||| ||||| || || ||||| |||||||||||| | || |||||
Sbjct 3789 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 3848
Query 72748 GCAGAACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAGCAGGTATGTTCGGT 72807
|| || |||||||| || |||||||| || || ||| ||| ||||| ||| | |||||
Sbjct 3849 GCTGAGCACAACATTCTTATGCACCCATTTCACATGCTAGGCGTAGCTGGTGTATTCGGC 3908
Query 72808 GGTAGTCTCTTCAGTGCAATGCACGGTTC 72836
|| || |||| ||| || || |||||
Sbjct 3909 GGCTCCCTATTCATTGCTATACATGGTTC 3937
>seq8631
Length=609
Score = 116 bits (128), Expect = 4e-21
Identities = 119/153 (78%), Gaps = 2/153 (1%)
Strand=Plus/Minus
Query 72693 TGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGA 72752
|||||||||||| ||||| || || ||||| |||||||||||| | || ||||| || ||
Sbjct 330 TGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCCGA 271
Query 72753 ACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAG 72812
|||||||| || |||||||| || || ||| || ||||| ||| | ||||| ||
Sbjct 270 GCACAACATTCTTATGCACCCATTTCACATGCTAGACGTAGCTGGTGTATTCGGCGGCTC 211
Query 72813 TCT-CTTCAGTGCAATGCACGGTTCACTTGTTA 72844
|| |||||||| ||||| ||||| |||| ||
Sbjct 210 CCTAATTCAGTGCTATGCATGGTTC-CTTGGTA 179
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 569551606246480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |